Wall clock time and date at job start Tue Mar 31 2020 09:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99609 * 2 1 4 4 C 1.52998 * 109.46757 * 125.41456 * 3 2 1 5 5 C 1.52997 * 109.47085 * 185.71920 * 4 3 2 6 6 C 1.50702 * 109.47189 * 64.99657 * 5 4 3 7 7 C 1.31004 * 120.00177 * 125.00054 * 6 5 4 8 8 C 1.50700 * 109.47479 * 65.71845 * 4 3 2 9 9 O 1.21278 * 119.99628 * 22.41551 * 8 4 3 10 10 N 1.34773 * 120.00159 * 202.41641 * 8 4 3 11 11 C 1.46923 * 120.62891 * 4.55935 * 10 8 4 12 12 C 1.53626 * 108.54543 * 126.37020 * 11 10 8 13 13 C 1.53041 * 109.24080 * 54.85095 * 12 11 10 14 14 H 1.09000 * 109.46064 * 58.53490 * 13 12 11 15 15 N 1.46508 * 109.46063 * 178.49326 * 13 12 11 16 16 C 1.36932 * 119.99783 * 275.07306 * 15 13 12 17 17 H 1.08003 * 120.00451 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99862 * 180.02562 * 16 15 13 19 19 N 1.31623 * 120.00152 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00126 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47131 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47338 * 119.99616 * 20 18 16 23 23 H 1.48498 * 109.47358 * 239.99673 * 20 18 16 24 24 C 1.53040 * 109.54138 * 298.51456 * 13 12 11 25 25 C 1.46923 * 120.63224 * 184.83970 * 10 8 4 26 26 H 1.09002 * 109.58884 * 113.79809 * 25 10 8 27 27 C 1.53002 * 109.58714 * 353.37312 * 25 10 8 28 28 H 1.07993 * 120.00343 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99820 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99915 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47254 * 5.40990 * 3 2 1 32 32 H 1.09001 * 109.46872 * 245.40947 * 3 2 1 33 33 H 1.09005 * 109.47040 * 305.72027 * 4 3 2 34 34 H 1.09000 * 109.47621 * 184.99401 * 5 4 3 35 35 H 1.09000 * 109.47458 * 305.00033 * 5 4 3 36 36 H 1.08005 * 119.99974 * 305.00438 * 6 5 4 37 37 H 1.07993 * 120.00047 * 180.02562 * 7 6 5 38 38 H 1.08000 * 119.99500 * 0.02562 * 7 6 5 39 39 H 1.09001 * 109.58640 * 246.19862 * 11 10 8 40 40 H 1.08996 * 109.58859 * 6.62736 * 11 10 8 41 41 H 1.09005 * 109.63369 * 294.86721 * 12 11 10 42 42 H 1.08997 * 109.45873 * 174.73879 * 12 11 10 43 43 H 0.96993 * 119.99789 * 95.06829 * 15 13 12 44 44 H 0.96996 * 120.00554 * 180.02562 * 19 18 16 45 45 H 1.08994 * 109.49668 * 301.41590 * 24 13 12 46 46 H 1.09001 * 109.49897 * 181.31377 * 24 13 12 47 47 H 1.08993 * 109.47315 * 64.19379 * 27 25 10 48 48 H 1.09000 * 109.47484 * 184.19880 * 27 25 10 49 49 H 1.08998 * 109.47013 * 304.19732 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0423 1.3289 1.1756 5 6 3.7036 2.7059 1.2609 6 6 2.6616 3.7442 1.5887 7 6 2.8212 4.5275 2.6265 8 6 4.1002 0.2755 0.9699 9 8 4.3352 -0.1380 -0.1458 10 7 4.7851 -0.2070 2.0256 11 6 4.4445 0.2098 3.3926 12 6 4.2029 -1.0479 4.2411 13 6 5.4277 -1.9610 4.1494 14 1 6.3089 -1.4225 4.4981 15 7 5.2172 -3.1454 4.9857 16 6 5.5117 -3.1010 6.3222 17 1 5.8996 -2.1930 6.7599 18 6 5.3128 -4.2233 7.1144 19 7 4.8405 -5.3301 6.5810 20 14 5.7153 -4.1631 8.9375 21 1 6.2284 -2.8140 9.2868 22 1 4.4883 -4.4456 9.7250 23 1 6.7495 -5.1818 9.2501 24 6 5.6363 -2.3933 2.6963 25 6 5.8904 -1.1551 1.8309 26 1 6.8293 -0.6879 2.1282 27 6 5.9617 -1.5644 0.3583 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3591 2.1313 0.0969 32 1 2.6154 1.4060 -0.9345 33 1 2.5034 1.1266 2.1013 34 1 4.4645 2.6959 2.0414 35 1 4.1675 2.9462 0.3043 36 1 1.7832 3.8424 0.9679 37 1 2.0743 5.2712 2.8616 38 1 3.6997 4.4294 3.2470 39 1 5.2678 0.7860 3.8148 40 1 3.5409 0.8191 3.3745 41 1 3.3257 -1.5776 3.8693 42 1 4.0409 -0.7596 5.2797 43 1 4.8691 -3.9609 4.5925 44 1 4.7011 -6.1143 7.1346 45 1 4.7456 -2.9102 2.3391 46 1 6.4947 -3.0622 2.6354 47 1 6.2038 -0.6929 -0.2498 48 1 6.7333 -2.3234 0.2291 49 1 4.9987 -1.9687 0.0466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754596607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:12 Heat of formation + Delta-G solvation = 16.771305 kcal Electronic energy + Delta-G solvation = -26363.101717 eV Core-core repulsion = 22905.542580 eV Total energy + Delta-G solvation = -3457.559138 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.66943 -37.81897 -36.48297 -34.62323 -34.25708 -32.80299 -31.91852 -30.87020 -29.21192 -26.99905 -26.46744 -24.53774 -23.78568 -22.92581 -21.29997 -20.21481 -20.10174 -19.51934 -18.61569 -17.21097 -16.93502 -15.94588 -15.88926 -15.12624 -14.84270 -14.82048 -14.40043 -13.91117 -13.84271 -13.67707 -13.34934 -13.25819 -12.98218 -12.94832 -12.56769 -12.40559 -12.10281 -12.01941 -11.67166 -11.56660 -11.44812 -11.24760 -11.09645 -10.93315 -10.90061 -10.79441 -10.73906 -10.42319 -10.21888 -9.83463 -9.72579 -9.63197 -9.37756 -8.93289 -8.82157 -8.36610 -6.99554 -5.79454 -3.08726 1.99925 2.23816 2.74607 3.10275 3.40705 3.46187 3.48643 4.35263 4.55256 4.64761 4.66949 4.86478 4.93210 4.97324 5.14167 5.18270 5.22092 5.30393 5.32959 5.37199 5.46950 5.50565 5.56654 5.58502 5.61775 5.66541 5.79349 5.84337 5.91892 5.94262 5.98685 6.03198 6.15095 6.26737 6.36422 6.38088 6.46068 6.49060 6.50162 6.54915 6.60813 6.72135 6.77053 6.91547 7.04674 7.59399 7.66851 8.33360 8.38695 9.50029 10.07672 10.42378 11.43163 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.003533 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.211900 B = 7923.723360 C = 8357.897752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.077 4.077 4 C -0.104 4.104 5 C -0.083 4.083 6 C -0.153 4.153 7 C -0.191 4.191 8 C 0.520 3.480 9 O -0.537 6.537 10 N -0.601 5.601 11 C 0.104 3.896 12 C -0.150 4.150 13 C 0.179 3.821 14 H 0.047 0.953 15 N -0.724 5.724 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.134 4.134 25 C 0.146 3.854 26 H 0.069 0.931 27 C -0.132 4.132 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.040 0.960 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 17.406 -12.453 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.162 4.162 3 C -0.114 4.114 4 C -0.125 4.125 5 C -0.120 4.120 6 C -0.171 4.171 7 C -0.227 4.227 8 C 0.308 3.692 9 O -0.416 6.416 10 N -0.334 5.334 11 C -0.019 4.019 12 C -0.191 4.191 13 C 0.069 3.931 14 H 0.065 0.935 15 N -0.364 5.364 16 C -0.371 4.371 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.173 4.173 25 C 0.043 3.957 26 H 0.087 0.913 27 C -0.189 4.189 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.099 17.196 -12.842 21.850 hybrid contribution -0.068 -0.397 1.215 1.280 sum -4.167 16.799 -11.627 20.851 Atomic orbital electron populations 1.23797 0.95863 1.01594 1.02576 1.23001 0.95844 0.98846 0.98506 1.20673 0.97022 0.95511 0.98177 1.21401 0.95842 0.94051 1.01179 1.20672 0.96849 0.91437 1.03053 1.22913 0.99206 0.96610 0.98350 1.23895 1.01652 0.99455 0.97744 1.20463 0.81944 0.82416 0.84418 1.90727 1.66686 1.59706 1.24439 1.48229 1.33936 1.44629 1.06610 1.22018 1.00612 0.97939 0.81329 1.22747 1.01586 0.95408 0.99397 1.20161 0.94546 0.89269 0.89136 0.93530 1.42441 1.77843 1.10122 1.06025 1.19275 1.35785 0.97172 0.84828 0.91131 1.24746 1.02030 0.95997 0.98120 1.69672 1.51308 1.02186 1.34843 0.86146 0.77514 0.77224 0.85469 1.20553 1.21884 1.21875 1.22290 1.02500 0.96589 0.95962 1.21313 0.88336 0.89246 0.96806 0.91326 1.22182 1.01970 1.01151 0.93627 0.88844 0.88640 0.87289 0.90886 0.89739 0.88603 0.90788 0.90278 0.87141 0.88458 0.88438 0.91564 0.90227 0.92185 0.90713 0.78273 0.93541 0.91853 0.90744 0.91452 0.94080 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.03 14.32 29.01 0.42 -1.61 16 2 C -0.14 -1.64 8.94 -36.02 -0.32 -1.96 16 3 C -0.08 -0.77 4.72 -27.88 -0.13 -0.90 16 4 C -0.10 -1.07 1.35 -91.77 -0.12 -1.19 16 5 C -0.08 -0.72 5.09 -27.88 -0.14 -0.87 16 6 C -0.15 -1.18 9.03 -36.03 -0.33 -1.51 16 7 C -0.19 -1.40 14.32 29.01 0.42 -0.99 16 8 C 0.52 6.88 6.13 -10.99 -0.07 6.81 16 9 O -0.54 -8.30 10.90 5.56 0.06 -8.24 16 10 N -0.60 -8.09 2.97 -164.96 -0.49 -8.58 16 11 C 0.10 1.32 6.02 -3.49 -0.02 1.30 16 12 C -0.15 -2.48 5.67 -26.39 -0.15 -2.63 16 13 C 0.18 3.40 2.73 -67.88 -0.19 3.22 16 14 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 15 N -0.72 -17.72 5.12 -53.38 -0.27 -17.99 16 16 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 17 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 20 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C -0.13 -2.24 4.84 -26.61 -0.13 -2.37 16 25 C 0.15 2.10 3.49 -67.60 -0.24 1.86 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 C -0.13 -1.89 7.59 37.16 0.28 -1.61 16 28 H 0.09 0.80 7.84 -52.49 -0.41 0.39 16 29 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.11 1.46 7.56 -52.49 -0.40 1.06 16 31 H 0.07 0.60 6.17 -51.93 -0.32 0.28 16 32 H 0.08 0.92 7.67 -51.93 -0.40 0.52 16 33 H 0.10 0.99 6.19 -51.93 -0.32 0.67 16 34 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.11 0.76 6.85 -52.48 -0.36 0.40 16 37 H 0.10 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.10 0.70 7.84 -52.49 -0.41 0.29 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.86 5.42 -51.93 -0.28 0.58 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.07 0.99 6.75 -51.93 -0.35 0.64 16 48 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 1.11 6.75 -51.93 -0.35 0.76 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -30.05 382.37 -8.71 -38.75 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -8.50 Total: 10.00 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.96 Total: -9.54 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.04 Total: -53.76 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.06 Total: -8.24 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.05 -8.71 -38.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754596607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.523 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds