Wall clock time and date at job start Tue Mar 31 2020 09:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.47100 * 120.00207 * 2 1 4 4 O 1.21617 * 119.99650 * 79.84018 * 3 2 1 5 5 N 1.34774 * 120.00297 * 259.85144 * 3 2 1 6 6 C 1.48119 * 127.03461 * 184.72346 * 5 3 2 7 7 C 1.54596 * 103.42408 * 219.28000 * 6 5 3 8 8 H 1.08999 * 110.57015 * 81.16893 * 7 6 5 9 9 C 1.52992 * 110.98867 * 204.37351 * 7 6 5 10 10 N 1.46500 * 109.47244 * 288.65187 * 9 7 6 11 11 C 1.36939 * 120.00404 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99368 * 0.02562 * 11 10 9 13 13 C 1.38806 * 120.00487 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99929 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00343 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47194 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47431 * 120.00307 * 15 13 11 18 18 H 1.48505 * 109.47262 * 240.00285 * 15 13 11 19 19 C 1.54618 * 102.91092 * 322.86613 * 7 6 5 20 20 H 1.08997 * 110.33126 * 262.81011 * 19 7 6 21 21 C 1.52998 * 110.41451 * 140.63290 * 19 7 6 22 22 C 1.47485 * 127.03341 * 5.03128 * 5 3 2 23 23 C 1.32996 * 120.00220 * 180.02562 * 2 1 3 24 24 C 1.51455 * 126.33728 * 359.97438 * 23 2 1 25 25 C 1.54281 * 106.87959 * 180.36508 * 24 23 2 26 26 C 1.55087 * 103.70599 * 23.13084 * 25 24 23 27 27 C 1.51842 * 126.34597 * 180.02562 * 23 2 1 28 28 H 1.09002 * 109.46773 * 264.81138 * 1 2 3 29 29 H 1.08993 * 109.47272 * 24.81166 * 1 2 3 30 30 H 1.09003 * 109.46846 * 144.81448 * 1 2 3 31 31 H 1.08995 * 110.66181 * 337.76475 * 6 5 3 32 32 H 1.09003 * 110.66041 * 100.87416 * 6 5 3 33 33 H 1.09007 * 109.47313 * 48.64999 * 9 7 6 34 34 H 1.08999 * 109.47434 * 168.65296 * 9 7 6 35 35 H 0.96998 * 120.00248 * 0.02562 * 10 9 7 36 36 H 0.96993 * 120.00193 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.47197 * 302.88005 * 21 19 7 38 38 H 1.09004 * 109.46664 * 62.87465 * 21 19 7 39 39 H 1.08997 * 109.47524 * 182.87223 * 21 19 7 40 40 H 1.09007 * 109.91424 * 273.88464 * 22 5 3 41 41 H 1.08996 * 109.91563 * 35.16353 * 22 5 3 42 42 H 1.08998 * 109.98112 * 299.72623 * 24 23 2 43 43 H 1.09000 * 109.98487 * 60.99414 * 24 23 2 44 44 H 1.08997 * 110.57099 * 141.71369 * 25 24 23 45 45 H 1.09002 * 110.56344 * 264.57479 * 25 24 23 46 46 H 1.09000 * 110.82303 * 204.70227 * 26 25 24 47 47 H 1.08996 * 111.00372 * 81.20635 * 26 25 24 48 48 H 1.09002 * 110.43897 * 274.92546 * 27 23 2 49 49 H 1.09007 * 110.43850 * 37.31470 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 2.3857 1.8934 1.0368 5 7 2.7577 1.7547 -1.1489 6 6 3.6020 2.9607 -1.3122 7 6 3.0824 3.5873 -2.6265 8 1 2.1780 4.1673 -2.4429 9 6 4.1575 4.4565 -3.2817 10 7 4.3451 5.6776 -2.4943 11 6 5.2633 6.6132 -2.8900 12 1 5.8490 6.4511 -3.7829 13 6 5.4407 7.7705 -2.1443 14 7 4.7265 7.9683 -1.0565 15 14 6.6927 9.0471 -2.6845 16 1 7.3603 8.5897 -3.9297 17 1 6.0053 10.3390 -2.9366 18 1 7.7086 9.2271 -1.6164 19 6 2.7714 2.3499 -3.4999 20 1 3.6031 2.1431 -4.1734 21 6 1.4845 2.5695 -4.2976 22 6 2.5908 1.1912 -2.5016 23 6 2.1721 -1.1518 -0.0005 24 6 1.5643 -2.5390 -0.0006 25 6 2.7367 -3.5418 0.0081 26 6 3.9133 -2.7263 0.6045 27 6 3.6812 -1.3195 0.0000 28 1 -0.3633 -0.0929 1.0235 29 1 -0.3633 0.9327 -0.4312 30 1 -0.3633 -0.8399 -0.5922 31 1 3.4587 3.6464 -0.4772 32 1 4.6521 2.6848 -1.4088 33 1 5.0960 3.9036 -3.3238 34 1 3.8455 4.7202 -4.2923 35 1 3.8194 5.8231 -1.6923 36 1 4.8507 8.7767 -0.5351 37 1 0.6650 2.7869 -3.6126 38 1 1.6192 3.4082 -4.9807 39 1 1.2525 1.6701 -4.8679 40 1 3.3459 0.4257 -2.6807 41 1 1.5934 0.7639 -2.6053 42 1 0.9499 -2.6765 0.8892 43 1 0.9594 -2.6807 -0.8963 44 1 2.5037 -4.3979 0.6412 45 1 2.9705 -3.8663 -1.0058 46 1 4.8709 -3.1342 0.2809 47 1 3.8550 -2.6948 1.6925 48 1 4.0696 -1.2737 -1.0175 49 1 4.1490 -0.5546 0.6198 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105998564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:48 Heat of formation + Delta-G solvation = -50.377046 kcal Electronic energy + Delta-G solvation = -25868.117607 eV Core-core repulsion = 22407.646699 eV Total energy + Delta-G solvation = -3460.470909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40894 -39.53622 -38.65831 -36.46512 -34.63877 -33.88453 -33.05995 -30.76618 -29.91262 -28.53118 -27.58831 -27.19970 -25.46844 -24.37361 -22.63788 -21.81308 -21.15462 -20.96342 -19.33418 -18.71643 -17.64052 -17.22351 -16.94236 -16.62610 -16.43241 -15.65045 -15.59046 -15.22158 -14.92478 -14.71778 -14.42995 -14.36132 -14.20125 -13.91735 -13.69615 -13.46830 -13.29605 -13.16829 -13.14438 -13.01375 -12.86359 -12.76468 -12.45302 -12.13163 -12.07504 -12.00500 -11.97292 -11.92959 -11.77658 -11.55655 -11.47334 -11.46021 -10.98262 -10.89026 -9.78258 -9.70522 -9.02015 -7.95909 -5.25880 0.75479 1.45694 1.47279 1.49372 1.57387 1.96933 2.54780 3.26907 3.37853 3.50147 3.56868 3.74432 3.78651 3.86768 4.11556 4.14067 4.18627 4.21500 4.36152 4.37653 4.47288 4.51194 4.53395 4.64243 4.70545 4.72481 4.77491 4.80931 4.82578 4.83818 4.85525 4.90804 5.02030 5.04609 5.07493 5.09454 5.12998 5.19677 5.22426 5.24339 5.33498 5.41771 5.45083 5.48125 5.53327 5.70784 6.25400 6.49450 7.02643 7.31053 8.07067 8.28937 9.28074 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.003015 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.978877 B = 9284.641980 C = 9600.842133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.179 4.179 3 C 0.570 3.430 4 O -0.599 6.599 5 N -0.612 5.612 6 C 0.115 3.885 7 C -0.091 4.091 8 H 0.064 0.936 9 C 0.166 3.834 10 N -0.749 5.749 11 C -0.242 4.242 12 H 0.081 0.919 13 C -0.081 4.081 14 N -0.973 5.973 15 Si 0.976 3.024 16 H -0.261 1.261 17 H -0.293 1.293 18 H -0.296 1.296 19 C -0.090 4.090 20 H 0.105 0.895 21 C -0.137 4.137 22 C 0.110 3.890 23 C -0.071 4.071 24 C -0.089 4.089 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.108 4.108 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.033 0.967 35 H 0.370 0.630 36 H 0.250 0.750 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.092 0.908 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 -28.590 -5.237 30.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.182 4.182 3 C 0.361 3.639 4 O -0.481 6.481 5 N -0.343 5.343 6 C -0.008 4.008 7 C -0.111 4.111 8 H 0.082 0.918 9 C 0.039 3.961 10 N -0.391 5.391 11 C -0.373 4.373 12 H 0.099 0.901 13 C -0.273 4.273 14 N -0.624 5.624 15 Si 0.805 3.195 16 H -0.185 1.185 17 H -0.221 1.221 18 H -0.223 1.223 19 C -0.109 4.109 20 H 0.123 0.877 21 C -0.194 4.194 22 C -0.012 4.012 23 C -0.072 4.072 24 C -0.125 4.125 25 C -0.154 4.154 26 C -0.159 4.159 27 C -0.145 4.145 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.201 0.799 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.110 0.890 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.491 -28.276 -4.765 29.905 hybrid contribution 0.746 1.877 0.794 2.171 sum -7.746 -26.398 -3.971 27.796 Atomic orbital electron populations 1.20599 0.87792 1.03479 1.03052 1.20631 0.97525 0.89800 1.10229 1.18810 0.77631 0.85859 0.81556 1.90797 1.61911 1.61801 1.33591 1.48954 1.49913 1.27602 1.07877 1.22279 0.94400 0.86366 0.97750 1.22315 0.98257 0.96283 0.94265 0.91781 1.20791 0.95298 0.86092 0.93885 1.42666 1.46523 1.19871 1.30090 1.19707 1.12948 0.97843 1.06830 0.90109 1.25648 1.02594 1.01056 0.97984 1.69859 1.45432 1.28214 1.18919 0.85029 0.78155 0.78705 0.77607 1.18525 1.22068 1.22321 1.22104 1.00793 0.91855 0.96180 0.87709 1.21811 0.95098 1.02948 0.99562 1.22406 1.03630 0.96133 0.78993 1.22724 0.96005 0.94438 0.94012 1.21281 0.98626 0.88825 1.03813 1.22399 0.93393 0.97406 1.02217 1.22513 1.00039 0.93290 1.00026 1.21602 0.92653 0.98425 1.01774 0.91106 0.92774 0.87862 0.93933 0.90920 0.95355 0.94894 0.79862 0.94136 0.93417 0.92590 0.89547 0.89555 0.88575 0.89727 0.88053 0.89787 0.89885 0.90015 0.91989 0.89009 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 9.69 71.24 0.69 -0.94 16 2 C -0.18 -4.19 4.80 -18.70 -0.09 -4.28 16 3 C 0.57 19.10 6.40 86.57 0.55 19.66 16 4 O -0.60 -26.88 17.30 -4.08 -0.07 -26.95 16 5 N -0.61 -18.33 3.29 -814.33 -2.68 -21.01 16 6 C 0.11 4.14 6.46 86.61 0.56 4.70 16 7 C -0.09 -2.98 2.60 -9.70 -0.03 -3.00 16 8 H 0.06 2.34 7.86 -2.39 -0.02 2.32 16 9 C 0.17 6.49 5.58 86.38 0.48 6.97 16 10 N -0.75 -39.25 5.52 -343.46 -1.90 -41.15 16 11 C -0.24 -13.76 9.99 84.03 0.84 -12.92 16 12 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 13 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 14 N -0.97 -62.35 13.06 21.65 0.28 -62.07 16 15 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 18 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 19 C -0.09 -1.94 3.17 -9.90 -0.03 -1.97 16 20 H 0.10 1.96 7.85 -2.39 -0.02 1.94 16 21 C -0.14 -2.48 8.90 71.98 0.64 -1.84 16 22 C 0.11 2.20 6.37 86.53 0.55 2.75 16 23 C -0.07 -1.31 6.12 -17.01 -0.10 -1.41 16 24 C -0.09 -0.95 5.60 30.52 0.17 -0.78 16 25 C -0.12 -1.05 6.88 31.74 0.22 -0.84 16 26 C -0.12 -1.66 6.95 31.95 0.22 -1.44 16 27 C -0.11 -2.05 6.09 30.85 0.19 -1.87 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.05 8.08 -2.39 -0.02 1.04 16 30 H 0.10 1.09 7.35 -2.39 -0.02 1.08 16 31 H 0.04 1.90 7.82 -2.39 -0.02 1.88 16 32 H 0.07 2.59 7.95 -2.39 -0.02 2.57 16 33 H 0.03 1.09 8.00 -2.38 -0.02 1.07 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.37 21.26 7.67 -92.71 -0.71 20.55 16 36 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.10 1.54 7.34 -2.39 -0.02 1.52 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 0.70 7.92 -2.39 -0.02 0.68 16 44 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.04 0.97 7.80 -2.38 -0.02 0.95 16 Total: -1.00 -77.89 390.63 3.19 -74.70 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.20 Total: 28.67 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 5.33 Total: -1.54 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -4.30 Total: -124.22 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.07 Total: -26.95 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -77.89 3.19 -74.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105998564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.322 kcal (2) G-P(sol) polarization free energy of solvation -77.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds