Wall clock time and date at job start Tue Mar 31 2020 09:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31450 * 1 3 3 Si 1.86802 * 119.99749 * 2 1 4 4 H 1.48502 * 109.46881 * 270.00016 * 3 2 1 5 5 H 1.48504 * 109.47299 * 29.99579 * 3 2 1 6 6 H 1.48497 * 109.47267 * 149.99636 * 3 2 1 7 7 C 1.38761 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.08012 * 119.99682 * 359.97438 * 7 2 1 9 9 O 1.34873 * 120.00347 * 180.02562 * 7 2 1 10 10 C 1.34820 * 117.00148 * 179.97438 * 9 7 2 11 11 O 1.21582 * 120.00407 * 0.02562 * 10 9 7 12 12 C 1.47080 * 120.00094 * 180.02562 * 10 9 7 13 13 C 1.35335 * 123.16110 * 180.02562 * 12 10 9 14 14 S 1.70939 * 108.81763 * 179.97438 * 13 12 10 15 15 C 1.70768 * 91.13965 * 0.02562 * 14 13 12 16 16 C 1.50703 * 124.70354 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47064 * 270.02261 * 16 15 14 18 18 C 1.38212 * 120.01417 * 264.72711 * 17 16 15 19 19 C 1.38223 * 120.02788 * 179.72002 * 18 17 16 20 20 C 1.38272 * 120.04558 * 0.55603 * 19 18 17 21 21 C 1.38164 * 120.02897 * 359.72169 * 20 19 18 22 22 C 1.38438 * 120.01126 * 85.00070 * 17 16 15 23 23 F 1.35104 * 120.02651 * 359.97438 * 22 17 16 24 24 N 1.28625 * 110.59049 * 0.23018 * 15 14 13 25 25 H 0.97001 * 120.00121 * 0.02562 * 1 2 3 26 26 H 1.07999 * 125.59569 * 0.02562 * 13 12 10 27 27 H 1.09002 * 109.47152 * 150.02354 * 16 15 14 28 28 H 1.09001 * 109.46980 * 30.02454 * 16 15 14 29 29 H 1.08006 * 119.98822 * 0.02562 * 18 17 16 30 30 H 1.07996 * 119.98031 * 180.29292 * 19 18 17 31 31 H 1.08003 * 119.98567 * 179.74609 * 20 19 18 32 32 H 1.08001 * 120.01872 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4458 2.6528 0.7000 6 1 3.5459 1.4403 0.7001 7 6 2.0084 -1.2017 0.0005 8 1 1.4684 -2.1371 0.0014 9 8 3.3571 -1.2016 0.0011 10 6 3.9693 -2.4029 0.0021 11 8 3.3072 -3.4226 0.0021 12 6 5.4380 -2.4798 0.0033 13 6 6.1180 -3.6499 0.0039 14 16 7.7940 -3.3137 0.0045 15 6 7.4915 -1.6330 0.0047 16 6 8.5588 -0.5691 0.0058 17 6 8.9138 -0.2152 1.4270 18 6 8.3089 0.8644 2.0425 19 6 8.6300 1.1857 3.3479 20 6 9.5652 0.4345 4.0358 21 6 10.1756 -0.6416 3.4207 22 6 9.8503 -0.9680 2.1147 23 9 10.4460 -2.0204 1.5125 24 7 6.2263 -1.4011 0.0092 25 1 -0.4850 0.8400 -0.0004 26 1 5.6746 -4.6347 0.0031 27 1 8.1880 0.3181 -0.5077 28 1 9.4447 -0.9426 -0.5078 29 1 7.5812 1.4542 1.5048 30 1 8.1533 2.0265 3.8296 31 1 9.8185 0.6890 5.0544 32 1 10.9063 -1.2279 3.9579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735558997.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:43 Heat of formation + Delta-G solvation = -52.115036 kcal Electronic energy + Delta-G solvation = -21664.983379 eV Core-core repulsion = 18018.511725 eV Total energy + Delta-G solvation = -3646.471653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 307.046 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.10659 -40.09859 -39.25707 -38.45241 -35.40524 -33.92512 -32.35704 -30.81467 -30.26254 -27.58753 -26.48134 -24.29265 -23.01503 -22.39206 -20.86025 -19.46333 -18.41132 -17.99198 -17.76354 -16.56168 -16.18417 -16.02504 -15.89903 -15.38170 -15.12750 -14.55149 -14.47012 -14.04937 -13.84858 -13.59758 -13.42596 -13.20851 -12.60017 -12.44146 -12.30139 -12.13762 -11.71223 -11.67485 -11.33954 -11.23249 -10.52085 -10.37504 -9.74947 -9.68491 -9.51132 -9.38793 -9.19673 -8.91517 -8.73938 -8.66386 -6.43269 -4.14000 0.63086 0.91237 0.99249 1.36853 1.73878 2.30092 3.22371 3.26017 3.33295 3.43946 3.91169 3.93647 4.01696 4.24950 4.39356 4.41681 4.50752 4.73851 4.95768 5.04695 5.10532 5.13647 5.30198 5.43652 5.49468 5.62612 5.80711 5.84507 5.88466 6.11466 6.20527 6.49183 6.65455 7.64164 7.69284 7.98714 8.55212 8.94561 9.64988 10.63881 Molecular weight = 307.05amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.004722 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.340634 B = 5927.658050 C = 7274.769770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.068 3.932 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.375 4.375 8 H 0.112 0.888 9 O -0.222 6.222 10 C 0.474 3.526 11 O -0.534 6.534 12 C 0.062 3.938 13 C -0.237 4.237 14 S 0.194 5.806 15 C 0.020 3.980 16 C 0.000 4.000 17 C -0.116 4.116 18 C -0.071 4.071 19 C -0.128 4.128 20 C -0.091 4.091 21 C -0.156 4.156 22 C 0.103 3.897 23 F -0.136 7.136 24 N -0.417 5.417 25 H 0.281 0.719 26 H 0.189 0.811 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.013 1.259 4.604 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.176 1.176 7 C -0.451 4.451 8 H 0.129 0.871 9 O -0.128 6.128 10 C 0.319 3.681 11 O -0.430 6.430 12 C -0.071 4.071 13 C -0.378 4.378 14 S 0.451 5.549 15 C -0.260 4.260 16 C -0.040 4.040 17 C -0.119 4.119 18 C -0.089 4.089 19 C -0.146 4.146 20 C -0.109 4.109 21 C -0.175 4.175 22 C 0.083 3.917 23 F -0.114 7.114 24 N -0.132 5.132 25 H 0.092 0.908 26 H 0.206 0.794 27 H 0.130 0.870 28 H 0.117 0.883 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 24.327 1.040 4.573 24.775 hybrid contribution -0.878 0.485 -0.051 1.004 sum 23.449 1.525 4.522 23.930 Atomic orbital electron populations 1.69613 1.05783 1.28712 1.46268 1.24567 0.95010 0.98903 0.95212 0.86210 0.80683 0.81041 0.79238 1.19708 1.20722 1.17647 1.20781 0.76218 0.97164 1.50897 0.87065 1.83655 1.23616 1.30315 1.75254 1.19170 0.85295 0.83004 0.80636 1.90714 1.65129 1.36016 1.51127 1.19669 0.93819 0.87135 1.06438 1.26510 0.97897 1.04418 1.09017 1.82707 1.03157 1.03255 1.65788 1.26798 0.94993 0.97688 1.06515 1.19072 0.94695 0.96767 0.93479 1.19697 0.98140 0.97425 0.96606 1.21109 0.97421 0.95454 0.94925 1.21270 0.98159 1.00605 0.94606 1.21051 0.95721 0.94182 0.99989 1.21109 1.02935 0.99876 0.93535 1.17559 0.95424 0.86654 0.92021 1.91491 1.82088 1.54472 1.83397 1.67008 1.01820 1.31829 1.12528 0.90822 0.79369 0.87036 0.88311 0.84362 0.85073 0.85027 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.74 13.96 55.48 0.77 -24.97 16 2 C 0.07 1.99 5.49 -17.52 -0.10 1.89 16 3 Si 0.90 22.00 28.62 -169.99 -4.86 17.13 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.25 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.37 -11.48 10.11 30.93 0.31 -11.17 16 8 H 0.11 3.70 7.09 -52.48 -0.37 3.32 16 9 O -0.22 -6.30 8.51 -21.93 -0.19 -6.49 16 10 C 0.47 12.36 7.88 34.32 0.27 12.63 16 11 O -0.53 -14.91 15.96 -19.33 -0.31 -15.22 16 12 C 0.06 1.31 6.71 -84.55 -0.57 0.74 16 13 C -0.24 -4.00 10.62 29.70 0.32 -3.68 16 14 S 0.19 2.52 22.92 -107.50 -2.46 0.05 16 15 C 0.02 0.30 6.57 -13.62 -0.09 0.21 16 16 C 0.00 0.00 5.70 -29.03 -0.17 -0.16 16 17 C -0.12 -1.32 5.12 -104.56 -0.54 -1.86 16 18 C -0.07 -0.78 9.68 -39.60 -0.38 -1.17 16 19 C -0.13 -1.21 10.05 -39.57 -0.40 -1.61 16 20 C -0.09 -0.77 10.04 -39.60 -0.40 -1.17 16 21 C -0.16 -1.43 10.03 -39.52 -0.40 -1.83 16 22 C 0.10 1.11 7.24 -39.42 -0.29 0.83 16 23 F -0.14 -1.48 16.57 2.25 0.04 -1.44 16 24 N -0.42 -8.08 10.60 -8.53 -0.09 -8.17 16 25 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.19 2.91 8.03 -52.49 -0.42 2.49 16 27 H 0.11 1.17 8.05 -51.93 -0.42 0.75 16 28 H 0.10 0.88 7.79 -51.93 -0.40 0.47 16 29 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -34.57 315.19 -7.21 -41.78 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -2.44 Total: -1.08 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.42 Total: -6.35 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.68 Total: -33.14 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.50 Total: -21.70 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.86 Total: 17.13 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.46 Total: 0.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.57 -7.21 -41.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735558997.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.334 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds