Wall clock time and date at job start Tue Mar 31 2020 09:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.47100 * 120.00207 * 2 1 4 4 O 1.21617 * 119.99650 * 79.84018 * 3 2 1 5 5 N 1.34774 * 120.00297 * 259.85144 * 3 2 1 6 6 C 1.48119 * 127.03461 * 184.72346 * 5 3 2 7 7 C 1.54596 * 103.42408 * 219.28000 * 6 5 3 8 8 H 1.08999 * 110.57015 * 81.16893 * 7 6 5 9 9 C 1.52992 * 110.98867 * 204.37351 * 7 6 5 10 10 N 1.46500 * 109.47244 * 288.65187 * 9 7 6 11 11 C 1.36939 * 120.00404 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99368 * 0.02562 * 11 10 9 13 13 C 1.38806 * 120.00487 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99929 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00343 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47194 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47431 * 120.00307 * 15 13 11 18 18 H 1.48505 * 109.47262 * 240.00285 * 15 13 11 19 19 C 1.54618 * 102.91092 * 322.86613 * 7 6 5 20 20 H 1.08997 * 110.33126 * 262.81011 * 19 7 6 21 21 C 1.52998 * 110.41451 * 140.63290 * 19 7 6 22 22 C 1.47485 * 127.03341 * 5.03128 * 5 3 2 23 23 C 1.32996 * 120.00220 * 180.02562 * 2 1 3 24 24 C 1.51455 * 126.33728 * 359.97438 * 23 2 1 25 25 C 1.54281 * 106.87959 * 180.36508 * 24 23 2 26 26 C 1.55087 * 103.70599 * 23.13084 * 25 24 23 27 27 C 1.51842 * 126.34597 * 180.02562 * 23 2 1 28 28 H 1.09002 * 109.46773 * 264.81138 * 1 2 3 29 29 H 1.08993 * 109.47272 * 24.81166 * 1 2 3 30 30 H 1.09003 * 109.46846 * 144.81448 * 1 2 3 31 31 H 1.08995 * 110.66181 * 337.76475 * 6 5 3 32 32 H 1.09003 * 110.66041 * 100.87416 * 6 5 3 33 33 H 1.09007 * 109.47313 * 48.64999 * 9 7 6 34 34 H 1.08999 * 109.47434 * 168.65296 * 9 7 6 35 35 H 0.96998 * 120.00248 * 0.02562 * 10 9 7 36 36 H 0.96993 * 120.00193 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.47197 * 302.88005 * 21 19 7 38 38 H 1.09004 * 109.46664 * 62.87465 * 21 19 7 39 39 H 1.08997 * 109.47524 * 182.87223 * 21 19 7 40 40 H 1.09007 * 109.91424 * 273.88464 * 22 5 3 41 41 H 1.08996 * 109.91563 * 35.16353 * 22 5 3 42 42 H 1.08998 * 109.98112 * 299.72623 * 24 23 2 43 43 H 1.09000 * 109.98487 * 60.99414 * 24 23 2 44 44 H 1.08997 * 110.57099 * 141.71369 * 25 24 23 45 45 H 1.09002 * 110.56344 * 264.57479 * 25 24 23 46 46 H 1.09000 * 110.82303 * 204.70227 * 26 25 24 47 47 H 1.08996 * 111.00372 * 81.20635 * 26 25 24 48 48 H 1.09002 * 110.43897 * 274.92546 * 27 23 2 49 49 H 1.09007 * 110.43850 * 37.31470 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 2.3857 1.8934 1.0368 5 7 2.7577 1.7547 -1.1489 6 6 3.6020 2.9607 -1.3122 7 6 3.0824 3.5873 -2.6265 8 1 2.1780 4.1673 -2.4429 9 6 4.1575 4.4565 -3.2817 10 7 4.3451 5.6776 -2.4943 11 6 5.2633 6.6132 -2.8900 12 1 5.8490 6.4511 -3.7829 13 6 5.4407 7.7705 -2.1443 14 7 4.7265 7.9683 -1.0565 15 14 6.6927 9.0471 -2.6845 16 1 7.3603 8.5897 -3.9297 17 1 6.0053 10.3390 -2.9366 18 1 7.7086 9.2271 -1.6164 19 6 2.7714 2.3499 -3.4999 20 1 3.6031 2.1431 -4.1734 21 6 1.4845 2.5695 -4.2976 22 6 2.5908 1.1912 -2.5016 23 6 2.1721 -1.1518 -0.0005 24 6 1.5643 -2.5390 -0.0006 25 6 2.7367 -3.5418 0.0081 26 6 3.9133 -2.7263 0.6045 27 6 3.6812 -1.3195 0.0000 28 1 -0.3633 -0.0929 1.0235 29 1 -0.3633 0.9327 -0.4312 30 1 -0.3633 -0.8399 -0.5922 31 1 3.4587 3.6464 -0.4772 32 1 4.6521 2.6848 -1.4088 33 1 5.0960 3.9036 -3.3238 34 1 3.8455 4.7202 -4.2923 35 1 3.8194 5.8231 -1.6923 36 1 4.8507 8.7767 -0.5351 37 1 0.6650 2.7869 -3.6126 38 1 1.6192 3.4082 -4.9807 39 1 1.2525 1.6701 -4.8679 40 1 3.3459 0.4257 -2.6807 41 1 1.5934 0.7639 -2.6053 42 1 0.9499 -2.6765 0.8892 43 1 0.9594 -2.6807 -0.8963 44 1 2.5037 -4.3979 0.6412 45 1 2.9705 -3.8663 -1.0058 46 1 4.8709 -3.1342 0.2809 47 1 3.8550 -2.6948 1.6925 48 1 4.0696 -1.2737 -1.0175 49 1 4.1490 -0.5546 0.6198 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105998564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:49 Heat of formation + Delta-G solvation = -30.231857 kcal Electronic energy + Delta-G solvation = -25867.244046 eV Core-core repulsion = 22407.646699 eV Total energy + Delta-G solvation = -3459.597348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.23187 -38.56945 -37.54936 -34.62304 -33.64434 -32.61628 -31.37843 -29.42492 -28.97268 -27.85362 -26.48242 -25.75356 -24.05528 -22.95150 -21.32016 -21.04783 -20.04466 -19.87960 -17.96038 -16.99413 -16.61295 -16.04767 -15.91263 -15.66296 -14.67111 -14.47828 -14.24644 -13.78335 -13.63243 -13.59321 -13.44865 -13.19549 -13.02910 -12.92960 -12.57867 -12.48558 -12.42231 -12.11069 -11.97914 -11.78648 -11.41647 -11.36047 -11.29723 -11.21368 -11.10365 -10.93699 -10.85007 -10.55107 -10.44518 -10.32025 -9.97703 -9.70528 -9.62790 -8.87731 -8.86041 -8.52951 -6.90038 -5.73213 -3.02719 1.61584 2.71439 3.13132 3.45393 3.50440 3.53187 4.11984 4.39227 4.51143 4.62202 4.64048 4.69463 4.81389 4.87509 4.95460 5.06542 5.13234 5.29274 5.32362 5.42386 5.46681 5.49355 5.51617 5.53287 5.54421 5.57635 5.60776 5.62840 5.71632 5.74806 5.80952 5.84597 5.84643 5.97872 6.00653 6.09993 6.12261 6.19463 6.22086 6.25382 6.43264 6.50523 6.54998 6.73603 6.86681 7.67702 7.72416 8.26658 8.44893 9.56080 10.13596 10.47846 11.49450 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.003015 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.978877 B = 9284.641980 C = 9600.842133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.155 4.155 3 C 0.577 3.423 4 O -0.536 6.536 5 N -0.615 5.615 6 C 0.113 3.887 7 C -0.101 4.101 8 H 0.083 0.917 9 C 0.166 3.834 10 N -0.733 5.733 11 C -0.240 4.240 12 H 0.071 0.929 13 C -0.014 4.014 14 N -0.931 5.931 15 Si 0.906 3.094 16 H -0.281 1.281 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.101 4.101 20 H 0.087 0.913 21 C -0.140 4.140 22 C 0.110 3.890 23 C -0.087 4.087 24 C -0.091 4.091 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.100 4.100 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 -25.178 -2.550 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.158 4.158 3 C 0.366 3.634 4 O -0.413 6.413 5 N -0.348 5.348 6 C -0.009 4.009 7 C -0.121 4.121 8 H 0.101 0.899 9 C 0.038 3.962 10 N -0.377 5.377 11 C -0.371 4.371 12 H 0.088 0.912 13 C -0.210 4.210 14 N -0.579 5.579 15 Si 0.738 3.262 16 H -0.206 1.206 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.120 4.120 20 H 0.105 0.895 21 C -0.198 4.198 22 C -0.014 4.014 23 C -0.088 4.088 24 C -0.128 4.128 25 C -0.161 4.161 26 C -0.159 4.159 27 C -0.137 4.137 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.087 -24.805 -1.995 26.166 hybrid contribution 0.559 0.881 -0.028 1.044 sum -7.528 -23.924 -2.023 25.162 Atomic orbital electron populations 1.20577 0.89695 1.02661 1.02592 1.20721 0.96512 0.91589 1.06936 1.17973 0.78241 0.84877 0.82342 1.90843 1.59502 1.59626 1.31314 1.48868 1.50984 1.28568 1.06391 1.22515 0.93812 0.85756 0.98792 1.22501 1.00396 0.95167 0.94033 0.89865 1.20618 0.93895 0.87658 0.94073 1.42390 1.47122 1.18287 1.29950 1.19247 1.13230 0.97579 1.07082 0.91150 1.24757 1.00095 0.98557 0.97582 1.69678 1.43224 1.27703 1.17332 0.86126 0.80809 0.81698 0.77597 1.20582 1.21894 1.21883 1.22095 0.99151 0.94373 0.96411 0.89506 1.21824 0.96460 1.01636 0.99865 1.22149 1.01380 0.96150 0.81677 1.22402 0.95902 0.93454 0.97061 1.21176 0.98073 0.91169 1.02367 1.22385 0.94905 0.97562 1.01239 1.22498 0.98437 0.94517 1.00479 1.21506 0.92590 0.97915 1.01688 0.90868 0.91670 0.91185 0.89320 0.90789 0.96154 0.95924 0.78193 0.93528 0.92657 0.91869 0.92807 0.91897 0.90962 0.90487 0.90440 0.91271 0.91269 0.91116 0.91176 0.90062 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.69 36.01 0.35 -0.60 16 2 C -0.15 -1.87 4.80 -102.84 -0.49 -2.36 16 3 C 0.58 9.25 6.40 -12.67 -0.08 9.16 16 4 O -0.54 -11.06 17.30 5.26 0.09 -10.97 16 5 N -0.61 -9.03 3.29 -171.37 -0.56 -9.59 16 6 C 0.11 1.91 6.46 -2.31 -0.01 1.90 16 7 C -0.10 -1.62 2.60 -88.93 -0.23 -1.86 16 8 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 9 C 0.17 3.24 5.58 -4.05 -0.02 3.22 16 10 N -0.73 -18.64 5.52 -59.91 -0.33 -18.97 16 11 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 12 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 13 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 14 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 15 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 18 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 19 C -0.10 -1.20 3.17 -89.25 -0.28 -1.48 16 20 H 0.09 0.97 7.85 -51.93 -0.41 0.56 16 21 C -0.14 -1.47 8.90 37.16 0.33 -1.14 16 22 C 0.11 1.23 6.37 -2.98 -0.02 1.21 16 23 C -0.09 -0.89 6.12 -100.23 -0.61 -1.50 16 24 C -0.09 -0.67 5.60 -26.84 -0.15 -0.82 16 25 C -0.12 -0.80 6.88 -24.96 -0.17 -0.97 16 26 C -0.12 -0.96 6.95 -24.65 -0.17 -1.13 16 27 C -0.10 -1.01 6.09 -26.34 -0.16 -1.17 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.07 0.50 7.35 -51.93 -0.38 0.12 16 31 H 0.09 1.79 7.82 -51.93 -0.41 1.38 16 32 H 0.07 1.25 7.95 -51.93 -0.41 0.84 16 33 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 36 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.71 7.34 -51.93 -0.38 0.33 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.48 7.92 -51.93 -0.41 0.07 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.90 7.80 -51.93 -0.41 0.50 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -33.47 390.63 -10.18 -43.64 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -8.98 Total: 5.31 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.98 Total: -4.96 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.17 Total: -56.58 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.47 -10.18 -43.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105998564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.410 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds