Wall clock time and date at job start Tue Mar 31 2020 09:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50701 * 119.99922 * 2 1 4 4 C 1.32991 * 120.00055 * 180.02562 * 2 1 3 5 5 C 1.47107 * 119.99905 * 359.97438 * 4 2 1 6 6 O 1.21616 * 119.99986 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00088 * 180.02562 * 5 4 2 8 8 C 1.47182 * 125.66071 * 359.68825 * 7 5 4 9 9 C 1.53678 * 107.11244 * 178.77084 * 8 7 5 10 10 C 1.54535 * 103.64158 * 338.44207 * 9 8 7 11 11 C 1.47482 * 125.66184 * 180.02562 * 7 5 4 12 12 H 1.08991 * 110.35342 * 84.89762 * 11 7 5 13 13 C 1.53000 * 110.35344 * 322.60742 * 11 7 5 14 14 C 1.52272 * 110.67175 * 96.52076 * 9 8 7 15 15 C 1.53316 * 109.41671 * 183.14850 * 14 9 8 16 16 N 1.46919 * 108.70746 * 306.49034 * 15 14 9 17 17 C 1.36942 * 120.56200 * 234.25752 * 16 15 14 18 18 H 1.08000 * 119.99804 * 27.91226 * 17 16 15 19 19 C 1.38811 * 119.99709 * 207.91892 * 17 16 15 20 20 N 1.31621 * 120.00216 * 17.44341 * 19 17 16 21 21 Si 1.86805 * 119.99859 * 197.45064 * 19 17 16 22 22 H 1.48495 * 109.47159 * 59.99387 * 21 19 17 23 23 H 1.48496 * 109.46980 * 179.97438 * 21 19 17 24 24 H 1.48510 * 109.46476 * 299.99536 * 21 19 17 25 25 C 1.46936 * 118.87637 * 54.23140 * 16 15 14 26 26 C 1.52270 * 110.68677 * 220.36538 * 9 8 7 27 27 H 1.08993 * 109.47091 * 240.00248 * 1 2 3 28 28 H 1.09008 * 109.46850 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47068 * 119.99777 * 1 2 3 30 30 H 1.08998 * 109.47253 * 270.00102 * 3 2 1 31 31 H 1.09004 * 109.47195 * 29.99995 * 3 2 1 32 32 H 1.08998 * 109.46978 * 149.99968 * 3 2 1 33 33 H 1.07997 * 120.00390 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.91019 * 298.14101 * 8 7 5 35 35 H 1.09003 * 109.90738 * 59.40401 * 8 7 5 36 36 H 1.08995 * 111.01628 * 276.77072 * 10 9 8 37 37 H 1.08999 * 111.04701 * 152.91157 * 10 9 8 38 38 H 1.08997 * 109.47180 * 61.45327 * 13 11 7 39 39 H 1.08998 * 109.47152 * 181.45811 * 13 11 7 40 40 H 1.09006 * 109.47300 * 301.45594 * 13 11 7 41 41 H 1.09000 * 109.47820 * 303.12991 * 14 9 8 42 42 H 1.08993 * 109.48196 * 63.16091 * 14 9 8 43 43 H 1.09002 * 109.59458 * 186.72425 * 15 14 9 44 44 H 1.09001 * 109.59619 * 66.25807 * 15 14 9 45 45 H 0.97002 * 119.99561 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.59929 * 186.00222 * 25 16 15 47 47 H 1.09000 * 109.59899 * 65.52693 * 25 16 15 48 48 H 1.09007 * 109.47906 * 296.83193 * 26 9 8 49 49 H 1.09001 * 109.48162 * 56.86405 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2203 -2.4257 0.0004 7 7 2.1103 -3.5929 -0.0005 8 6 3.5749 -3.7381 -0.0070 9 6 3.8802 -5.2439 0.0271 10 6 2.5875 -5.8648 0.6029 11 6 1.5025 -4.9366 -0.0011 12 1 1.2638 -5.2443 -1.0190 13 6 0.2444 -4.9520 0.8696 14 6 4.1359 -5.7725 -1.3778 15 6 4.3591 -7.2882 -1.3192 16 7 5.4206 -7.5708 -0.3436 17 6 6.5170 -8.3090 -0.7017 18 1 6.8542 -8.3121 -1.7277 19 6 7.1948 -9.0534 0.2539 20 7 6.6157 -9.3339 1.4021 21 14 8.9291 -9.6567 -0.0894 22 1 9.8184 -8.4932 -0.3352 23 1 9.4279 -10.4219 1.0814 24 1 8.9196 -10.5344 -1.2874 25 6 5.2861 -7.0475 1.0228 26 6 5.0571 -5.5333 0.9490 27 1 -0.3633 -0.5138 0.8899 28 1 -0.3633 1.0278 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 2.4422 1.6198 -1.0276 31 1 1.6714 2.0648 0.5138 32 1 3.2129 1.1748 0.5138 33 1 3.2520 -1.1518 -0.0001 34 1 3.9877 -3.2962 -0.9139 35 1 3.9999 -3.2532 0.8719 36 1 2.5819 -5.8164 1.6918 37 1 2.4593 -6.8911 0.2588 38 1 -0.4874 -4.2541 0.4629 39 1 -0.1781 -5.9567 0.8798 40 1 0.5026 -4.6560 1.8864 41 1 3.2746 -5.5561 -2.0099 42 1 5.0212 -5.2904 -1.7921 43 1 4.6595 -7.6517 -2.3020 44 1 3.4377 -7.7818 -1.0103 45 1 7.0896 -9.8538 2.0700 46 1 6.1977 -7.2524 1.5842 47 1 4.4369 -7.5222 1.5142 48 1 5.9522 -5.0489 0.5587 49 1 4.8410 -5.1493 1.9459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086899607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:30 Heat of formation + Delta-G solvation = -4.310980 kcal Electronic energy + Delta-G solvation = -26569.072125 eV Core-core repulsion = 23110.598791 eV Total energy + Delta-G solvation = -3458.473334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.55160 -38.76697 -36.22635 -35.26593 -33.07911 -31.87728 -30.92129 -29.90637 -28.10139 -27.84408 -26.93132 -25.90029 -24.00746 -22.72246 -22.01402 -20.94100 -19.74603 -18.12908 -17.92536 -17.00129 -16.43380 -16.05311 -15.01221 -14.85731 -14.43744 -14.35958 -13.98833 -13.89389 -13.73304 -13.55071 -13.36220 -13.06617 -12.75462 -12.58355 -12.49761 -12.41252 -12.09561 -12.05003 -11.78325 -11.67601 -11.56155 -11.41506 -11.17169 -10.91513 -10.72114 -10.64005 -10.45379 -10.26212 -10.07300 -9.84210 -9.56092 -9.43453 -9.28847 -9.19336 -8.47502 -8.39426 -6.66634 -5.79718 -3.21562 1.30635 3.14114 3.34717 3.37529 3.43585 3.44663 4.46699 4.49054 4.67086 4.74918 4.86949 5.08324 5.10082 5.24087 5.27407 5.29869 5.37490 5.40301 5.50599 5.52586 5.59273 5.63459 5.73514 5.74285 5.75141 5.83767 5.93942 5.95446 6.07342 6.11365 6.19626 6.25566 6.33749 6.36148 6.36869 6.46309 6.51854 6.60712 6.65957 6.69723 6.75082 6.85194 6.97518 7.35538 7.65416 7.71814 7.78854 8.33011 8.44749 9.21059 9.84655 10.41148 11.28571 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.027018 B = 0.003229 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.099254 B = 8669.846162 C = 9179.095561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.040 4.040 3 C -0.126 4.126 4 C -0.229 4.229 5 C 0.560 3.440 6 O -0.547 6.547 7 N -0.609 5.609 8 C 0.108 3.892 9 C -0.056 4.056 10 C -0.118 4.118 11 C 0.135 3.865 12 H 0.072 0.928 13 C -0.162 4.162 14 C -0.119 4.119 15 C 0.146 3.854 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.173 3.827 26 C -0.126 4.126 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.020 0.980 45 H 0.254 0.746 46 H 0.087 0.913 47 H 0.020 0.980 48 H 0.057 0.943 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.070 16.881 -1.602 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.042 4.042 3 C -0.182 4.182 4 C -0.250 4.250 5 C 0.352 3.648 6 O -0.428 6.428 7 N -0.342 5.342 8 C -0.014 4.014 9 C -0.057 4.057 10 C -0.156 4.156 11 C 0.033 3.967 12 H 0.090 0.910 13 C -0.220 4.220 14 C -0.158 4.158 15 C 0.020 3.980 16 N -0.313 5.313 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.047 3.953 26 C -0.166 4.166 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.038 0.962 48 H 0.075 0.925 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.664 16.815 -1.463 19.449 hybrid contribution 1.219 -0.382 -0.110 1.283 sum -8.445 16.433 -1.573 18.542 Atomic orbital electron populations 1.21019 0.90827 1.00748 1.04371 1.22547 0.96888 0.94391 0.90408 1.21004 1.00087 0.94322 1.02800 1.22444 1.00122 0.91947 1.10438 1.18152 0.86801 0.83236 0.76600 1.90690 1.13506 1.87039 1.51533 1.48546 1.07539 1.05527 1.72554 1.22235 0.79875 0.98182 1.01154 1.20950 0.95907 0.91492 0.97302 1.22954 0.92844 0.99337 1.00467 1.21963 0.93924 0.81538 0.99321 0.91019 1.22150 0.97903 1.02322 0.99581 1.21923 1.00141 0.99647 0.94106 1.20945 0.91758 0.91409 0.93935 1.44032 1.19853 1.59844 1.07621 1.19143 1.03092 1.20876 0.95141 0.91816 1.25021 0.99355 0.97600 0.97613 1.70022 1.35941 1.40818 1.07902 0.86392 0.84975 0.78402 0.77133 1.21070 1.21667 1.20922 1.20784 1.01158 0.86571 0.86742 1.22114 0.95907 1.01936 0.96614 0.89975 0.93234 0.90034 0.90439 0.91080 0.91162 0.85874 0.91700 0.91628 0.90891 0.89135 0.89841 0.92281 0.92992 0.93134 0.92130 0.92872 0.96241 0.93603 0.89477 0.96226 0.92465 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 8.33 36.01 0.30 -0.88 16 2 C -0.04 -0.41 6.11 -101.17 -0.62 -1.03 16 3 C -0.13 -0.88 9.98 36.01 0.36 -0.52 16 4 C -0.23 -2.66 9.14 -37.80 -0.35 -3.01 16 5 C 0.56 8.02 7.55 -12.66 -0.10 7.93 16 6 O -0.55 -8.75 10.74 5.26 0.06 -8.70 16 7 N -0.61 -8.60 3.25 -164.58 -0.53 -9.13 16 8 C 0.11 1.46 5.24 -3.32 -0.02 1.44 16 9 C -0.06 -0.87 0.55 -154.09 -0.09 -0.95 16 10 C -0.12 -1.79 4.34 -24.85 -0.11 -1.90 16 11 C 0.14 1.93 3.44 -66.32 -0.23 1.70 16 12 H 0.07 1.04 7.74 -51.93 -0.40 0.64 16 13 C -0.16 -2.23 8.72 37.16 0.32 -1.91 16 14 C -0.12 -1.95 4.74 -26.94 -0.13 -2.08 16 15 C 0.15 2.91 6.19 -3.65 -0.02 2.89 16 16 N -0.59 -14.17 2.98 -172.16 -0.51 -14.69 16 17 C -0.25 -6.77 9.57 -15.06 -0.14 -6.91 16 18 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 19 C 0.00 0.07 4.90 -17.43 -0.09 -0.01 16 20 N -0.90 -25.65 11.20 55.49 0.62 -25.03 16 21 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 C 0.17 3.91 5.04 -3.64 -0.02 3.89 16 26 C -0.13 -2.24 4.72 -26.94 -0.13 -2.36 16 27 H 0.08 0.98 7.22 -51.93 -0.37 0.60 16 28 H 0.05 0.40 7.94 -51.92 -0.41 -0.01 16 29 H 0.08 0.97 7.22 -51.93 -0.37 0.59 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 32 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.12 1.26 7.38 -52.49 -0.39 0.87 16 34 H 0.06 0.82 7.83 -51.93 -0.41 0.42 16 35 H 0.07 0.84 7.78 -51.93 -0.40 0.43 16 36 H 0.07 1.12 7.92 -51.93 -0.41 0.71 16 37 H 0.09 1.48 6.08 -51.93 -0.32 1.16 16 38 H 0.08 1.25 5.89 -51.93 -0.31 0.95 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.76 7.47 -51.93 -0.39 0.37 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.02 0.40 6.47 -51.93 -0.34 0.06 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.09 2.25 6.02 -51.93 -0.31 1.93 16 47 H 0.02 0.47 7.55 -51.93 -0.39 0.07 16 48 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 49 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -29.30 367.21 -9.46 -38.76 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.56 Total: 0.65 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.04 Total: -3.70 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.43 Total: -48.85 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.06 Total: -8.70 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.30 -9.46 -38.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086899607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.447 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds