Wall clock time and date at job start Tue Mar 31 2020 09:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31435 * 1 3 3 Si 1.86803 * 120.00214 * 2 1 4 4 H 1.48494 * 109.46904 * 269.99664 * 3 2 1 5 5 H 1.48496 * 109.46835 * 29.99771 * 3 2 1 6 6 H 1.48496 * 109.47012 * 149.99651 * 3 2 1 7 7 C 1.38760 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00162 * 0.02562 * 7 2 1 9 9 O 1.34922 * 119.99701 * 180.02562 * 7 2 1 10 10 C 1.34314 * 117.00069 * 180.02562 * 9 7 2 11 11 O 1.21215 * 119.99808 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00126 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.47091 * 180.02562 * 12 10 9 14 14 C 1.34532 * 126.08216 * 124.99974 * 13 12 10 15 15 O 1.34786 * 107.27751 * 179.97438 * 14 13 12 16 16 C 1.34434 * 107.69526 * 0.02562 * 15 14 13 17 17 C 1.47806 * 125.73287 * 179.97438 * 16 15 14 18 18 C 1.39580 * 120.12678 * 0.02562 * 17 16 15 19 19 C 1.37935 * 119.86482 * 179.97438 * 18 17 16 20 20 C 1.38482 * 120.13219 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 119.86617 * 179.97438 * 20 19 18 22 22 C 1.38480 * 120.26074 * 359.97438 * 20 19 18 23 23 C 1.37928 * 120.13482 * 0.02562 * 22 20 19 24 24 N 1.31232 * 108.54288 * 0.23983 * 16 15 14 25 25 H 0.96999 * 120.00146 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47313 * 59.99914 * 12 10 9 27 27 H 1.09000 * 109.46845 * 299.99524 * 12 10 9 28 28 H 1.07996 * 126.35871 * 359.97039 * 14 13 12 29 29 H 1.07996 * 120.07021 * 359.95419 * 18 17 16 30 30 H 1.08003 * 119.93000 * 179.72215 * 19 18 17 31 31 H 1.08006 * 119.92872 * 179.97438 * 22 20 19 32 32 H 1.07998 * 120.06643 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0463 -1.4000 5 1 1.4459 2.6526 0.7000 6 1 3.5459 1.4401 0.7001 7 6 2.0081 -1.2017 0.0005 8 1 1.4681 -2.1370 0.0005 9 8 3.3573 -1.2017 0.0011 10 6 3.9671 -2.3985 0.0010 11 8 3.3069 -3.4150 0.0010 12 6 5.4720 -2.4773 0.0022 13 6 5.8993 -3.9225 0.0013 14 6 6.7227 -4.5047 -0.8892 15 8 6.8456 -5.7991 -0.5340 16 6 6.0979 -5.9937 0.5661 17 6 5.9451 -7.2729 1.2908 18 6 6.6106 -8.4153 0.8434 19 6 6.4646 -9.6061 1.5242 20 6 5.6602 -9.6693 2.6496 21 17 5.4809 -11.1717 3.5007 22 6 4.9984 -8.5389 3.0988 23 6 5.1366 -7.3426 2.4264 24 7 5.5218 -4.8587 0.8853 25 1 -0.4850 0.8400 -0.0004 26 1 5.8611 -1.9836 0.8926 27 1 5.8624 -1.9829 -0.8873 28 1 7.1970 -4.0242 -1.7321 29 1 7.2383 -8.3672 -0.0341 30 1 6.9755 -10.4918 1.1763 31 1 4.3720 -8.5944 3.9769 32 1 4.6203 -6.4615 2.7779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729779821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:16 Heat of formation + Delta-G solvation = -32.901230 kcal Electronic energy + Delta-G solvation = -21105.111260 eV Core-core repulsion = 17445.056284 eV Total energy + Delta-G solvation = -3660.054976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 307.044 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.27726 -39.48181 -39.09819 -36.80866 -35.73780 -34.66898 -32.72990 -32.26072 -31.47795 -30.51085 -27.91210 -25.25005 -24.03204 -23.30450 -21.59820 -21.15558 -19.75467 -18.02850 -17.84418 -16.94068 -16.86957 -16.35564 -15.93132 -15.67764 -15.04064 -14.84688 -14.47575 -14.07162 -13.86381 -13.84603 -13.57864 -12.95632 -12.52595 -12.25604 -12.23381 -12.03925 -11.97241 -11.85734 -11.17954 -11.15253 -10.95526 -10.47097 -10.39659 -10.31863 -9.67333 -9.63712 -9.42220 -9.10287 -8.64818 -8.28100 -6.33029 -4.08696 0.31124 0.95701 1.65712 1.76518 2.58267 2.67441 3.16631 3.25601 3.37118 3.43224 3.45087 3.78235 4.17037 4.27719 4.45238 4.52642 4.76022 4.86902 4.91227 5.07000 5.15444 5.25864 5.39598 5.59429 5.60532 5.72474 5.83095 5.86546 5.88554 6.08916 6.20712 6.35964 6.49460 7.75113 7.78481 8.07988 8.68205 9.05497 9.72567 10.75849 Molecular weight = 307.04amu Principal moments of inertia in cm(-1) A = 0.023850 B = 0.002745 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.733982 B =10196.844365 C =11111.525964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.379 4.379 8 H 0.108 0.892 9 O -0.255 6.255 10 C 0.412 3.588 11 O -0.521 6.521 12 C -0.028 4.028 13 C 0.017 3.983 14 C -0.064 4.064 15 O -0.198 6.198 16 C 0.215 3.785 17 C -0.001 4.001 18 C -0.081 4.081 19 C -0.113 4.113 20 C -0.023 4.023 21 Cl -0.068 7.068 22 C -0.110 4.110 23 C -0.057 4.057 24 N -0.428 5.428 25 H 0.279 0.721 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.221 0.779 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.667 -15.899 2.604 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.455 4.455 8 H 0.126 0.874 9 O -0.165 6.165 10 C 0.256 3.744 11 O -0.414 6.414 12 C -0.066 4.066 13 C -0.104 4.104 14 C -0.135 4.135 15 O -0.085 6.085 16 C 0.011 3.989 17 C -0.002 4.002 18 C -0.101 4.101 19 C -0.131 4.131 20 C -0.050 4.050 21 Cl -0.039 7.039 22 C -0.128 4.128 23 C -0.076 4.076 24 N -0.157 5.157 25 H 0.089 0.911 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.237 0.763 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 16.889 -16.106 3.171 23.552 hybrid contribution 0.541 0.674 -0.688 1.105 sum 17.430 -15.433 2.483 23.412 Atomic orbital electron populations 1.69607 1.05712 1.28290 1.48132 1.24541 0.94998 0.98618 0.95748 0.86214 0.80305 0.81569 0.78803 1.19952 1.20839 1.18390 1.20621 0.76138 0.96900 1.51796 0.87429 1.83500 1.23976 1.31187 1.77803 1.22549 0.89936 0.82854 0.79062 1.90644 1.66615 1.36143 1.47993 1.19412 0.91923 0.89504 1.05788 1.21147 0.98596 0.96624 0.94082 1.24836 1.05078 0.80811 1.02748 1.84448 1.56498 1.28705 1.38837 1.23607 0.93404 0.95020 0.86879 1.17333 1.00200 0.87410 0.95281 1.21174 0.98385 0.90856 0.99644 1.20921 0.99157 0.98620 0.94427 1.21139 1.00431 0.87863 0.95603 1.98382 1.96665 1.32037 1.76813 1.21038 0.99987 0.90692 1.01091 1.21263 0.95415 0.98457 0.92463 1.70568 1.19964 0.98200 1.26928 0.91116 0.87003 0.87035 0.76265 0.84188 0.84221 0.83911 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.33 13.96 55.48 0.77 -25.56 16 2 C 0.06 1.85 5.49 -17.53 -0.10 1.76 16 3 Si 0.91 21.37 28.62 -169.99 -4.86 16.51 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.38 -11.39 10.10 30.93 0.31 -11.08 16 8 H 0.11 3.60 7.09 -52.49 -0.37 3.22 16 9 O -0.26 -6.72 8.58 -20.72 -0.18 -6.90 16 10 C 0.41 9.70 7.90 36.00 0.28 9.98 16 11 O -0.52 -14.20 14.80 -19.06 -0.28 -14.48 16 12 C -0.03 -0.45 6.38 -29.04 -0.19 -0.64 16 13 C 0.02 0.28 5.88 -82.87 -0.49 -0.21 16 14 C -0.06 -0.81 12.06 29.42 0.35 -0.46 16 15 O -0.20 -2.70 10.52 4.02 0.04 -2.66 16 16 C 0.21 3.26 7.90 -13.90 -0.11 3.15 16 17 C 0.00 -0.01 5.87 -104.98 -0.62 -0.63 16 18 C -0.08 -0.80 9.71 -39.19 -0.38 -1.18 16 19 C -0.11 -0.98 9.81 -39.60 -0.39 -1.37 16 20 C -0.02 -0.22 6.32 -39.40 -0.25 -0.47 16 21 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.09 16 22 C -0.11 -1.10 9.81 -39.61 -0.39 -1.49 16 23 C -0.06 -0.68 9.69 -39.20 -0.38 -1.06 16 24 N -0.43 -7.72 10.28 -7.97 -0.08 -7.80 16 25 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 28 H 0.22 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.14 1.13 7.90 -52.49 -0.41 0.72 16 30 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 31 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.15 1.97 7.83 -52.49 -0.41 1.56 16 LS Contribution 315.49 15.07 4.75 4.75 Total: -1.00 -35.89 315.49 -6.11 -42.00 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -2.44 Total: -0.10 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.33 Total: -3.68 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.69 Total: -33.35 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.42 Total: -24.04 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.86 Total: 16.51 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.89 -6.11 -42.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729779821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.096 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds