Wall clock time and date at job start Tue Mar 31 2020 09:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31435 * 1 3 3 Si 1.86803 * 120.00214 * 2 1 4 4 H 1.48494 * 109.46904 * 269.99664 * 3 2 1 5 5 H 1.48496 * 109.46835 * 29.99771 * 3 2 1 6 6 H 1.48496 * 109.47012 * 149.99651 * 3 2 1 7 7 C 1.38760 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00162 * 0.02562 * 7 2 1 9 9 O 1.34922 * 119.99701 * 180.02562 * 7 2 1 10 10 C 1.34314 * 117.00069 * 180.02562 * 9 7 2 11 11 O 1.21215 * 119.99808 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00126 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.47091 * 180.02562 * 12 10 9 14 14 C 1.34532 * 126.08216 * 124.99974 * 13 12 10 15 15 O 1.34786 * 107.27751 * 179.97438 * 14 13 12 16 16 C 1.34434 * 107.69526 * 0.02562 * 15 14 13 17 17 C 1.47806 * 125.73287 * 179.97438 * 16 15 14 18 18 C 1.39580 * 120.12678 * 0.02562 * 17 16 15 19 19 C 1.37935 * 119.86482 * 179.97438 * 18 17 16 20 20 C 1.38482 * 120.13219 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 119.86617 * 179.97438 * 20 19 18 22 22 C 1.38480 * 120.26074 * 359.97438 * 20 19 18 23 23 C 1.37928 * 120.13482 * 0.02562 * 22 20 19 24 24 N 1.31232 * 108.54288 * 0.23983 * 16 15 14 25 25 H 0.96999 * 120.00146 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47313 * 59.99914 * 12 10 9 27 27 H 1.09000 * 109.46845 * 299.99524 * 12 10 9 28 28 H 1.07996 * 126.35871 * 359.97039 * 14 13 12 29 29 H 1.07996 * 120.07021 * 359.95419 * 18 17 16 30 30 H 1.08003 * 119.93000 * 179.72215 * 19 18 17 31 31 H 1.08006 * 119.92872 * 179.97438 * 22 20 19 32 32 H 1.07998 * 120.06643 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0463 -1.4000 5 1 1.4459 2.6526 0.7000 6 1 3.5459 1.4401 0.7001 7 6 2.0081 -1.2017 0.0005 8 1 1.4681 -2.1370 0.0005 9 8 3.3573 -1.2017 0.0011 10 6 3.9671 -2.3985 0.0010 11 8 3.3069 -3.4150 0.0010 12 6 5.4720 -2.4773 0.0022 13 6 5.8993 -3.9225 0.0013 14 6 6.7227 -4.5047 -0.8892 15 8 6.8456 -5.7991 -0.5340 16 6 6.0979 -5.9937 0.5661 17 6 5.9451 -7.2729 1.2908 18 6 6.6106 -8.4153 0.8434 19 6 6.4646 -9.6061 1.5242 20 6 5.6602 -9.6693 2.6496 21 17 5.4809 -11.1717 3.5007 22 6 4.9984 -8.5389 3.0988 23 6 5.1366 -7.3426 2.4264 24 7 5.5218 -4.8587 0.8853 25 1 -0.4850 0.8400 -0.0004 26 1 5.8611 -1.9836 0.8926 27 1 5.8624 -1.9829 -0.8873 28 1 7.1970 -4.0242 -1.7321 29 1 7.2383 -8.3672 -0.0341 30 1 6.9755 -10.4918 1.1763 31 1 4.3720 -8.5944 3.9769 32 1 4.6203 -6.4615 2.7779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729779821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:16 Heat of formation + Delta-G solvation = -57.921722 kcal Electronic energy + Delta-G solvation = -21106.196230 eV Core-core repulsion = 17445.056284 eV Total energy + Delta-G solvation = -3661.139946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 307.044 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.35630 -41.07965 -40.27594 -37.57623 -37.53407 -36.05853 -34.49554 -33.74924 -32.28711 -31.65428 -29.16043 -27.27367 -24.98744 -24.19474 -22.90808 -22.20300 -21.32346 -20.12936 -18.88341 -18.63422 -17.78655 -17.68297 -17.00584 -16.77268 -16.68464 -16.44461 -15.85800 -15.25825 -14.99621 -14.64318 -14.63140 -14.56504 -14.16191 -13.91912 -13.65871 -13.10000 -12.98061 -12.85950 -12.64279 -12.35558 -12.26970 -12.10730 -11.90057 -11.84827 -11.53267 -11.10556 -10.81994 -10.52565 -10.21078 -9.24707 -8.53174 -6.40516 -0.57598 0.16787 0.65651 1.00565 1.33539 1.35471 1.52505 1.59511 1.60160 1.62470 2.29595 2.50390 2.61711 2.79526 2.93020 3.56320 3.70680 3.78655 3.89826 4.09647 4.21062 4.36850 4.44684 4.50788 4.52974 4.67668 4.78944 4.87436 4.99932 5.06380 5.17916 5.27711 5.50770 5.55067 5.91243 6.58658 6.67710 6.84600 7.61968 8.60443 Molecular weight = 307.04amu Principal moments of inertia in cm(-1) A = 0.023850 B = 0.002745 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.733982 B =10196.844365 C =11111.525964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.990 3.010 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.246 1.246 7 C -0.407 4.407 8 H 0.049 0.951 9 O -0.258 6.258 10 C 0.409 3.591 11 O -0.566 6.566 12 C -0.013 4.013 13 C -0.033 4.033 14 C -0.029 4.029 15 O -0.194 6.194 16 C 0.208 3.792 17 C -0.025 4.025 18 C -0.073 4.073 19 C -0.103 4.103 20 C -0.024 4.024 21 Cl -0.057 7.057 22 C -0.110 4.110 23 C -0.074 4.074 24 N -0.481 5.481 25 H 0.289 0.711 26 H 0.133 0.867 27 H 0.163 0.837 28 H 0.275 0.725 29 H 0.161 0.839 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.991 -15.598 1.596 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.169 1.169 7 C -0.483 4.483 8 H 0.067 0.933 9 O -0.168 6.168 10 C 0.255 3.745 11 O -0.461 6.461 12 C -0.050 4.050 13 C -0.154 4.154 14 C -0.100 4.100 15 O -0.080 6.080 16 C 0.004 3.996 17 C -0.027 4.027 18 C -0.092 4.092 19 C -0.121 4.121 20 C -0.051 4.051 21 Cl -0.028 7.028 22 C -0.129 4.129 23 C -0.094 4.094 24 N -0.210 5.210 25 H 0.098 0.902 26 H 0.151 0.849 27 H 0.180 0.820 28 H 0.290 0.710 29 H 0.179 0.821 30 H 0.188 0.812 31 H 0.173 0.827 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.215 -15.833 2.166 25.768 hybrid contribution -0.504 0.342 -0.355 0.705 sum 19.711 -15.490 1.812 25.135 Atomic orbital electron populations 1.69721 1.07832 1.30222 1.48589 1.25674 0.96019 1.03014 0.94123 0.84986 0.79028 0.75138 0.79958 1.18047 1.19406 1.16884 1.20247 0.77980 0.95475 1.54567 0.93303 1.83514 1.21705 1.32674 1.78908 1.24270 0.92990 0.81327 0.75887 1.90627 1.68531 1.37521 1.49374 1.19599 0.85414 0.90799 1.09183 1.21381 1.01358 0.96742 0.95901 1.25760 1.02486 0.79823 1.01884 1.84474 1.56030 1.29278 1.38253 1.23964 0.93172 0.95185 0.87234 1.17536 1.01716 0.87644 0.95779 1.21386 0.97708 0.90059 1.00043 1.21256 0.98246 0.99159 0.93469 1.21271 1.00078 0.87958 0.95840 1.98389 1.96602 1.31133 1.76647 1.21132 1.00175 0.90275 1.01295 1.21150 0.96267 0.98589 0.93364 1.70497 1.21771 0.99838 1.28861 0.90153 0.84890 0.81956 0.70972 0.82133 0.81201 0.82725 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.15 13.96 21.63 0.30 -56.85 16 2 C 0.01 0.63 5.49 84.88 0.47 1.10 16 3 Si 0.99 43.52 28.62 68.60 1.96 45.49 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.41 -25.63 10.10 67.94 0.69 -24.95 16 8 H 0.05 3.56 7.09 -2.91 -0.02 3.54 16 9 O -0.26 -13.79 8.58 14.82 0.13 -13.66 16 10 C 0.41 19.62 7.90 71.23 0.56 20.18 16 11 O -0.57 -32.59 14.80 20.76 0.31 -32.28 16 12 C -0.01 -0.39 6.38 29.10 0.19 -0.20 16 13 C -0.03 -1.04 5.88 41.35 0.24 -0.79 16 14 C -0.03 -0.65 12.06 66.97 0.81 0.16 16 15 O -0.19 -4.92 10.52 -8.54 -0.09 -5.01 16 16 C 0.21 6.37 7.90 87.32 0.69 7.06 16 17 C -0.03 -0.65 5.87 -20.10 -0.12 -0.77 16 18 C -0.07 -1.31 9.71 22.52 0.22 -1.09 16 19 C -0.10 -1.56 9.81 22.26 0.22 -1.34 16 20 C -0.02 -0.43 6.32 22.39 0.14 -0.28 16 21 Cl -0.06 -0.89 28.95 -2.72 -0.08 -0.97 16 22 C -0.11 -2.23 9.81 22.25 0.22 -2.02 16 23 C -0.07 -1.90 9.69 22.52 0.22 -1.68 16 24 N -0.48 -17.80 10.28 -293.18 -3.01 -20.81 16 25 H 0.29 16.05 8.31 -92.71 -0.77 15.27 16 26 H 0.13 3.48 8.14 -2.39 -0.02 3.46 16 27 H 0.16 3.24 8.11 -2.39 -0.02 3.22 16 28 H 0.27 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.16 2.18 7.90 -2.91 -0.02 2.16 16 30 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 32 H 0.13 3.79 7.83 -2.91 -0.02 3.77 16 Total: -1.00 -85.51 315.49 5.23 -80.28 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.17 Total: 8.44 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 4.54 Total: -4.63 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.71 Total: -77.66 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: 0.34 Total: -50.95 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.96 Total: 45.49 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -85.51 5.23 -80.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729779821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.361 kcal (2) G-P(sol) polarization free energy of solvation -85.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds