Wall clock time and date at job start Tue Mar 31 2020 09:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 120.00188 * 2 1 4 4 H 1.07998 * 119.99906 * 157.19169 * 3 2 1 5 5 C 1.38816 * 119.99656 * 337.18816 * 3 2 1 6 6 N 1.31615 * 120.00033 * 348.71418 * 5 3 2 7 7 Si 1.86799 * 119.99606 * 168.71505 * 5 3 2 8 8 H 1.48497 * 109.47143 * 94.98521 * 7 5 3 9 9 H 1.48499 * 109.46892 * 214.98280 * 7 5 3 10 10 H 1.48498 * 109.47215 * 334.98380 * 7 5 3 11 11 C 1.46500 * 119.99748 * 180.26903 * 2 1 3 12 12 C 1.52997 * 109.47178 * 264.92191 * 11 2 1 13 13 H 1.09007 * 109.58382 * 297.48553 * 12 11 2 14 14 C 1.53182 * 109.59134 * 57.77156 * 12 11 2 15 15 C 1.53041 * 109.31377 * 174.42217 * 14 12 11 16 16 C 1.53038 * 109.53741 * 298.63216 * 15 14 12 17 17 C 1.53192 * 109.31185 * 61.37115 * 16 15 14 18 18 N 1.46928 * 109.58606 * 177.06736 * 12 11 2 19 19 C 1.34779 * 120.63250 * 6.61579 * 18 12 11 20 20 O 1.21283 * 119.99797 * 4.96877 * 19 18 12 21 21 C 1.50696 * 120.00426 * 184.96572 * 19 18 12 22 22 C 1.52992 * 109.47479 * 185.20464 * 21 19 18 23 23 H 1.08998 * 110.34529 * 303.47777 * 22 21 19 24 24 C 1.51101 * 110.38752 * 65.76607 * 22 21 19 25 25 C 1.30534 * 111.10449 * 135.25182 * 24 22 21 26 26 C 1.51105 * 111.10197 * 359.97438 * 25 24 22 27 27 C 1.54633 * 110.39096 * 181.19297 * 22 21 19 28 28 H 1.09006 * 109.47085 * 90.11522 * 1 2 3 29 29 H 1.09000 * 109.47390 * 210.10866 * 1 2 3 30 30 H 1.09002 * 109.47364 * 330.11341 * 1 2 3 31 31 H 0.97004 * 120.00004 * 180.02562 * 6 5 3 32 32 H 1.09010 * 109.47119 * 24.92080 * 11 2 1 33 33 H 1.08999 * 109.46973 * 144.91559 * 11 2 1 34 34 H 1.09004 * 109.50081 * 294.37736 * 14 12 11 35 35 H 1.09008 * 109.49524 * 54.44019 * 14 12 11 36 36 H 1.08998 * 109.46113 * 58.65959 * 15 14 12 37 37 H 1.09008 * 109.45877 * 178.63160 * 15 14 12 38 38 H 1.09000 * 109.49747 * 181.31386 * 16 15 14 39 39 H 1.08998 * 109.50167 * 301.41322 * 16 15 14 40 40 H 1.08993 * 109.58960 * 65.14312 * 17 16 15 41 41 H 1.09001 * 109.58733 * 185.43550 * 17 16 15 42 42 H 1.09003 * 109.46694 * 305.20470 * 21 19 18 43 43 H 1.09001 * 109.46979 * 65.19791 * 21 19 18 44 44 H 1.08002 * 124.45084 * 315.22968 * 24 22 21 45 45 H 1.07995 * 124.44843 * 179.97438 * 25 24 22 46 46 H 1.08993 * 110.38541 * 102.37553 * 26 25 24 47 47 H 1.09006 * 110.38564 * 224.64047 * 26 25 24 48 48 H 1.09004 * 111.03520 * 334.58891 * 27 22 21 49 49 H 1.08998 * 111.04191 * 98.52043 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1664 1.2224 0.3626 5 6 1.5371 2.3410 -0.4661 6 7 0.3914 2.2646 -1.1094 7 14 2.3388 4.0038 -0.1803 8 1 3.1455 4.3755 -1.3704 9 1 1.2874 5.0281 0.0445 10 1 3.2208 3.9298 1.0120 11 6 2.1975 -1.2687 -0.0060 12 6 2.5630 -1.6533 1.4291 13 1 3.2249 -0.8978 1.8525 14 6 1.2895 -1.7524 2.2746 15 6 1.6469 -2.2714 3.6692 16 6 2.2598 -3.6689 3.5536 17 6 3.5444 -3.5917 2.7227 18 7 3.2359 -2.9595 1.4327 19 6 3.5642 -3.5661 0.2748 20 8 3.3867 -2.9952 -0.7804 21 6 4.1518 -4.9537 0.2912 22 6 4.5515 -5.3552 -1.1300 23 1 3.6934 -5.2865 -1.7986 24 6 5.6779 -4.4794 -1.6273 25 6 6.6011 -5.1901 -2.2158 26 6 6.2445 -6.6585 -2.2086 27 6 5.1302 -6.7891 -1.1421 28 1 -0.3633 -0.0021 -1.0277 29 1 -0.3634 -0.8890 0.5155 30 1 -0.3634 0.8910 0.5121 31 1 -0.0366 3.0718 -1.4354 32 1 1.5719 -2.0474 -0.4427 33 1 3.1074 -1.1602 -0.5961 34 1 0.8316 -0.7668 2.3594 35 1 0.5894 -2.4391 1.7987 36 1 2.3657 -1.5969 4.1345 37 1 0.7458 -2.3197 4.2806 38 1 2.4926 -4.0475 4.5489 39 1 1.5508 -4.3380 3.0661 40 1 4.2874 -2.9960 3.2530 41 1 3.9328 -4.5964 2.5560 42 1 5.0320 -4.9678 0.9339 43 1 3.4118 -5.6571 0.6731 44 1 5.7142 -3.4062 -1.5113 45 1 7.5015 -4.7822 -2.6508 46 1 5.8694 -6.9629 -3.1856 47 1 7.1115 -7.2584 -1.9317 48 1 5.5486 -7.0504 -0.1701 49 1 4.3754 -7.5132 -1.4487 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157504166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:20 Heat of formation + Delta-G solvation = -5.518854 kcal Electronic energy + Delta-G solvation = -26709.833883 eV Core-core repulsion = 23251.308171 eV Total energy + Delta-G solvation = -3458.525711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59764 -39.62147 -38.17949 -37.30058 -34.17233 -33.67858 -32.42713 -31.40042 -29.74740 -28.42405 -27.69990 -26.54319 -25.30589 -23.84299 -22.38849 -21.71775 -21.22107 -20.10300 -19.25922 -18.79991 -17.68190 -17.16248 -16.80398 -16.64411 -16.43537 -15.66169 -15.45166 -15.34302 -15.08512 -14.88287 -14.61926 -14.38306 -14.16465 -13.99047 -13.46295 -13.07110 -13.04708 -12.86828 -12.74593 -12.67915 -12.63404 -12.55448 -12.37753 -12.07796 -12.06163 -12.01131 -11.88091 -11.83668 -11.70405 -11.64223 -11.51505 -11.38760 -10.64351 -10.06916 -9.76427 -9.42710 -8.73560 -7.84387 -5.31375 1.40684 1.42447 1.43875 1.54033 1.79940 2.10213 2.51035 3.29010 3.55747 3.74334 3.78675 3.91075 3.97545 3.98124 4.02733 4.11070 4.20319 4.39598 4.40659 4.45274 4.58813 4.59518 4.65492 4.69248 4.71677 4.79591 4.85870 4.88597 5.00443 5.03462 5.05098 5.06823 5.13996 5.15947 5.21896 5.24267 5.30876 5.33776 5.42185 5.46905 5.50564 5.57815 5.66001 5.72154 5.81156 6.00552 6.32048 6.63974 7.14831 7.39477 7.88643 8.33121 9.20843 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.004226 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.927868 B = 6623.968233 C = 7908.886884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.618 5.618 3 C -0.259 4.259 4 H 0.063 0.937 5 C -0.055 4.055 6 N -0.943 5.943 7 Si 0.971 3.029 8 H -0.289 1.289 9 H -0.288 1.288 10 H -0.267 1.267 11 C 0.178 3.822 12 C 0.137 3.863 13 H 0.046 0.954 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.126 4.126 17 C 0.100 3.900 18 N -0.609 5.609 19 C 0.496 3.504 20 O -0.573 6.573 21 C -0.118 4.118 22 C -0.055 4.055 23 H 0.062 0.938 24 C -0.169 4.169 25 C -0.176 4.176 26 C -0.098 4.098 27 C -0.111 4.111 28 H -0.015 1.015 29 H 0.025 0.975 30 H 0.028 0.972 31 H 0.248 0.752 32 H 0.029 0.971 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.681 -22.489 10.178 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.343 5.343 3 C -0.389 4.389 4 H 0.081 0.919 5 C -0.249 4.249 6 N -0.590 5.590 7 Si 0.798 3.202 8 H -0.216 1.216 9 H -0.214 1.214 10 H -0.192 1.192 11 C 0.052 3.948 12 C 0.031 3.969 13 H 0.064 0.936 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.163 4.163 17 C -0.021 4.021 18 N -0.343 5.343 19 C 0.286 3.714 20 O -0.452 6.452 21 C -0.157 4.157 22 C -0.074 4.074 23 H 0.080 0.920 24 C -0.187 4.187 25 C -0.194 4.194 26 C -0.135 4.135 27 C -0.148 4.148 28 H 0.004 0.996 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.108 0.892 45 H 0.143 0.857 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.112 0.888 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.490 -22.095 9.576 25.883 hybrid contribution -0.081 1.975 -0.578 2.060 sum 9.409 -20.119 8.999 23.964 Atomic orbital electron populations 1.20500 0.83021 0.96312 0.96241 1.44386 1.02036 1.01828 1.86003 1.19455 0.97949 0.86846 1.34630 0.91948 1.25815 0.98536 1.01964 0.98628 1.70259 1.19707 1.27537 1.41511 0.85206 0.77444 0.79584 0.77933 1.21580 1.21431 1.19208 1.21132 0.95056 0.85619 0.92960 1.21735 0.93401 0.83476 0.98306 0.93585 1.21756 0.96160 1.00687 0.96413 1.21534 1.01376 0.97496 0.94999 1.21896 0.96698 0.96314 1.01439 1.22071 0.97836 0.99725 0.82492 1.48445 1.58708 1.19963 1.07208 1.21570 0.77570 0.89312 0.82950 1.90796 1.55218 1.66397 1.32789 1.21786 1.03059 0.91812 0.99060 1.20821 0.96716 0.94874 0.94989 0.91951 1.23264 0.96265 0.98428 1.00726 1.23521 0.98958 0.96972 0.99921 1.21414 0.99209 0.93141 0.99733 1.22581 0.97801 0.94057 1.00350 0.99628 0.95695 0.95308 0.94272 0.95272 0.94198 0.92843 0.93195 0.92095 0.90800 0.87700 0.91525 0.90939 0.86467 0.86740 0.86056 0.89159 0.85676 0.90710 0.89373 0.88827 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.04 7.98 127.77 1.02 11.06 16 2 N -0.62 -34.51 2.51 -726.91 -1.82 -36.33 16 3 C -0.26 -15.46 9.66 84.03 0.81 -14.64 16 4 H 0.06 3.67 7.85 -2.91 -0.02 3.65 16 5 C -0.06 -3.30 5.10 84.86 0.43 -2.87 16 6 N -0.94 -59.53 10.64 21.65 0.23 -59.30 16 7 Si 0.97 47.69 29.57 68.60 2.03 49.72 16 8 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 9 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 C 0.18 8.72 3.62 86.38 0.31 9.03 16 12 C 0.14 5.21 3.20 44.97 0.14 5.35 16 13 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 14 C -0.11 -3.75 4.04 30.67 0.12 -3.63 16 15 C -0.12 -2.69 5.88 30.62 0.18 -2.51 16 16 C -0.13 -2.03 6.08 30.67 0.19 -1.85 16 17 C 0.10 1.76 6.32 86.36 0.55 2.31 16 18 N -0.61 -17.64 2.97 -795.03 -2.36 -20.00 16 19 C 0.50 15.28 7.22 87.66 0.63 15.91 16 20 O -0.57 -23.99 10.39 -3.04 -0.03 -24.02 16 21 C -0.12 -2.25 3.54 29.84 0.11 -2.14 16 22 C -0.06 -1.22 2.54 -10.86 -0.03 -1.24 16 23 H 0.06 1.71 7.96 -2.39 -0.02 1.69 16 24 C -0.17 -4.45 9.21 26.25 0.24 -4.21 16 25 C -0.18 -3.73 10.78 26.26 0.28 -3.44 16 26 C -0.10 -1.50 6.81 30.59 0.21 -1.29 16 27 C -0.11 -1.54 6.72 31.76 0.21 -1.32 16 28 H -0.01 -0.88 7.65 -2.38 -0.02 -0.90 16 29 H 0.02 1.17 6.58 -2.39 -0.02 1.15 16 30 H 0.03 1.65 6.92 -2.39 -0.02 1.63 16 31 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.03 1.48 7.04 -2.38 -0.02 1.46 16 33 H 0.04 2.20 6.28 -2.39 -0.01 2.19 16 34 H 0.05 2.12 6.90 -2.38 -0.02 2.10 16 35 H 0.05 1.71 7.83 -2.38 -0.02 1.69 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.12 1.22 5.92 -2.39 -0.01 1.21 16 42 H 0.11 1.61 7.46 -2.39 -0.02 1.60 16 43 H 0.12 1.61 8.08 -2.39 -0.02 1.59 16 44 H 0.09 3.00 7.43 -2.91 -0.02 2.98 16 45 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.09 1.00 8.14 -2.38 -0.02 0.99 16 48 H 0.09 0.91 7.91 -2.39 -0.02 0.90 16 49 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -77.32 367.55 4.36 -72.96 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.90 Total: 12.46 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 5.41 Total: 4.51 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -3.96 Total: -115.63 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.03 Total: -24.02 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -77.32 4.36 -72.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157504166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.445 kcal (2) G-P(sol) polarization free energy of solvation -77.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds