Wall clock time and date at job start Tue Mar 31 2020 09:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47084 * 212.70152 * 3 2 1 5 5 C 1.37101 * 119.99923 * 91.49551 * 4 3 2 6 6 H 1.08004 * 120.00453 * 157.76829 * 5 4 3 7 7 C 1.38950 * 119.99902 * 337.77254 * 5 4 3 8 8 N 1.31412 * 120.00223 * 335.74928 * 7 5 4 9 9 Si 1.86808 * 119.99839 * 155.75361 * 7 5 4 10 10 H 1.48497 * 109.47168 * 60.00188 * 9 7 5 11 11 H 1.48501 * 109.46869 * 179.97438 * 9 7 5 12 12 H 1.48488 * 109.47145 * 299.99640 * 9 7 5 13 13 C 1.34774 * 120.00476 * 271.49793 * 4 3 2 14 14 O 1.21287 * 120.00333 * 184.99332 * 13 4 3 15 15 C 1.50703 * 119.99702 * 4.98560 * 13 4 3 16 16 H 1.09005 * 109.55208 * 26.20776 * 15 13 4 17 17 S 1.81481 * 109.55805 * 265.89591 * 15 13 4 18 18 C 1.81917 * 101.35772 * 194.47544 * 17 15 13 19 19 C 1.52432 * 108.27008 * 64.91464 * 18 17 15 20 20 C 1.51387 * 111.72630 * 307.88126 * 19 18 17 21 21 S 1.76880 * 121.93014 * 199.52500 * 20 19 18 22 22 C 1.75449 * 91.28970 * 180.59563 * 21 20 19 23 23 C 1.32408 * 109.45397 * 359.80517 * 22 21 20 24 24 C 1.33954 * 128.51273 * 19.63345 * 20 19 18 25 25 H 4.40634 * 5.51459 * 179.97438 * 4 1 2 26 26 H 1.09006 * 109.47494 * 332.70336 * 3 2 1 27 27 H 1.09004 * 109.47448 * 92.70766 * 3 2 1 28 28 H 0.96996 * 120.00011 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.70099 * 305.21716 * 18 17 15 30 30 H 1.09000 * 109.70581 * 184.60766 * 18 17 15 31 31 H 1.09002 * 109.03283 * 187.30702 * 19 18 17 32 32 H 1.08999 * 108.97644 * 68.41738 * 19 18 17 33 33 H 1.08005 * 125.26885 * 179.80211 * 22 21 20 34 34 H 1.08002 * 122.03799 * 179.86466 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.1632 0.7462 5 6 3.3915 1.0572 2.0886 6 1 4.0655 1.7533 2.5658 7 6 2.7856 0.0541 2.8353 8 7 1.6536 -0.4751 2.4286 9 14 3.5803 -0.5420 4.4173 10 1 3.6994 0.5915 5.3692 11 1 2.7418 -1.6086 5.0210 12 1 4.9309 -1.0825 4.1197 13 6 3.3291 2.3369 0.1132 14 8 3.8179 3.2733 0.7091 15 6 2.9403 2.4856 -1.3352 16 1 2.1405 1.7838 -1.5721 17 16 4.3794 2.1486 -2.3882 18 6 3.8157 2.8083 -3.9871 19 6 3.6326 4.3149 -3.8447 20 6 2.7579 4.6635 -2.6594 21 16 1.9538 6.2328 -2.5195 22 6 1.2531 5.7807 -0.9759 23 6 1.6300 4.5503 -0.6639 24 6 2.4614 3.9110 -1.5915 25 1 -1.0502 -0.0002 -0.0003 26 1 3.0097 -0.9124 0.4713 27 1 3.0093 0.0494 -1.0265 28 1 1.2305 -1.1750 2.9501 29 1 2.8669 2.3470 -4.2610 30 1 4.5614 2.5996 -4.7543 31 1 3.1724 4.7044 -4.7527 32 1 4.6098 4.7799 -3.7141 33 1 0.6134 6.4088 -0.3735 34 1 1.3149 4.0690 0.2502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281470407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:22 Heat of formation + Delta-G solvation = 57.818820 kcal Electronic energy + Delta-G solvation = -20770.216170 eV Core-core repulsion = 17694.724782 eV Total energy + Delta-G solvation = -3075.491388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 307.044 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91034 -39.08143 -37.06817 -34.90114 -34.12155 -33.08885 -31.70662 -28.94045 -28.16892 -26.66707 -24.84652 -23.32387 -21.38525 -19.75847 -19.23371 -18.70433 -18.40477 -18.01108 -17.21423 -16.67841 -16.49657 -16.14617 -15.49473 -15.30767 -14.77164 -14.65820 -14.38317 -14.14611 -14.08970 -13.93008 -13.67162 -13.53589 -12.85795 -12.79565 -12.57014 -12.52979 -12.34495 -12.19009 -11.83336 -11.16590 -11.12452 -10.95634 -10.73938 -10.39953 -9.86328 -9.58912 -9.24536 -8.78948 -8.31650 -5.98543 -0.04642 0.35786 0.62011 0.89984 1.36443 1.40942 1.41854 1.50736 1.60104 1.96189 2.21736 2.30677 2.38494 3.00703 3.07609 3.49304 3.69722 3.80744 3.92270 3.99447 4.12537 4.18256 4.36135 4.40974 4.58004 4.69038 4.75549 4.77690 4.92841 4.98629 5.25565 5.37851 5.42892 5.45409 6.00595 6.37703 7.07790 7.17558 7.31690 7.89882 8.61104 Molecular weight = 307.04amu Principal moments of inertia in cm(-1) A = 0.019083 B = 0.005131 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.937693 B = 5455.524597 C = 5753.604336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.154 4.154 3 C 0.233 3.767 4 N -0.438 5.438 5 C -0.358 4.358 6 H 0.073 0.927 7 C 0.010 3.990 8 N -0.856 5.856 9 Si 0.981 3.019 10 H -0.279 1.279 11 H -0.270 1.270 12 H -0.267 1.267 13 C 0.467 3.533 14 O -0.606 6.606 15 C 0.002 3.998 16 H 0.107 0.893 17 S -0.259 6.259 18 C -0.069 4.069 19 C -0.048 4.048 20 C -0.170 4.170 21 S 0.141 5.859 22 C -0.216 4.216 23 C -0.129 4.129 24 C -0.105 4.105 25 H 0.231 0.769 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.274 0.726 29 H 0.101 0.899 30 H 0.151 0.849 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.185 0.815 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 5.262 -15.268 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.156 4.156 3 C 0.111 3.889 4 N -0.156 5.156 5 C -0.486 4.486 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.491 5.491 9 Si 0.805 3.195 10 H -0.204 1.204 11 H -0.195 1.195 12 H -0.192 1.192 13 C 0.255 3.745 14 O -0.491 6.491 15 C -0.132 4.132 16 H 0.125 0.875 17 S -0.031 6.031 18 C -0.218 4.218 19 C -0.088 4.088 20 C -0.288 4.288 21 S 0.406 5.594 22 C -0.351 4.351 23 C -0.160 4.160 24 C -0.118 4.118 25 H 0.247 0.753 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.169 0.831 31 H 0.142 0.858 32 H 0.116 0.884 33 H 0.202 0.798 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.682 6.375 -15.532 16.803 hybrid contribution -1.201 -1.214 2.360 2.913 sum -1.883 5.161 -13.172 14.271 Atomic orbital electron populations 1.25001 0.96150 1.00049 1.04195 1.23152 0.94700 1.00514 0.97245 1.18270 0.85156 0.89983 0.95533 1.43783 1.56015 1.07513 1.08314 1.19450 1.27333 1.17383 0.84412 0.90863 1.26011 0.94450 0.97102 1.01987 1.70210 1.12856 1.25506 1.40500 0.85198 0.78757 0.77953 0.77638 1.20438 1.19501 1.19168 1.19702 0.84411 0.82529 0.87836 1.90496 1.49502 1.40257 1.68889 1.22024 0.98901 0.96864 0.95363 0.87493 1.87201 1.26099 1.80505 1.09257 1.23555 1.06929 0.96869 0.94471 1.20430 0.98973 0.95515 0.93907 1.24850 1.05259 0.97832 1.00874 1.83635 1.45228 1.13851 1.16710 1.25365 1.08029 0.99505 1.02204 1.20063 0.99969 0.96237 0.99769 1.19017 1.01694 0.95492 0.95645 0.75254 0.89693 0.88718 0.91594 0.88037 0.83093 0.85790 0.88407 0.79784 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.55 19.04 74.32 1.42 -8.13 16 2 C -0.15 -6.94 10.13 31.13 0.32 -6.62 16 3 C 0.23 10.66 4.80 84.57 0.41 11.07 16 4 N -0.44 -23.22 2.58 -645.41 -1.66 -24.88 16 5 C -0.36 -20.60 9.23 84.04 0.78 -19.83 16 6 H 0.07 4.55 7.45 -2.91 -0.02 4.53 16 7 C 0.01 0.54 4.78 84.93 0.41 0.94 16 8 N -0.86 -44.74 9.45 21.66 0.20 -44.53 16 9 Si 0.98 42.33 29.62 68.60 2.03 44.37 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 C 0.47 24.18 5.87 87.66 0.51 24.70 16 14 O -0.61 -36.05 15.48 -3.05 -0.05 -36.10 16 15 C 0.00 0.09 2.33 29.70 0.07 0.16 16 16 H 0.11 4.27 5.98 -2.39 -0.01 4.26 16 17 S -0.26 -8.73 21.22 -56.49 -1.20 -9.93 16 18 C -0.07 -1.40 6.52 71.79 0.47 -0.93 16 19 C -0.05 -0.96 5.90 29.88 0.18 -0.79 16 20 C -0.17 -4.95 6.28 24.93 0.16 -4.80 16 21 S 0.14 3.48 23.25 -56.49 -1.31 2.16 16 22 C -0.22 -6.67 11.18 66.71 0.75 -5.92 16 23 C -0.13 -5.09 8.68 21.59 0.19 -4.91 16 24 C -0.10 -3.95 5.12 -19.81 -0.10 -4.05 16 25 H 0.23 7.32 7.80 -4.41 -0.03 7.29 16 26 H 0.08 4.02 7.15 -2.38 -0.02 4.01 16 27 H 0.10 3.77 6.42 -2.39 -0.02 3.75 16 28 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.18 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.10 4.67 7.62 -2.91 -0.02 4.65 16 Total: -1.00 -71.93 314.12 4.67 -67.26 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 1.12 Total: 20.76 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 5.53 Total: -19.11 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -1.46 Total: -69.41 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.05 Total: -36.10 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -2.51 Total: -7.76 kcal Total: -71.93 4.67 -67.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281470407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.078 kcal (2) G-P(sol) polarization free energy of solvation -71.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds