Wall clock time and date at job start Tue Mar 31 2020 09:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47084 * 212.70152 * 3 2 1 5 5 C 1.37101 * 119.99923 * 91.49551 * 4 3 2 6 6 H 1.08004 * 120.00453 * 157.76829 * 5 4 3 7 7 C 1.38950 * 119.99902 * 337.77254 * 5 4 3 8 8 N 1.31412 * 120.00223 * 335.74928 * 7 5 4 9 9 Si 1.86808 * 119.99839 * 155.75361 * 7 5 4 10 10 H 1.48497 * 109.47168 * 60.00188 * 9 7 5 11 11 H 1.48501 * 109.46869 * 179.97438 * 9 7 5 12 12 H 1.48488 * 109.47145 * 299.99640 * 9 7 5 13 13 C 1.34774 * 120.00476 * 271.49793 * 4 3 2 14 14 O 1.21287 * 120.00333 * 184.99332 * 13 4 3 15 15 C 1.50703 * 119.99702 * 4.98560 * 13 4 3 16 16 H 1.09005 * 109.55208 * 26.20776 * 15 13 4 17 17 S 1.81481 * 109.55805 * 265.89591 * 15 13 4 18 18 C 1.81917 * 101.35772 * 194.47544 * 17 15 13 19 19 C 1.52432 * 108.27008 * 64.91464 * 18 17 15 20 20 C 1.51387 * 111.72630 * 307.88126 * 19 18 17 21 21 S 1.76880 * 121.93014 * 199.52500 * 20 19 18 22 22 C 1.75449 * 91.28970 * 180.59563 * 21 20 19 23 23 C 1.32408 * 109.45397 * 359.80517 * 22 21 20 24 24 C 1.33954 * 128.51273 * 19.63345 * 20 19 18 25 25 H 4.40634 * 5.51459 * 179.97438 * 4 1 2 26 26 H 1.09006 * 109.47494 * 332.70336 * 3 2 1 27 27 H 1.09004 * 109.47448 * 92.70766 * 3 2 1 28 28 H 0.96996 * 120.00011 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.70099 * 305.21716 * 18 17 15 30 30 H 1.09000 * 109.70581 * 184.60766 * 18 17 15 31 31 H 1.09002 * 109.03283 * 187.30702 * 19 18 17 32 32 H 1.08999 * 108.97644 * 68.41738 * 19 18 17 33 33 H 1.08005 * 125.26885 * 179.80211 * 22 21 20 34 34 H 1.08002 * 122.03799 * 179.86466 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.1632 0.7462 5 6 3.3915 1.0572 2.0886 6 1 4.0655 1.7533 2.5658 7 6 2.7856 0.0541 2.8353 8 7 1.6536 -0.4751 2.4286 9 14 3.5803 -0.5420 4.4173 10 1 3.6994 0.5915 5.3692 11 1 2.7418 -1.6086 5.0210 12 1 4.9309 -1.0825 4.1197 13 6 3.3291 2.3369 0.1132 14 8 3.8179 3.2733 0.7091 15 6 2.9403 2.4856 -1.3352 16 1 2.1405 1.7838 -1.5721 17 16 4.3794 2.1486 -2.3882 18 6 3.8157 2.8083 -3.9871 19 6 3.6326 4.3149 -3.8447 20 6 2.7579 4.6635 -2.6594 21 16 1.9538 6.2328 -2.5195 22 6 1.2531 5.7807 -0.9759 23 6 1.6300 4.5503 -0.6639 24 6 2.4614 3.9110 -1.5915 25 1 -1.0502 -0.0002 -0.0003 26 1 3.0097 -0.9124 0.4713 27 1 3.0093 0.0494 -1.0265 28 1 1.2305 -1.1750 2.9501 29 1 2.8669 2.3470 -4.2610 30 1 4.5614 2.5996 -4.7543 31 1 3.1724 4.7044 -4.7527 32 1 4.6098 4.7799 -3.7141 33 1 0.6134 6.4088 -0.3735 34 1 1.3149 4.0690 0.2502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281470407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:22 Heat of formation + Delta-G solvation = 74.749929 kcal Electronic energy + Delta-G solvation = -20769.481982 eV Core-core repulsion = 17694.724782 eV Total energy + Delta-G solvation = -3074.757200 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 307.044 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.20870 -37.63276 -35.16968 -33.82297 -32.23543 -31.30480 -30.20049 -27.65266 -26.41554 -24.92401 -23.49263 -22.10092 -19.68282 -18.04325 -17.80435 -17.30205 -16.68725 -16.25978 -15.94195 -15.22876 -14.77269 -14.58123 -13.97499 -13.84620 -13.53740 -13.21546 -12.98364 -12.68652 -12.48740 -12.25425 -12.14345 -11.75628 -11.63032 -11.43407 -11.11486 -10.97126 -10.64301 -10.56943 -10.38066 -9.75644 -9.37068 -9.22628 -8.99327 -8.58778 -8.31307 -8.06028 -7.90035 -7.44191 -6.36863 -3.93648 1.21509 1.68285 1.82879 2.16128 2.58811 2.98416 3.16437 3.22406 3.26406 3.69617 3.99743 4.05367 4.14700 4.63843 4.76928 4.85563 4.97202 5.05886 5.17701 5.31096 5.44625 5.51221 5.56736 5.60315 5.75448 5.81907 6.06339 6.24598 6.28989 6.54362 6.57107 6.76382 6.98507 7.49759 7.97308 8.33809 8.84790 9.04359 9.24557 9.80786 10.58124 Molecular weight = 307.04amu Principal moments of inertia in cm(-1) A = 0.019083 B = 0.005131 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.937693 B = 5455.524597 C = 5753.604336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.116 4.116 3 C 0.227 3.773 4 N -0.425 5.425 5 C -0.318 4.318 6 H 0.105 0.895 7 C 0.037 3.963 8 N -0.845 5.845 9 Si 0.919 3.081 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.471 3.529 14 O -0.558 6.558 15 C -0.010 4.010 16 H 0.111 0.889 17 S -0.222 6.222 18 C -0.088 4.088 19 C -0.044 4.044 20 C -0.171 4.171 21 S 0.061 5.939 22 C -0.213 4.213 23 C -0.093 4.093 24 C -0.064 4.064 25 H 0.198 0.802 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.270 0.730 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.164 0.836 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.229 4.522 -12.429 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.118 4.118 3 C 0.104 3.896 4 N -0.143 5.143 5 C -0.446 4.446 6 H 0.123 0.877 7 C -0.170 4.170 8 N -0.481 5.481 9 Si 0.745 3.255 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.257 3.743 14 O -0.441 6.441 15 C -0.144 4.144 16 H 0.129 0.871 17 S 0.007 5.993 18 C -0.237 4.237 19 C -0.085 4.085 20 C -0.288 4.288 21 S 0.325 5.675 22 C -0.347 4.347 23 C -0.124 4.124 24 C -0.078 4.078 25 H 0.215 0.785 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.181 0.819 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.184 5.664 -12.679 13.888 hybrid contribution -1.310 -1.129 1.612 2.364 sum -1.494 4.535 -11.067 12.053 Atomic orbital electron populations 1.24174 0.95236 1.01738 1.05840 1.22932 0.94161 0.98979 0.95754 1.18292 0.84698 0.91658 0.94988 1.43642 1.55740 1.06284 1.08660 1.19593 1.25968 1.16180 0.82837 0.87737 1.25359 0.94363 0.97869 0.99375 1.70125 1.12659 1.25713 1.39573 0.86107 0.79319 0.78622 0.81404 1.19731 1.20987 1.19698 1.18977 0.86107 0.83451 0.85805 1.90560 1.47651 1.38776 1.67096 1.22450 0.98295 0.95507 0.98115 0.87130 1.87195 1.26702 1.79681 1.05710 1.23322 1.05246 0.97210 0.97972 1.20200 0.98960 0.95362 0.93938 1.24265 1.06234 0.97337 1.00997 1.83961 1.47568 1.16342 1.19674 1.25014 1.08657 1.00493 1.00574 1.20222 0.97459 0.94557 1.00193 1.19039 0.99530 0.95403 0.93872 0.78528 0.88330 0.90946 0.91913 0.89452 0.86908 0.89999 0.89207 0.81868 0.84045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.12 19.04 29.55 0.56 -4.55 16 2 C -0.12 -2.56 10.13 -37.12 -0.38 -2.93 16 3 C 0.23 4.97 4.80 -6.83 -0.03 4.94 16 4 N -0.42 -10.59 2.58 -117.93 -0.30 -10.89 16 5 C -0.32 -8.58 9.23 -14.93 -0.14 -8.71 16 6 H 0.10 2.98 7.45 -52.48 -0.39 2.59 16 7 C 0.04 0.94 4.78 -17.47 -0.08 0.86 16 8 N -0.84 -21.60 9.45 55.50 0.52 -21.08 16 9 Si 0.92 20.05 29.62 -169.99 -5.03 15.02 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 C 0.47 11.43 5.87 -10.99 -0.06 11.37 16 14 O -0.56 -15.45 15.48 5.55 0.09 -15.37 16 15 C -0.01 -0.19 2.33 -28.12 -0.07 -0.26 16 16 H 0.11 2.13 5.98 -51.92 -0.31 1.82 16 17 S -0.22 -3.81 21.22 -107.50 -2.28 -6.09 16 18 C -0.09 -1.06 6.52 36.87 0.24 -0.82 16 19 C -0.04 -0.54 5.90 -27.84 -0.16 -0.70 16 20 C -0.17 -2.69 6.28 -35.48 -0.22 -2.92 16 21 S 0.06 0.85 23.25 -107.50 -2.50 -1.65 16 22 C -0.21 -3.35 11.18 28.81 0.32 -3.03 16 23 C -0.09 -1.77 8.68 -40.84 -0.35 -2.12 16 24 C -0.06 -1.21 5.12 -104.54 -0.53 -1.74 16 25 H 0.20 3.30 7.80 -54.08 -0.42 2.88 16 26 H 0.10 2.22 7.15 -51.93 -0.37 1.85 16 27 H 0.07 1.38 6.42 -51.93 -0.33 1.05 16 28 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.16 2.13 8.06 -52.48 -0.42 1.71 16 34 H 0.14 2.97 7.62 -52.49 -0.40 2.57 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -30.58 314.12 -9.16 -39.74 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -3.48 Total: 6.20 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.91 Total: -10.62 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.22 Total: -31.97 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.09 Total: -15.37 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -4.78 Total: -7.75 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.58 -9.16 -39.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281470407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.490 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds