Wall clock time and date at job start Tue Mar 31 2020 09:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 120.00188 * 2 1 4 4 H 1.07998 * 119.99906 * 157.19169 * 3 2 1 5 5 C 1.38816 * 119.99656 * 337.18816 * 3 2 1 6 6 N 1.31615 * 120.00033 * 348.71418 * 5 3 2 7 7 Si 1.86799 * 119.99606 * 168.71505 * 5 3 2 8 8 H 1.48497 * 109.47143 * 94.98521 * 7 5 3 9 9 H 1.48499 * 109.46892 * 214.98280 * 7 5 3 10 10 H 1.48498 * 109.47215 * 334.98380 * 7 5 3 11 11 C 1.46500 * 119.99748 * 180.26903 * 2 1 3 12 12 C 1.52997 * 109.47178 * 264.92191 * 11 2 1 13 13 H 1.09007 * 109.58382 * 297.48553 * 12 11 2 14 14 C 1.53182 * 109.59134 * 57.77156 * 12 11 2 15 15 C 1.53041 * 109.31377 * 174.42217 * 14 12 11 16 16 C 1.53038 * 109.53741 * 298.63216 * 15 14 12 17 17 C 1.53192 * 109.31185 * 61.37115 * 16 15 14 18 18 N 1.46928 * 109.58606 * 177.06736 * 12 11 2 19 19 C 1.34779 * 120.63250 * 6.61579 * 18 12 11 20 20 O 1.21283 * 119.99797 * 4.96877 * 19 18 12 21 21 C 1.50696 * 120.00426 * 184.96572 * 19 18 12 22 22 C 1.52992 * 109.47479 * 185.20464 * 21 19 18 23 23 H 1.08998 * 110.34529 * 303.47777 * 22 21 19 24 24 C 1.51101 * 110.38752 * 65.76607 * 22 21 19 25 25 C 1.30534 * 111.10449 * 135.25182 * 24 22 21 26 26 C 1.51105 * 111.10197 * 359.97438 * 25 24 22 27 27 C 1.54633 * 110.39096 * 181.19297 * 22 21 19 28 28 H 1.09006 * 109.47085 * 90.11522 * 1 2 3 29 29 H 1.09000 * 109.47390 * 210.10866 * 1 2 3 30 30 H 1.09002 * 109.47364 * 330.11341 * 1 2 3 31 31 H 0.97004 * 120.00004 * 180.02562 * 6 5 3 32 32 H 1.09010 * 109.47119 * 24.92080 * 11 2 1 33 33 H 1.08999 * 109.46973 * 144.91559 * 11 2 1 34 34 H 1.09004 * 109.50081 * 294.37736 * 14 12 11 35 35 H 1.09008 * 109.49524 * 54.44019 * 14 12 11 36 36 H 1.08998 * 109.46113 * 58.65959 * 15 14 12 37 37 H 1.09008 * 109.45877 * 178.63160 * 15 14 12 38 38 H 1.09000 * 109.49747 * 181.31386 * 16 15 14 39 39 H 1.08998 * 109.50167 * 301.41322 * 16 15 14 40 40 H 1.08993 * 109.58960 * 65.14312 * 17 16 15 41 41 H 1.09001 * 109.58733 * 185.43550 * 17 16 15 42 42 H 1.09003 * 109.46694 * 305.20470 * 21 19 18 43 43 H 1.09001 * 109.46979 * 65.19791 * 21 19 18 44 44 H 1.08002 * 124.45084 * 315.22968 * 24 22 21 45 45 H 1.07995 * 124.44843 * 179.97438 * 25 24 22 46 46 H 1.08993 * 110.38541 * 102.37553 * 26 25 24 47 47 H 1.09006 * 110.38564 * 224.64047 * 26 25 24 48 48 H 1.09004 * 111.03520 * 334.58891 * 27 22 21 49 49 H 1.08998 * 111.04191 * 98.52043 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1664 1.2224 0.3626 5 6 1.5371 2.3410 -0.4661 6 7 0.3914 2.2646 -1.1094 7 14 2.3388 4.0038 -0.1803 8 1 3.1455 4.3755 -1.3704 9 1 1.2874 5.0281 0.0445 10 1 3.2208 3.9298 1.0120 11 6 2.1975 -1.2687 -0.0060 12 6 2.5630 -1.6533 1.4291 13 1 3.2249 -0.8978 1.8525 14 6 1.2895 -1.7524 2.2746 15 6 1.6469 -2.2714 3.6692 16 6 2.2598 -3.6689 3.5536 17 6 3.5444 -3.5917 2.7227 18 7 3.2359 -2.9595 1.4327 19 6 3.5642 -3.5661 0.2748 20 8 3.3867 -2.9952 -0.7804 21 6 4.1518 -4.9537 0.2912 22 6 4.5515 -5.3552 -1.1300 23 1 3.6934 -5.2865 -1.7986 24 6 5.6779 -4.4794 -1.6273 25 6 6.6011 -5.1901 -2.2158 26 6 6.2445 -6.6585 -2.2086 27 6 5.1302 -6.7891 -1.1421 28 1 -0.3633 -0.0021 -1.0277 29 1 -0.3634 -0.8890 0.5155 30 1 -0.3634 0.8910 0.5121 31 1 -0.0366 3.0718 -1.4354 32 1 1.5719 -2.0474 -0.4427 33 1 3.1074 -1.1602 -0.5961 34 1 0.8316 -0.7668 2.3594 35 1 0.5894 -2.4391 1.7987 36 1 2.3657 -1.5969 4.1345 37 1 0.7458 -2.3197 4.2806 38 1 2.4926 -4.0475 4.5489 39 1 1.5508 -4.3380 3.0661 40 1 4.2874 -2.9960 3.2530 41 1 3.9328 -4.5964 2.5560 42 1 5.0320 -4.9678 0.9339 43 1 3.4118 -5.6571 0.6731 44 1 5.7142 -3.4062 -1.5113 45 1 7.5015 -4.7822 -2.6508 46 1 5.8694 -6.9629 -3.1856 47 1 7.1115 -7.2584 -1.9317 48 1 5.5486 -7.0504 -0.1701 49 1 4.3754 -7.5132 -1.4487 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157504166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:21 Heat of formation + Delta-G solvation = 12.563975 kcal Electronic energy + Delta-G solvation = -26709.049753 eV Core-core repulsion = 23251.308171 eV Total energy + Delta-G solvation = -3457.741581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.38027 -38.67023 -36.94263 -35.41144 -32.78539 -32.20223 -31.12164 -29.88370 -28.95557 -26.80522 -25.75438 -25.22799 -24.18987 -22.29286 -20.96862 -20.41158 -20.24342 -19.00487 -18.23103 -16.93786 -16.25536 -15.81185 -15.68644 -15.55001 -14.65690 -14.55809 -14.25994 -14.01614 -13.62779 -13.51230 -13.13897 -13.01652 -12.63647 -12.43709 -12.33520 -11.95255 -11.87591 -11.84306 -11.44015 -11.33643 -11.23034 -11.14297 -10.84868 -10.82146 -10.77565 -10.66504 -10.62067 -10.37975 -10.27048 -9.97157 -9.80247 -9.74783 -8.87613 -8.65972 -8.38992 -8.13262 -6.55811 -5.60240 -3.03689 2.33880 2.97733 3.28098 3.44756 3.50970 3.52649 4.47100 4.55899 4.61641 4.73502 4.84269 4.88737 4.96776 5.12543 5.19605 5.30695 5.35635 5.41064 5.48460 5.52503 5.55004 5.57174 5.61697 5.70161 5.76349 5.79243 5.87299 5.92439 5.98177 6.01541 6.12926 6.16732 6.19647 6.23588 6.43807 6.51258 6.62457 6.67311 6.87292 6.94018 6.99011 7.06012 7.39095 7.57482 7.79564 7.85421 7.93045 8.50292 8.64697 9.39245 10.04085 10.53476 11.46087 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.004226 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.927868 B = 6623.968233 C = 7908.886884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.603 5.603 3 C -0.247 4.247 4 H 0.065 0.935 5 C -0.001 4.001 6 N -0.910 5.910 7 Si 0.901 3.099 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.164 3.836 12 C 0.123 3.877 13 H 0.066 0.934 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.133 4.133 17 C 0.107 3.893 18 N -0.608 5.608 19 C 0.507 3.493 20 O -0.518 6.518 21 C -0.132 4.132 22 C -0.055 4.055 23 H 0.092 0.908 24 C -0.134 4.134 25 C -0.190 4.190 26 C -0.097 4.097 27 C -0.122 4.122 28 H 0.018 0.982 29 H -0.006 1.006 30 H 0.049 0.951 31 H 0.250 0.750 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.093 -19.489 7.557 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.377 4.377 4 H 0.083 0.917 5 C -0.198 4.198 6 N -0.556 5.556 7 Si 0.731 3.269 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.037 3.963 12 C 0.019 3.981 13 H 0.084 0.916 14 C -0.158 4.158 15 C -0.159 4.159 16 C -0.171 4.171 17 C -0.016 4.016 18 N -0.343 5.343 19 C 0.295 3.705 20 O -0.394 6.394 21 C -0.172 4.172 22 C -0.073 4.073 23 H 0.110 0.890 24 C -0.152 4.152 25 C -0.208 4.208 26 C -0.134 4.134 27 C -0.159 4.159 28 H 0.036 0.964 29 H 0.013 0.987 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.145 0.855 45 H 0.138 0.862 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.870 -19.039 6.905 21.728 hybrid contribution 0.349 1.079 0.322 1.179 sum 8.219 -17.960 7.227 21.032 Atomic orbital electron populations 1.20808 0.83091 0.95995 0.98236 1.44152 1.01740 1.01092 1.85642 1.19185 0.97813 0.85717 1.34937 0.91703 1.24994 0.97793 0.98349 0.98682 1.70081 1.18292 1.26823 1.40426 0.86293 0.78317 0.84439 0.77832 1.21622 1.21749 1.20631 1.21301 0.97339 0.87430 0.90208 1.22373 0.92374 0.81513 1.01883 0.91641 1.21903 0.97738 1.02302 0.93838 1.21558 1.00381 0.95774 0.98142 1.21903 0.97357 0.98309 0.99536 1.21677 0.97071 0.98042 0.84836 1.48369 1.59395 1.21419 1.05142 1.20594 0.78445 0.87695 0.83798 1.90812 1.53045 1.64776 1.30769 1.21766 1.01658 0.95019 0.98736 1.20833 0.98210 0.93059 0.95215 0.89040 1.23366 0.94235 0.99737 0.97838 1.23207 0.99701 0.95519 1.02344 1.21335 0.98092 0.94840 0.99149 1.22579 0.97841 0.96227 0.99279 0.96372 0.98721 0.93259 0.93965 0.93903 0.90961 0.89655 0.92587 0.92095 0.92268 0.91379 0.91754 0.91723 0.90269 0.89459 0.89184 0.85521 0.86207 0.91071 0.91617 0.91113 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.22 7.98 59.85 0.48 4.70 16 2 N -0.60 -15.92 2.51 -181.11 -0.45 -16.38 16 3 C -0.25 -7.06 9.66 -15.06 -0.15 -7.20 16 4 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 5 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16 6 N -0.91 -27.63 10.64 55.49 0.59 -27.04 16 7 Si 0.90 22.59 29.57 -169.99 -5.03 17.57 16 8 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 C 0.16 3.78 3.62 -4.04 -0.01 3.76 16 12 C 0.12 2.28 3.20 -67.61 -0.22 2.07 16 13 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.12 -2.00 4.04 -26.62 -0.11 -2.11 16 15 C -0.12 -1.54 5.88 -26.69 -0.16 -1.70 16 16 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 17 C 0.11 1.15 6.32 -3.71 -0.02 1.12 16 18 N -0.61 -9.05 2.97 -165.22 -0.49 -9.54 16 19 C 0.51 7.79 7.22 -10.99 -0.08 7.71 16 20 O -0.52 -10.14 10.39 5.56 0.06 -10.08 16 21 C -0.13 -1.42 3.54 -27.89 -0.10 -1.52 16 22 C -0.05 -0.63 2.54 -90.72 -0.23 -0.86 16 23 H 0.09 1.22 7.96 -51.93 -0.41 0.80 16 24 C -0.13 -1.72 9.21 -35.70 -0.33 -2.05 16 25 C -0.19 -2.10 10.78 -35.70 -0.38 -2.48 16 26 C -0.10 -0.88 6.81 -26.74 -0.18 -1.06 16 27 C -0.12 -1.06 6.72 -24.93 -0.17 -1.23 16 28 H 0.02 0.51 7.65 -51.93 -0.40 0.11 16 29 H -0.01 -0.13 6.58 -51.93 -0.34 -0.47 16 30 H 0.05 1.35 6.92 -51.93 -0.36 0.99 16 31 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.04 1.02 7.04 -51.92 -0.37 0.65 16 33 H 0.07 1.84 6.28 -51.93 -0.33 1.51 16 34 H 0.08 1.65 6.90 -51.93 -0.36 1.29 16 35 H 0.06 0.96 7.83 -51.92 -0.41 0.56 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.64 5.92 -51.93 -0.31 0.33 16 42 H 0.09 0.80 7.46 -51.93 -0.39 0.42 16 43 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 44 H 0.13 1.90 7.43 -52.49 -0.39 1.51 16 45 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.53 7.91 -51.93 -0.41 0.12 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -32.34 367.55 -10.35 -42.69 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.66 Total: -0.27 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.91 Total: -2.48 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.36 Total: -52.96 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.06 Total: -10.08 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.34 -10.35 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157504166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.256 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds