Wall clock time and date at job start Tue Mar 31 2020 08:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47083 * 2 1 4 4 C 1.50694 * 109.47290 * 240.00145 * 2 1 3 5 5 O 1.21285 * 120.00076 * 239.99865 * 4 2 1 6 6 N 1.34774 * 120.00303 * 59.99533 * 4 2 1 7 7 C 1.46499 * 120.00268 * 180.02562 * 6 4 2 8 8 H 1.09003 * 110.56266 * 32.10047 * 7 6 4 9 9 C 1.54859 * 110.62679 * 269.02776 * 7 6 4 10 10 C 1.55838 * 103.44583 * 241.50917 * 9 7 6 11 11 H 1.09008 * 116.12953 * 159.14863 * 10 9 7 12 12 C 1.55846 * 105.06656 * 288.17446 * 10 9 7 13 13 C 1.54853 * 103.58572 * 71.74551 * 12 10 9 14 14 C 1.55843 * 110.62921 * 155.00443 * 7 6 4 15 15 H 1.08999 * 115.55949 * 319.67742 * 14 7 6 16 16 N 1.50239 * 101.05221 * 32.94002 * 10 9 7 17 17 C 1.36936 * 130.84246 * 126.05361 * 16 10 9 18 18 H 1.07997 * 120.00155 * 179.97438 * 17 16 10 19 19 C 1.38808 * 119.99686 * 359.97318 * 17 16 10 20 20 N 1.31623 * 120.00134 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00196 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46835 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47211 * 119.99564 * 21 19 17 24 24 H 1.48499 * 109.47426 * 240.00291 * 21 19 17 25 25 C 1.53000 * 109.47332 * 119.99719 * 2 1 3 26 26 C 1.54262 * 110.03215 * 297.17174 * 25 2 1 27 27 C 1.54895 * 104.19710 * 217.10225 * 26 25 2 28 28 C 1.54895 * 102.74340 * 37.94201 * 27 26 25 29 29 C 1.53872 * 110.03486 * 180.02562 * 25 2 1 30 30 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47535 * 299.99869 * 1 2 3 32 32 H 1.09003 * 109.47309 * 60.00286 * 1 2 3 33 33 H 0.97003 * 119.99701 * 0.02562 * 6 4 2 34 34 H 1.09005 * 110.62716 * 123.01732 * 9 7 6 35 35 H 1.08998 * 110.62668 * 0.02562 * 9 7 6 36 36 H 1.09002 * 110.62915 * 190.31567 * 12 10 9 37 37 H 1.08994 * 110.62469 * 313.17551 * 12 10 9 38 38 H 1.08998 * 110.62783 * 118.56957 * 13 12 10 39 39 H 1.08998 * 110.62556 * 241.59208 * 13 12 10 40 40 H 0.97003 * 120.00038 * 179.97438 * 20 19 17 41 41 H 1.08999 * 110.01167 * 58.60821 * 25 2 1 42 42 H 1.09003 * 110.48611 * 335.77922 * 26 25 2 43 43 H 1.08997 * 110.48968 * 98.42294 * 26 25 2 44 44 H 1.09000 * 110.75390 * 279.62915 * 27 26 25 45 45 H 1.08998 * 110.75479 * 156.25215 * 27 26 25 46 46 H 1.09003 * 110.48396 * 203.38168 * 28 27 26 47 47 H 1.08996 * 110.59846 * 80.79747 * 28 27 26 48 48 H 1.09003 * 110.03167 * 238.57449 * 29 25 2 49 49 H 1.08998 * 110.03338 * 359.94785 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2500 -2.4545 7 6 2.1946 -0.9409 -3.6507 8 1 2.2866 -2.0108 -3.4640 9 6 3.5482 -0.3455 -4.1106 10 6 3.2381 0.1999 -5.5371 11 1 3.9192 0.9606 -5.9188 12 6 3.0780 -1.0677 -6.4295 13 6 1.7258 -1.6671 -5.9707 14 6 1.2512 -0.6741 -4.8621 15 1 0.1846 -0.6795 -4.6376 16 7 1.8054 0.6234 -5.3785 17 6 1.1931 1.8225 -5.6282 18 1 0.1341 1.9357 -5.4491 19 6 1.9336 2.8924 -6.1116 20 7 3.2241 2.7543 -6.3303 21 14 1.0986 4.5285 -6.4516 22 1 -0.3464 4.4239 -6.1253 23 1 1.7196 5.5849 -5.6130 24 1 1.2586 4.8772 -7.8862 25 6 2.0400 -0.7212 1.2493 26 6 1.5922 0.0361 2.5164 27 6 2.7934 -0.1001 3.4848 28 6 4.0122 0.0244 2.5370 29 6 3.5786 -0.7282 1.2626 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.1493 0.5389 -2.5435 34 1 4.3137 -1.1203 -4.1537 35 1 3.8566 0.4635 -3.4484 36 1 3.0383 -0.7928 -7.4835 37 1 3.8910 -1.7705 -6.2476 38 1 1.0156 -1.6894 -6.7972 39 1 1.8687 -2.6660 -5.5587 40 1 3.7415 3.5019 -6.6684 41 1 1.6614 -1.7431 1.2708 42 1 1.4038 1.0850 2.2874 43 1 0.7032 -0.4276 2.9438 44 1 2.7845 -1.0726 3.9769 45 1 2.7911 0.7057 4.2188 46 1 4.8893 -0.4480 2.9794 47 1 4.2169 1.0708 2.3109 48 1 3.9471 -1.7536 1.2912 49 1 3.9621 -0.2186 0.3787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098190708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:56 Heat of formation + Delta-G solvation = -19.957194 kcal Electronic energy + Delta-G solvation = -26731.232239 eV Core-core repulsion = 23272.080434 eV Total energy + Delta-G solvation = -3459.151805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.12301 -38.94817 -37.43646 -33.82990 -33.15089 -32.45046 -29.12570 -28.84087 -28.73723 -27.93572 -27.26030 -24.34564 -23.84394 -21.37055 -20.62763 -19.96994 -19.79303 -19.25008 -18.57018 -16.99738 -16.70498 -15.98212 -15.59219 -14.99736 -14.85075 -14.51288 -14.11344 -13.92267 -13.50519 -13.33634 -13.12559 -12.84899 -12.63535 -12.22918 -12.02631 -11.83231 -11.51692 -11.23567 -11.11752 -11.09428 -11.02413 -10.96888 -10.94089 -10.91270 -10.69830 -10.58361 -10.48788 -10.34656 -10.25670 -10.09316 -9.90079 -9.53316 -9.21059 -9.05963 -8.96043 -8.37178 -6.95701 -5.76157 -3.15228 3.08576 3.34387 3.39571 3.42468 3.68989 4.39093 4.55393 4.60588 4.69093 5.07670 5.08637 5.13287 5.17270 5.34466 5.45380 5.49272 5.59234 5.61750 5.64929 5.66980 5.71120 5.74211 5.79569 5.80477 5.87347 5.92591 6.02254 6.06523 6.09677 6.14073 6.16474 6.18157 6.30385 6.32832 6.43232 6.46652 6.50387 6.52162 6.62521 6.76797 6.83566 6.96463 7.17293 7.34242 7.46394 7.78369 8.09496 8.16423 8.72999 9.05679 9.68963 10.50490 11.32840 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.015472 B = 0.004069 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.244297 B = 6879.861686 C = 7689.093021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 H 0.094 0.906 4 C 0.512 3.488 5 O -0.550 6.550 6 N -0.706 5.706 7 C 0.129 3.871 8 H 0.078 0.922 9 C -0.141 4.141 10 C 0.153 3.847 11 H 0.153 0.847 12 C -0.139 4.139 13 C -0.128 4.128 14 C 0.125 3.875 15 H 0.086 0.914 16 N -0.591 5.591 17 C -0.214 4.214 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.919 5.919 21 Si 0.914 3.086 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.068 4.068 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.129 4.129 29 C -0.107 4.107 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.401 0.599 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.253 0.747 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.881 -5.915 13.844 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.112 0.888 4 C 0.298 3.702 5 O -0.429 6.429 6 N -0.356 5.356 7 C 0.022 3.978 8 H 0.096 0.904 9 C -0.182 4.182 10 C 0.047 3.953 11 H 0.169 0.831 12 C -0.178 4.178 13 C -0.168 4.168 14 C 0.016 3.984 15 H 0.104 0.896 16 N -0.312 5.312 17 C -0.342 4.342 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.567 5.567 21 Si 0.745 3.255 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.087 4.087 26 C -0.157 4.157 27 C -0.162 4.162 28 C -0.167 4.167 29 C -0.145 4.145 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.236 0.764 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.407 -6.288 13.793 15.348 hybrid contribution -0.657 1.224 -0.357 1.434 sum -3.063 -5.064 13.436 14.682 Atomic orbital electron populations 1.21783 0.93279 1.02470 1.02575 1.21477 0.97223 1.00750 0.93361 0.88800 1.20530 0.80241 0.84665 0.84733 1.90646 1.38452 1.26871 1.86912 1.46048 1.52658 1.31547 1.05304 1.22589 0.95696 0.95274 0.84192 0.90393 1.23426 0.95097 0.99022 1.00628 1.23757 0.88297 0.93064 0.90200 0.83056 1.23065 0.95374 0.98814 1.00590 1.22934 0.98122 0.97054 0.98670 1.23232 0.95361 0.88100 0.91657 0.89561 1.46540 1.04499 1.06162 1.73986 1.19042 0.92597 0.86037 1.36476 0.90388 1.24697 0.95746 0.98148 1.01995 1.69476 1.05442 1.30474 1.51287 0.86007 0.78234 0.83635 0.77634 1.20611 1.21846 1.21816 1.21537 0.95890 0.99130 0.92128 1.22468 0.97746 1.00428 0.95107 1.22482 0.95074 1.01263 0.97370 1.22428 0.97587 1.00493 0.96170 1.22072 0.94580 1.00736 0.97089 0.92296 0.91636 0.91972 0.76409 0.92970 0.92337 0.92693 0.93383 0.92511 0.93015 0.93604 0.90682 0.91446 0.91822 0.91714 0.91935 0.92095 0.91923 0.91652 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.89 37.16 0.33 -1.19 16 2 C -0.11 -1.35 2.02 -91.78 -0.19 -1.54 16 3 H 0.09 1.16 8.12 -51.93 -0.42 0.74 16 4 C 0.51 8.39 6.54 -10.99 -0.07 8.32 16 5 O -0.55 -10.57 14.31 5.55 0.08 -10.49 16 6 N -0.71 -12.06 4.97 -51.40 -0.26 -12.32 16 7 C 0.13 2.41 2.80 -65.43 -0.18 2.23 16 8 H 0.08 1.48 7.23 -51.93 -0.38 1.11 16 9 C -0.14 -2.91 6.23 -24.24 -0.15 -3.06 16 10 C 0.15 3.49 4.72 -62.80 -0.30 3.19 16 11 H 0.15 3.96 5.52 -51.92 -0.29 3.67 16 12 C -0.14 -2.76 6.43 -24.23 -0.16 -2.92 16 13 C -0.13 -2.33 6.47 -24.03 -0.16 -2.49 16 14 C 0.13 2.43 5.07 -62.59 -0.32 2.11 16 15 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 16 N -0.59 -13.89 2.99 -145.59 -0.43 -14.33 16 17 C -0.21 -5.52 10.59 -15.06 -0.16 -5.68 16 18 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.92 -25.60 10.46 55.49 0.58 -25.02 16 21 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 C -0.07 -0.81 2.12 -89.51 -0.19 -1.00 16 26 C -0.12 -1.15 5.32 -25.07 -0.13 -1.28 16 27 C -0.12 -1.15 6.91 -24.73 -0.17 -1.32 16 28 C -0.13 -1.37 6.83 -25.10 -0.17 -1.54 16 29 C -0.11 -1.39 5.08 -25.64 -0.13 -1.52 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.58 7.27 -51.93 -0.38 0.20 16 32 H 0.06 0.66 7.56 -51.93 -0.39 0.27 16 33 H 0.40 6.71 8.08 -40.82 -0.33 6.38 16 34 H 0.05 1.01 7.82 -51.93 -0.41 0.61 16 35 H 0.06 1.30 7.98 -51.93 -0.41 0.89 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 42 H 0.07 0.62 7.75 -51.93 -0.40 0.22 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.06 0.96 6.91 -51.93 -0.36 0.60 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -28.63 370.66 -10.48 -39.11 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -8.77 Total: 9.30 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -2.24 Total: -8.04 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.11 Total: -51.66 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.63 -10.48 -39.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098190708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.152 kcal (2) G-P(sol) polarization free energy of solvation -28.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds