Wall clock time and date at job start Tue Mar 31 2020 09:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.05448 * 2 1 4 4 C 1.54263 * 110.03291 * 121.41690 * 2 1 3 5 5 C 1.54890 * 104.19375 * 142.89524 * 4 2 1 6 6 C 1.54890 * 102.75018 * 322.06016 * 5 4 2 7 7 C 1.53872 * 110.03155 * 238.58479 * 2 1 3 8 8 H 1.09011 * 110.03132 * 121.37921 * 7 2 1 9 9 C 1.53000 * 110.03438 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47359 * 175.00037 * 9 7 2 11 11 O 1.21281 * 119.99960 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00035 * 179.97438 * 10 9 7 13 13 C 1.46760 * 125.33374 * 0.03864 * 12 10 9 14 14 C 1.55818 * 106.83139 * 198.45940 * 13 12 10 15 15 H 1.08993 * 113.08679 * 93.77373 * 14 13 12 16 16 C 1.53677 * 109.78590 * 221.40587 * 14 13 12 17 17 N 1.46767 * 107.98571 * 92.30173 * 16 14 13 18 18 C 1.36931 * 125.39760 * 179.29692 * 17 16 14 19 19 H 1.08003 * 120.00779 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99722 * 359.97438 * 18 17 16 21 21 N 1.31618 * 119.99702 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00212 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47527 * 89.99880 * 22 20 18 24 24 H 1.48506 * 109.47079 * 210.00428 * 22 20 18 25 25 H 1.48504 * 109.47091 * 329.99829 * 22 20 18 26 26 C 1.46764 * 109.27200 * 359.28135 * 17 16 14 27 27 C 1.53978 * 106.71735 * 18.46428 * 26 17 16 28 28 H 1.09001 * 112.80196 * 94.11921 * 27 26 17 29 29 C 1.46656 * 125.33833 * 179.97438 * 12 10 9 30 30 H 1.09003 * 109.46765 * 181.41647 * 1 2 3 31 31 H 1.09009 * 109.46679 * 301.41233 * 1 2 3 32 32 H 1.08997 * 109.47322 * 61.41607 * 1 2 3 33 33 H 1.09000 * 110.48807 * 261.56992 * 4 2 1 34 34 H 1.08990 * 110.48884 * 24.21961 * 4 2 1 35 35 H 1.09008 * 110.75476 * 80.37399 * 5 4 2 36 36 H 1.08995 * 110.76098 * 203.55470 * 5 4 2 37 37 H 1.09001 * 110.48135 * 279.26660 * 6 5 4 38 38 H 1.09004 * 110.48902 * 156.62403 * 6 5 4 39 39 H 1.09003 * 109.47106 * 54.99475 * 9 7 2 40 40 H 1.09007 * 109.46806 * 295.00277 * 9 7 2 41 41 H 1.08993 * 110.01903 * 317.72069 * 13 12 10 42 42 H 1.09002 * 110.01638 * 79.06266 * 13 12 10 43 43 H 1.09000 * 109.76842 * 211.92480 * 16 14 13 44 44 H 1.08998 * 109.76775 * 332.65415 * 16 14 13 45 45 H 0.97010 * 119.99606 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.01665 * 259.13651 * 26 17 16 47 47 H 1.08997 * 110.01461 * 137.79095 * 26 17 16 48 48 H 1.09005 * 109.76765 * 59.69717 * 29 12 10 49 49 H 1.09003 * 109.76767 * 298.95943 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2368 5 6 3.3137 -1.5007 0.7190 6 6 2.8875 -1.9405 -0.7036 7 6 2.0571 -0.7535 -1.2337 8 1 2.6860 -0.0950 -1.8330 9 6 0.8861 -1.2663 -2.0745 10 6 1.4127 -1.8937 -3.3394 11 8 2.6070 -1.9271 -3.5481 12 7 0.5566 -2.4179 -4.2387 13 6 -0.9049 -2.4404 -4.1062 14 6 -1.4308 -3.5241 -5.0946 15 1 -1.5612 -4.5006 -4.6283 16 6 -2.6965 -3.0135 -5.8011 17 7 -2.2869 -2.3667 -7.0532 18 6 -3.1343 -1.7989 -7.9668 19 1 -2.7370 -1.3445 -8.8624 20 6 -4.5040 -1.8074 -7.7417 21 7 -4.9881 -2.3607 -6.6500 22 14 -5.6602 -1.0335 -8.9882 23 1 -6.0686 -2.0551 -9.9856 24 1 -6.8638 -0.5135 -8.2909 25 1 -4.9673 0.0835 -9.6792 26 6 -0.8252 -2.4238 -7.1723 27 6 -0.3446 -3.5222 -6.2063 28 1 -0.2306 -4.4915 -6.6918 29 6 0.9392 -3.0539 -5.5036 30 1 -0.3633 -1.0274 0.0254 31 1 -0.3633 0.5357 0.8771 32 1 -0.3634 0.4917 -0.9024 33 1 2.3298 -0.0536 2.0254 34 1 1.3144 -1.4660 1.5966 35 1 4.1710 -0.8289 0.6751 36 1 3.5346 -2.3659 1.3440 37 1 2.2772 -2.8424 -0.6572 38 1 3.7638 -2.1036 -1.3311 39 1 0.2290 -0.4344 -2.3278 40 1 0.3281 -2.0097 -1.5051 41 1 -1.1830 -2.7027 -3.0856 42 1 -1.3181 -1.4659 -4.3665 43 1 -3.3602 -3.8503 -6.0186 44 1 -3.2088 -2.2926 -5.1640 45 1 -5.9453 -2.3663 -6.4926 46 1 -0.3903 -1.4643 -6.8924 47 1 -0.5438 -2.6766 -8.1945 48 1 1.5842 -3.9100 -5.3054 49 1 1.4634 -2.3353 -6.1337 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048835721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:12 Heat of formation + Delta-G solvation = -25.896786 kcal Electronic energy + Delta-G solvation = -26287.335614 eV Core-core repulsion = 22827.926249 eV Total energy + Delta-G solvation = -3459.409365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.36359 -39.12577 -37.71030 -34.95921 -32.47332 -31.88487 -30.99205 -29.98617 -29.68173 -26.45641 -25.52954 -25.22699 -24.80506 -22.74686 -20.91561 -20.22729 -19.55301 -19.30839 -18.32765 -17.29093 -16.77958 -16.07584 -15.84486 -15.04322 -14.84396 -14.73474 -14.38492 -13.92545 -13.69030 -13.66955 -13.22126 -13.02147 -12.82929 -12.46018 -12.32019 -12.12186 -11.92606 -11.83217 -11.73260 -11.41217 -11.06704 -10.91529 -10.90748 -10.84000 -10.82290 -10.72044 -10.62416 -10.38218 -10.33885 -10.15966 -10.00595 -9.93265 -9.70494 -9.51647 -8.64501 -8.36153 -6.87511 -5.76758 -3.09803 2.83520 3.23315 3.37479 3.43088 3.44472 4.39822 4.45375 4.46047 4.55723 4.71201 4.85359 5.08090 5.10569 5.16445 5.20227 5.26437 5.32406 5.40451 5.46141 5.47676 5.49520 5.51663 5.61963 5.67083 5.67957 5.73722 5.81555 5.84082 5.86508 5.89412 5.93150 6.01881 6.10678 6.12027 6.23332 6.24421 6.28276 6.33882 6.39622 6.50770 6.60173 6.65864 6.83374 7.48521 7.51596 7.74622 7.78440 8.21648 8.37365 9.18172 9.78371 10.42414 11.35040 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.003176 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.846627 B = 8813.111785 C = 9551.192533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.127 4.127 6 C -0.112 4.112 7 C -0.071 4.071 8 H 0.078 0.922 9 C -0.132 4.132 10 C 0.524 3.476 11 O -0.549 6.549 12 N -0.612 5.612 13 C 0.108 3.892 14 C -0.119 4.119 15 H 0.088 0.912 16 C 0.188 3.812 17 N -0.603 5.603 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.143 3.857 27 C -0.111 4.111 28 H 0.095 0.905 29 C 0.120 3.880 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.252 0.748 46 H 0.018 0.982 47 H 0.035 0.965 48 H 0.060 0.940 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.726 0.400 14.132 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.165 4.165 6 C -0.149 4.149 7 C -0.090 4.090 8 H 0.097 0.903 9 C -0.171 4.171 10 C 0.313 3.687 11 O -0.428 6.428 12 N -0.345 5.345 13 C -0.015 4.015 14 C -0.139 4.139 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.329 5.329 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.017 3.983 27 C -0.131 4.131 28 H 0.113 0.887 29 C -0.003 4.003 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.054 0.946 48 H 0.079 0.921 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.170 0.472 14.045 18.590 hybrid contribution -0.834 0.372 -0.719 1.162 sum 11.337 0.844 13.326 17.516 Atomic orbital electron populations 1.22031 0.95021 1.02026 1.01722 1.21803 0.95808 0.99246 0.94392 0.91051 1.22449 0.97436 0.98863 0.96971 1.22514 0.97592 0.99708 0.96681 1.22369 1.00085 0.97159 0.95313 1.21555 0.95254 0.97197 0.95017 0.90334 1.21964 0.99731 1.01628 0.93817 1.20436 0.85779 0.78025 0.84463 1.90654 1.15416 1.58708 1.78015 1.48361 1.07672 1.58181 1.20320 1.22531 0.78854 1.00484 0.99594 1.23504 0.97922 0.97607 0.94859 0.89372 1.20958 0.89412 0.96831 0.86509 1.44255 0.99602 1.67635 1.21448 1.19054 0.87248 1.29867 0.99452 0.90411 1.24788 0.96696 1.00999 0.97891 1.69945 1.11961 1.49261 1.25893 0.86109 0.80550 0.78775 0.80272 1.21592 1.21658 1.20713 1.21315 0.86420 0.94349 0.96219 1.22866 0.93158 1.00141 0.96910 0.88713 1.21700 0.96874 0.96959 0.84756 0.92226 0.92955 0.92139 0.92027 0.91578 0.91726 0.91887 0.92169 0.90901 0.88601 0.88894 0.91535 0.90709 0.93234 0.93275 0.93717 0.96425 0.94643 0.92148 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 7.88 37.16 0.29 -0.99 16 2 C -0.09 -0.85 3.50 -89.51 -0.31 -1.16 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -0.99 6.36 -25.07 -0.16 -1.15 16 5 C -0.13 -1.13 6.91 -24.74 -0.17 -1.30 16 6 C -0.11 -1.23 5.43 -25.08 -0.14 -1.36 16 7 C -0.07 -0.78 2.54 -89.51 -0.23 -1.01 16 8 H 0.08 0.98 7.92 -51.92 -0.41 0.57 16 9 C -0.13 -1.53 2.92 -27.89 -0.08 -1.61 16 10 C 0.52 7.95 7.62 -10.99 -0.08 7.87 16 11 O -0.55 -9.82 15.13 5.56 0.08 -9.73 16 12 N -0.61 -9.45 3.31 -171.17 -0.57 -10.02 16 13 C 0.11 1.66 5.87 -2.40 -0.01 1.64 16 14 C -0.12 -2.03 4.18 -87.48 -0.37 -2.40 16 15 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 16 C 0.19 4.23 4.76 -3.54 -0.02 4.21 16 17 N -0.60 -14.78 3.38 -171.80 -0.58 -15.36 16 18 C -0.23 -6.19 10.25 -15.06 -0.15 -6.34 16 19 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 20 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 21 N -0.92 -26.06 10.26 55.49 0.57 -25.49 16 22 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.14 2.89 6.41 -3.39 -0.02 2.87 16 27 C -0.11 -1.84 4.05 -88.48 -0.36 -2.20 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 29 C 0.12 1.87 6.19 -3.61 -0.02 1.84 16 30 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 31 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.53 6.61 -51.93 -0.34 0.19 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.53 7.84 -51.93 -0.41 0.13 16 35 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.67 7.76 -51.93 -0.40 0.27 16 38 H 0.07 0.92 7.66 -51.93 -0.40 0.53 16 39 H 0.10 1.06 6.42 -51.93 -0.33 0.73 16 40 H 0.09 0.97 6.64 -51.93 -0.34 0.62 16 41 H 0.07 0.86 7.61 -51.93 -0.40 0.47 16 42 H 0.07 1.29 7.64 -51.93 -0.40 0.89 16 43 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 44 H 0.05 1.21 7.00 -51.93 -0.36 0.85 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.02 0.37 7.58 -51.93 -0.39 -0.02 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.07 1.07 7.64 -51.93 -0.40 0.67 16 LS Contribution 365.30 15.07 5.50 5.50 Total: -1.00 -30.08 365.30 -10.62 -40.70 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.68 Total: -0.82 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.93 Total: -1.41 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.58 Total: -50.87 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.08 -10.62 -40.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048835721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.798 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds