Wall clock time and date at job start Tue Mar 31 2020 09:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 120.00279 * 2 1 4 4 H 1.07998 * 120.00156 * 185.43893 * 3 2 1 5 5 C 1.38808 * 119.99657 * 5.44292 * 3 2 1 6 6 N 1.31623 * 119.99996 * 5.54782 * 5 3 2 7 7 Si 1.86802 * 119.99905 * 185.54987 * 5 3 2 8 8 H 1.48500 * 109.47187 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47013 * 120.00267 * 7 5 3 10 10 H 1.48502 * 109.47171 * 239.99657 * 7 5 3 11 11 C 1.46508 * 120.00195 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47236 * 94.12919 * 11 2 1 13 13 H 1.09000 * 109.58592 * 298.40444 * 12 11 2 14 14 C 1.53191 * 109.58509 * 58.68770 * 12 11 2 15 15 C 1.53043 * 109.31200 * 174.56542 * 14 12 11 16 16 C 1.53038 * 109.53686 * 298.63452 * 15 14 12 17 17 C 1.53199 * 109.31235 * 61.36670 * 16 15 14 18 18 N 1.46924 * 109.70256 * 178.04933 * 12 11 2 19 19 C 1.34775 * 120.63176 * 6.51139 * 18 12 11 20 20 O 1.21286 * 120.00108 * 5.77968 * 19 18 12 21 21 C 1.50700 * 120.00184 * 185.77986 * 19 18 12 22 22 C 1.52994 * 109.47150 * 180.02562 * 21 19 18 23 23 H 1.08994 * 110.34731 * 54.30238 * 22 21 19 24 24 C 1.51105 * 110.38551 * 292.00943 * 22 21 19 25 25 C 1.30722 * 110.98851 * 224.84247 * 24 22 21 26 26 C 1.51105 * 111.14127 * 359.84238 * 25 24 22 27 27 C 1.54638 * 104.72440 * 16.53678 * 26 25 24 28 28 H 1.08996 * 109.47212 * 174.76649 * 1 2 3 29 29 H 1.09005 * 109.46537 * 294.76457 * 1 2 3 30 30 H 1.08995 * 109.47225 * 54.76237 * 1 2 3 31 31 H 0.97008 * 119.99928 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.46430 * 334.12860 * 11 2 1 33 33 H 1.08998 * 109.47287 * 214.13207 * 11 2 1 34 34 H 1.08995 * 109.49947 * 54.61599 * 14 12 11 35 35 H 1.09006 * 109.49543 * 294.51178 * 14 12 11 36 36 H 1.09002 * 109.46304 * 178.61160 * 15 14 12 37 37 H 1.09003 * 109.45016 * 58.64558 * 15 14 12 38 38 H 1.09003 * 109.49982 * 181.31432 * 16 15 14 39 39 H 1.08997 * 109.49896 * 301.41288 * 16 15 14 40 40 H 1.08993 * 109.58604 * 65.14962 * 17 16 15 41 41 H 1.09003 * 109.58467 * 185.57686 * 17 16 15 42 42 H 1.09000 * 109.47003 * 300.00154 * 21 19 18 43 43 H 1.09005 * 109.46806 * 59.99839 * 21 19 18 44 44 H 1.07992 * 124.44917 * 44.73068 * 24 22 21 45 45 H 1.08002 * 124.41505 * 179.97438 * 25 24 22 46 46 H 1.09002 * 110.38663 * 257.72652 * 26 25 24 47 47 H 1.08996 * 110.38860 * 135.34938 * 26 25 24 48 48 H 1.08998 * 111.03636 * 217.33460 * 27 26 25 49 49 H 1.08998 * 111.03423 * 93.39911 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2261 1.1880 -0.0886 5 6 1.4604 2.3853 0.1140 6 7 0.1623 2.3802 0.3316 7 14 2.3750 4.0067 -0.0414 8 1 3.8161 3.7410 -0.2820 9 1 1.8175 4.7825 -1.1783 10 1 2.2184 4.7855 1.2133 11 6 2.1975 -1.2688 -0.0006 12 6 2.5425 -1.6579 -1.4395 13 1 1.6245 -1.7965 -2.0106 14 6 3.3854 -0.5520 -2.0825 15 6 3.8405 -1.0054 -3.4715 16 6 4.7075 -2.2599 -3.3418 17 6 3.8796 -3.3852 -2.7131 18 7 3.3179 -2.9059 -1.4428 19 6 3.5105 -3.5977 -0.3023 20 8 2.9563 -3.2499 0.7189 21 6 4.4146 -4.8033 -0.2959 22 6 4.4585 -5.4003 1.1121 23 1 3.4494 -5.6104 1.4663 24 6 5.1644 -4.4597 2.0609 25 6 6.0103 -5.1068 2.8188 26 6 6.0049 -6.5845 2.5031 27 6 5.3128 -6.6893 1.1242 28 1 -0.3633 -1.0233 -0.0937 29 1 -0.3632 0.4305 0.9332 30 1 -0.3633 0.5929 -0.8393 31 1 -0.3196 3.2184 0.4109 32 1 1.5784 -2.0459 0.4475 33 1 3.1159 -1.1584 0.5761 34 1 4.2581 -0.3519 -1.4610 35 1 2.7873 0.3547 -2.1737 36 1 4.4199 -0.2106 -3.9413 37 1 2.9674 -1.2293 -4.0845 38 1 5.0506 -2.5688 -4.3292 39 1 5.5678 -2.0437 -2.7084 40 1 3.0707 -3.6646 -3.3880 41 1 4.5182 -4.2488 -2.5274 42 1 4.0323 -5.5479 -0.9941 43 1 5.4193 -4.5056 -0.5962 44 1 4.9934 -3.3943 2.1048 45 1 6.6302 -4.6457 3.5735 46 1 5.4369 -7.1315 3.2556 47 1 7.0250 -6.9643 2.4458 48 1 4.6826 -7.5769 1.0692 49 1 6.0453 -6.6809 0.3171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157504165.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:17 Heat of formation + Delta-G solvation = 18.364639 kcal Electronic energy + Delta-G solvation = -26827.385996 eV Core-core repulsion = 23369.895950 eV Total energy + Delta-G solvation = -3457.490046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.36821 -38.65538 -36.92015 -35.46139 -32.73321 -32.19909 -31.06182 -29.90727 -28.94907 -26.60199 -25.86134 -25.24103 -24.12221 -22.28517 -20.85746 -20.49688 -20.15179 -18.88381 -18.37440 -16.81737 -16.37093 -15.99932 -15.71982 -15.12412 -14.93982 -14.54603 -14.20970 -13.88432 -13.64594 -13.34483 -13.14954 -13.03862 -12.58585 -12.38093 -12.17033 -11.99104 -11.87984 -11.83503 -11.50099 -11.33016 -11.14918 -11.06685 -10.95398 -10.78362 -10.72907 -10.64451 -10.52826 -10.32211 -10.17456 -9.99321 -9.77564 -9.56418 -8.86343 -8.69570 -8.39869 -8.12815 -6.72326 -5.51214 -2.93408 2.34069 2.96211 3.29367 3.43895 3.50164 3.51978 4.47550 4.55604 4.60547 4.74095 4.87043 4.90215 5.01997 5.17734 5.18849 5.30802 5.39447 5.46169 5.48634 5.55599 5.57065 5.61311 5.64719 5.69996 5.79401 5.81738 5.86602 5.98158 6.01087 6.08416 6.14174 6.20600 6.22604 6.27086 6.54674 6.59538 6.64431 6.80357 6.93452 6.94633 7.02939 7.12141 7.38747 7.74297 7.81567 7.85317 8.07172 8.49415 8.61220 9.40828 10.06569 10.50229 11.47886 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.004147 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.114232 B = 6750.799094 C = 7545.779293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.612 5.612 3 C -0.234 4.234 4 H 0.073 0.927 5 C -0.010 4.010 6 N -0.919 5.919 7 Si 0.901 3.099 8 H -0.281 1.281 9 H -0.292 1.292 10 H -0.292 1.292 11 C 0.165 3.835 12 C 0.123 3.877 13 H 0.059 0.941 14 C -0.121 4.121 15 C -0.122 4.122 16 C -0.133 4.133 17 C 0.108 3.892 18 N -0.608 5.608 19 C 0.508 3.492 20 O -0.522 6.522 21 C -0.132 4.132 22 C -0.054 4.054 23 H 0.090 0.910 24 C -0.133 4.133 25 C -0.191 4.191 26 C -0.097 4.097 27 C -0.122 4.122 28 H -0.011 1.011 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.247 0.753 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.128 0.872 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.185 -18.159 -5.318 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.336 5.336 3 C -0.363 4.363 4 H 0.091 0.909 5 C -0.205 4.205 6 N -0.567 5.567 7 Si 0.733 3.267 8 H -0.206 1.206 9 H -0.219 1.219 10 H -0.219 1.219 11 C 0.038 3.962 12 C 0.019 3.981 13 H 0.077 0.923 14 C -0.159 4.159 15 C -0.160 4.160 16 C -0.172 4.172 17 C -0.016 4.016 18 N -0.343 5.343 19 C 0.296 3.704 20 O -0.398 6.398 21 C -0.172 4.172 22 C -0.073 4.073 23 H 0.108 0.892 24 C -0.151 4.151 25 C -0.209 4.209 26 C -0.134 4.134 27 C -0.160 4.160 28 H 0.008 0.992 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.146 0.854 45 H 0.138 0.862 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.757 -17.824 -4.732 21.349 hybrid contribution 0.535 1.127 -0.364 1.300 sum 11.292 -16.697 -5.096 20.791 Atomic orbital electron populations 1.20985 0.82057 0.92743 1.01628 1.44339 1.02365 1.01090 1.85853 1.19371 0.91153 0.83827 1.41968 0.90876 1.24844 0.95860 0.97644 1.02183 1.70222 1.06312 1.24239 1.55976 0.86199 0.78739 0.84553 0.77256 1.20612 1.21886 1.21931 1.21355 0.96985 0.87577 0.90321 1.22469 0.92065 0.81027 1.02586 0.92320 1.21977 1.00157 0.99795 0.93938 1.21588 0.99081 0.96630 0.98672 1.21912 0.98738 0.96175 1.00342 1.21681 0.97252 0.96737 0.85914 1.48434 1.53566 1.25050 1.07221 1.20586 0.82069 0.84436 0.83325 1.90775 1.48419 1.67980 1.32672 1.21768 1.00286 0.96488 0.98673 1.20829 1.00178 0.93230 0.93013 0.89166 1.23428 0.95404 0.99820 0.96437 1.23263 1.00879 0.95520 1.01218 1.21306 1.00447 0.94856 0.96780 1.22557 0.98703 0.97283 0.97417 0.99232 0.93556 0.94848 0.94228 0.91156 0.93564 0.92566 0.88325 0.92274 0.92345 0.91510 0.91761 0.91758 0.90362 0.89376 0.89238 0.85391 0.86212 0.91068 0.91627 0.91019 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.50 8.98 59.85 0.54 5.04 16 2 N -0.61 -16.06 2.79 -181.12 -0.51 -16.56 16 3 C -0.23 -6.48 7.70 -15.06 -0.12 -6.60 16 4 H 0.07 1.99 7.13 -52.49 -0.37 1.61 16 5 C -0.01 -0.28 5.42 -17.43 -0.09 -0.37 16 6 N -0.92 -27.42 9.54 55.49 0.53 -26.89 16 7 Si 0.90 22.41 29.56 -169.99 -5.02 17.38 16 8 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 11 C 0.17 3.74 3.68 -4.04 -0.01 3.72 16 12 C 0.12 2.30 3.21 -67.60 -0.22 2.08 16 13 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.12 -2.18 4.15 -26.61 -0.11 -2.29 16 15 C -0.12 -1.68 5.88 -26.69 -0.16 -1.84 16 16 C -0.13 -1.47 6.08 -26.61 -0.16 -1.63 16 17 C 0.11 1.18 6.35 -3.71 -0.02 1.15 16 18 N -0.61 -9.09 2.97 -165.22 -0.49 -9.58 16 19 C 0.51 7.74 7.31 -10.99 -0.08 7.66 16 20 O -0.52 -9.97 10.37 5.55 0.06 -9.91 16 21 C -0.13 -1.42 3.46 -27.89 -0.10 -1.52 16 22 C -0.05 -0.61 2.52 -90.71 -0.23 -0.84 16 23 H 0.09 1.16 7.96 -51.93 -0.41 0.75 16 24 C -0.13 -1.72 9.24 -35.75 -0.33 -2.05 16 25 C -0.19 -2.12 10.78 -35.75 -0.39 -2.51 16 26 C -0.10 -0.88 6.81 -26.82 -0.18 -1.06 16 27 C -0.12 -1.05 6.71 -25.01 -0.17 -1.22 16 28 H -0.01 -0.26 7.79 -51.93 -0.40 -0.67 16 29 H 0.05 1.34 6.88 -51.93 -0.36 0.98 16 30 H 0.03 0.93 7.24 -51.93 -0.38 0.55 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.07 1.67 5.99 -51.93 -0.31 1.36 16 33 H 0.05 1.12 7.17 -51.93 -0.37 0.75 16 34 H 0.06 1.07 7.96 -51.93 -0.41 0.66 16 35 H 0.10 2.12 6.50 -51.93 -0.34 1.78 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.65 5.93 -51.93 -0.31 0.34 16 42 H 0.09 0.75 7.71 -51.93 -0.40 0.35 16 43 H 0.09 0.87 7.92 -51.93 -0.41 0.46 16 44 H 0.13 1.96 7.44 -52.49 -0.39 1.56 16 45 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.54 7.91 -51.93 -0.41 0.13 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -31.35 366.01 -10.39 -41.74 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.64 Total: 0.59 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -1.83 Total: -2.29 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.47 Total: -53.03 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.06 Total: -9.91 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.35 -10.39 -41.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157504165.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.107 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds