Wall clock time and date at job start Tue Mar 31 2020 09:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 120.00279 * 2 1 4 4 H 1.07998 * 120.00156 * 185.43893 * 3 2 1 5 5 C 1.38808 * 119.99657 * 5.44292 * 3 2 1 6 6 N 1.31623 * 119.99996 * 5.54782 * 5 3 2 7 7 Si 1.86802 * 119.99905 * 185.54987 * 5 3 2 8 8 H 1.48500 * 109.47187 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47013 * 120.00267 * 7 5 3 10 10 H 1.48502 * 109.47171 * 239.99657 * 7 5 3 11 11 C 1.46508 * 120.00195 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47236 * 94.12919 * 11 2 1 13 13 H 1.09000 * 109.58592 * 298.40444 * 12 11 2 14 14 C 1.53191 * 109.58509 * 58.68770 * 12 11 2 15 15 C 1.53043 * 109.31200 * 174.56542 * 14 12 11 16 16 C 1.53038 * 109.53686 * 298.63452 * 15 14 12 17 17 C 1.53199 * 109.31235 * 61.36670 * 16 15 14 18 18 N 1.46924 * 109.70256 * 178.04933 * 12 11 2 19 19 C 1.34775 * 120.63176 * 6.51139 * 18 12 11 20 20 O 1.21286 * 120.00108 * 5.77968 * 19 18 12 21 21 C 1.50700 * 120.00184 * 185.77986 * 19 18 12 22 22 C 1.52994 * 109.47150 * 180.02562 * 21 19 18 23 23 H 1.08994 * 110.34731 * 54.30238 * 22 21 19 24 24 C 1.51105 * 110.38551 * 292.00943 * 22 21 19 25 25 C 1.30722 * 110.98851 * 224.84247 * 24 22 21 26 26 C 1.51105 * 111.14127 * 359.84238 * 25 24 22 27 27 C 1.54638 * 104.72440 * 16.53678 * 26 25 24 28 28 H 1.08996 * 109.47212 * 174.76649 * 1 2 3 29 29 H 1.09005 * 109.46537 * 294.76457 * 1 2 3 30 30 H 1.08995 * 109.47225 * 54.76237 * 1 2 3 31 31 H 0.97008 * 119.99928 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.46430 * 334.12860 * 11 2 1 33 33 H 1.08998 * 109.47287 * 214.13207 * 11 2 1 34 34 H 1.08995 * 109.49947 * 54.61599 * 14 12 11 35 35 H 1.09006 * 109.49543 * 294.51178 * 14 12 11 36 36 H 1.09002 * 109.46304 * 178.61160 * 15 14 12 37 37 H 1.09003 * 109.45016 * 58.64558 * 15 14 12 38 38 H 1.09003 * 109.49982 * 181.31432 * 16 15 14 39 39 H 1.08997 * 109.49896 * 301.41288 * 16 15 14 40 40 H 1.08993 * 109.58604 * 65.14962 * 17 16 15 41 41 H 1.09003 * 109.58467 * 185.57686 * 17 16 15 42 42 H 1.09000 * 109.47003 * 300.00154 * 21 19 18 43 43 H 1.09005 * 109.46806 * 59.99839 * 21 19 18 44 44 H 1.07992 * 124.44917 * 44.73068 * 24 22 21 45 45 H 1.08002 * 124.41505 * 179.97438 * 25 24 22 46 46 H 1.09002 * 110.38663 * 257.72652 * 26 25 24 47 47 H 1.08996 * 110.38860 * 135.34938 * 26 25 24 48 48 H 1.08998 * 111.03636 * 217.33460 * 27 26 25 49 49 H 1.08998 * 111.03423 * 93.39911 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2261 1.1880 -0.0886 5 6 1.4604 2.3853 0.1140 6 7 0.1623 2.3802 0.3316 7 14 2.3750 4.0067 -0.0414 8 1 3.8161 3.7410 -0.2820 9 1 1.8175 4.7825 -1.1783 10 1 2.2184 4.7855 1.2133 11 6 2.1975 -1.2688 -0.0006 12 6 2.5425 -1.6579 -1.4395 13 1 1.6245 -1.7965 -2.0106 14 6 3.3854 -0.5520 -2.0825 15 6 3.8405 -1.0054 -3.4715 16 6 4.7075 -2.2599 -3.3418 17 6 3.8796 -3.3852 -2.7131 18 7 3.3179 -2.9059 -1.4428 19 6 3.5105 -3.5977 -0.3023 20 8 2.9563 -3.2499 0.7189 21 6 4.4146 -4.8033 -0.2959 22 6 4.4585 -5.4003 1.1121 23 1 3.4494 -5.6104 1.4663 24 6 5.1644 -4.4597 2.0609 25 6 6.0103 -5.1068 2.8188 26 6 6.0049 -6.5845 2.5031 27 6 5.3128 -6.6893 1.1242 28 1 -0.3633 -1.0233 -0.0937 29 1 -0.3632 0.4305 0.9332 30 1 -0.3633 0.5929 -0.8393 31 1 -0.3196 3.2184 0.4109 32 1 1.5784 -2.0459 0.4475 33 1 3.1159 -1.1584 0.5761 34 1 4.2581 -0.3519 -1.4610 35 1 2.7873 0.3547 -2.1737 36 1 4.4199 -0.2106 -3.9413 37 1 2.9674 -1.2293 -4.0845 38 1 5.0506 -2.5688 -4.3292 39 1 5.5678 -2.0437 -2.7084 40 1 3.0707 -3.6646 -3.3880 41 1 4.5182 -4.2488 -2.5274 42 1 4.0323 -5.5479 -0.9941 43 1 5.4193 -4.5056 -0.5962 44 1 4.9934 -3.3943 2.1048 45 1 6.6302 -4.6457 3.5735 46 1 5.4369 -7.1315 3.2556 47 1 7.0250 -6.9643 2.4458 48 1 4.6826 -7.5769 1.0692 49 1 6.0453 -6.6809 0.3171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157504165.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:16 Heat of formation + Delta-G solvation = 1.148322 kcal Electronic energy + Delta-G solvation = -26828.132551 eV Core-core repulsion = 23369.895950 eV Total energy + Delta-G solvation = -3458.236601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.58606 -39.60924 -38.17766 -37.34034 -34.10408 -33.69503 -32.36457 -31.43893 -29.73555 -28.03998 -28.02522 -26.51059 -25.26595 -23.89293 -22.22430 -21.81442 -21.18439 -20.01716 -19.39871 -18.76906 -17.69038 -17.23384 -16.86663 -16.58247 -16.12003 -15.90392 -15.40957 -15.30309 -15.07611 -14.78103 -14.59589 -14.39252 -14.13668 -13.84335 -13.44793 -13.23738 -12.92619 -12.85882 -12.73907 -12.69773 -12.64505 -12.58673 -12.19182 -12.09258 -12.02031 -11.98937 -11.90887 -11.82475 -11.70496 -11.62246 -11.50027 -11.27383 -10.65407 -10.07153 -9.74883 -9.42153 -8.87219 -7.71713 -5.16618 1.40755 1.43010 1.43939 1.54037 1.79172 2.11676 2.52366 3.33936 3.57640 3.75201 3.79414 3.91034 3.98041 4.01845 4.04104 4.11422 4.22158 4.40063 4.41323 4.47134 4.60309 4.61332 4.67199 4.70286 4.73519 4.79515 4.80729 4.88455 5.00778 5.04823 5.06289 5.08529 5.15038 5.17448 5.20308 5.31468 5.34549 5.38765 5.47916 5.51316 5.54158 5.59949 5.73163 5.80591 5.83273 6.00720 6.31280 6.64798 7.18974 7.38900 7.92781 8.32990 9.26956 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.004147 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.114232 B = 6750.799094 C = 7545.779293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.628 5.628 3 C -0.233 4.233 4 H 0.073 0.927 5 C -0.067 4.067 6 N -0.950 5.950 7 Si 0.967 3.033 8 H -0.268 1.268 9 H -0.289 1.289 10 H -0.295 1.295 11 C 0.178 3.822 12 C 0.136 3.864 13 H 0.051 0.949 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.127 4.127 17 C 0.102 3.898 18 N -0.609 5.609 19 C 0.497 3.503 20 O -0.572 6.572 21 C -0.119 4.119 22 C -0.054 4.054 23 H 0.066 0.934 24 C -0.168 4.168 25 C -0.178 4.178 26 C -0.098 4.098 27 C -0.111 4.111 28 H 0.011 0.989 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.243 0.757 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.123 0.877 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.923 -21.020 -7.578 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.353 5.353 3 C -0.363 4.363 4 H 0.091 0.909 5 C -0.259 4.259 6 N -0.600 5.600 7 Si 0.796 3.204 8 H -0.193 1.193 9 H -0.216 1.216 10 H -0.223 1.223 11 C 0.052 3.948 12 C 0.030 3.970 13 H 0.069 0.931 14 C -0.151 4.151 15 C -0.155 4.155 16 C -0.165 4.165 17 C -0.020 4.020 18 N -0.343 5.343 19 C 0.287 3.713 20 O -0.452 6.452 21 C -0.158 4.158 22 C -0.072 4.072 23 H 0.084 0.916 24 C -0.186 4.186 25 C -0.196 4.196 26 C -0.134 4.134 27 C -0.148 4.148 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.128 0.872 44 H 0.108 0.892 45 H 0.141 0.859 46 H 0.095 0.905 47 H 0.105 0.895 48 H 0.107 0.893 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.544 -20.738 -7.030 25.747 hybrid contribution -0.289 1.960 0.435 2.029 sum 13.255 -18.778 -6.595 23.912 Atomic orbital electron populations 1.20631 0.82436 0.93269 0.99173 1.44577 1.02432 1.02065 1.86232 1.19574 0.91254 0.84586 1.40891 0.90924 1.25622 0.96771 1.00860 1.02658 1.70420 1.07650 1.24586 1.57373 0.85169 0.78191 0.80234 0.76777 1.19260 1.21573 1.22286 1.21216 0.95110 0.85636 0.92845 1.21813 0.92749 0.83501 0.98888 0.93138 1.21775 0.98502 0.98051 0.96742 1.21551 1.00051 0.98595 0.95312 1.21901 0.97766 0.94420 1.02389 1.22068 0.98241 0.97856 0.83799 1.48473 1.53111 1.23509 1.09235 1.21544 0.81924 0.85373 0.82421 1.90754 1.50439 1.69490 1.34469 1.21789 1.00010 0.94708 0.99293 1.20819 0.99300 0.94328 0.92790 0.91571 1.23326 0.97600 0.98568 0.99102 1.23574 0.99210 0.97093 0.99749 1.21383 1.01900 0.92792 0.97372 1.22560 0.98663 0.95946 0.97651 0.97042 0.96571 0.96772 0.94754 0.92544 0.95967 0.94342 0.92345 0.91515 0.91768 0.87713 0.92170 0.90333 0.86464 0.85769 0.87159 0.89226 0.85890 0.90543 0.89545 0.89328 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.55 8.98 127.77 1.15 11.70 16 2 N -0.63 -34.68 2.79 -726.94 -2.03 -36.71 16 3 C -0.23 -13.51 7.70 84.03 0.65 -12.86 16 4 H 0.07 4.12 7.13 -2.91 -0.02 4.10 16 5 C -0.07 -3.94 5.42 84.86 0.46 -3.48 16 6 N -0.95 -59.05 9.54 21.65 0.21 -58.84 16 7 Si 0.97 47.40 29.56 68.60 2.03 49.43 16 8 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 11 C 0.18 8.50 3.68 86.38 0.32 8.82 16 12 C 0.14 5.19 3.21 44.97 0.14 5.33 16 13 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.11 -4.13 4.15 30.67 0.13 -4.01 16 15 C -0.12 -3.01 5.88 30.62 0.18 -2.83 16 16 C -0.13 -2.29 6.08 30.67 0.19 -2.10 16 17 C 0.10 1.80 6.35 86.36 0.55 2.35 16 18 N -0.61 -17.48 2.97 -795.02 -2.36 -19.84 16 19 C 0.50 14.92 7.31 87.66 0.64 15.56 16 20 O -0.57 -22.99 10.37 -3.05 -0.03 -23.02 16 21 C -0.12 -2.21 3.46 29.85 0.10 -2.10 16 22 C -0.05 -1.14 2.52 -10.85 -0.03 -1.17 16 23 H 0.07 1.70 7.96 -2.39 -0.02 1.68 16 24 C -0.17 -4.42 9.24 26.06 0.24 -4.18 16 25 C -0.18 -3.80 10.78 26.06 0.28 -3.52 16 26 C -0.10 -1.47 6.81 30.53 0.21 -1.26 16 27 C -0.11 -1.48 6.71 31.71 0.21 -1.27 16 28 H 0.01 0.56 7.79 -2.39 -0.02 0.54 16 29 H 0.02 0.98 6.88 -2.38 -0.02 0.96 16 30 H 0.01 0.81 7.24 -2.39 -0.02 0.80 16 31 H 0.24 14.64 8.31 -92.70 -0.77 13.87 16 32 H 0.06 2.85 5.99 -2.39 -0.01 2.83 16 33 H 0.02 1.15 7.17 -2.39 -0.02 1.13 16 34 H 0.04 1.51 7.96 -2.39 -0.02 1.49 16 35 H 0.06 2.61 6.50 -2.38 -0.02 2.59 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.12 1.22 5.93 -2.39 -0.01 1.21 16 42 H 0.12 1.46 7.71 -2.39 -0.02 1.44 16 43 H 0.11 1.67 7.92 -2.38 -0.02 1.65 16 44 H 0.09 3.01 7.44 -2.91 -0.02 2.99 16 45 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 46 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.09 0.89 7.91 -2.39 -0.02 0.87 16 Total: -1.00 -74.69 366.01 4.13 -70.56 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.90 Total: 13.44 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.42 Total: 4.98 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -4.19 Total: -115.39 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.03 Total: -23.02 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -74.69 4.13 -70.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157504165.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.706 kcal (2) G-P(sol) polarization free energy of solvation -74.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds