Wall clock time and date at job start Tue Mar 31 2020 09:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31450 * 1 3 3 Si 1.86802 * 119.99749 * 2 1 4 4 H 1.48502 * 109.46881 * 270.00016 * 3 2 1 5 5 H 1.48504 * 109.47299 * 29.99579 * 3 2 1 6 6 H 1.48497 * 109.47267 * 149.99636 * 3 2 1 7 7 C 1.38761 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.08012 * 119.99682 * 359.97438 * 7 2 1 9 9 O 1.34873 * 120.00347 * 180.02562 * 7 2 1 10 10 C 1.34820 * 117.00148 * 179.97438 * 9 7 2 11 11 O 1.21582 * 120.00407 * 0.02562 * 10 9 7 12 12 C 1.47080 * 120.00094 * 180.02562 * 10 9 7 13 13 C 1.35335 * 123.16110 * 180.02562 * 12 10 9 14 14 S 1.70939 * 108.81763 * 179.97438 * 13 12 10 15 15 C 1.70768 * 91.13965 * 0.02562 * 14 13 12 16 16 C 1.50703 * 124.70354 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47064 * 270.02261 * 16 15 14 18 18 C 1.38212 * 120.01417 * 264.72711 * 17 16 15 19 19 C 1.38223 * 120.02788 * 179.72002 * 18 17 16 20 20 C 1.38272 * 120.04558 * 0.55603 * 19 18 17 21 21 C 1.38164 * 120.02897 * 359.72169 * 20 19 18 22 22 C 1.38438 * 120.01126 * 85.00070 * 17 16 15 23 23 F 1.35104 * 120.02651 * 359.97438 * 22 17 16 24 24 N 1.28625 * 110.59049 * 0.23018 * 15 14 13 25 25 H 0.97001 * 120.00121 * 0.02562 * 1 2 3 26 26 H 1.07999 * 125.59569 * 0.02562 * 13 12 10 27 27 H 1.09002 * 109.47152 * 150.02354 * 16 15 14 28 28 H 1.09001 * 109.46980 * 30.02454 * 16 15 14 29 29 H 1.08006 * 119.98822 * 0.02562 * 18 17 16 30 30 H 1.07996 * 119.98031 * 180.29292 * 19 18 17 31 31 H 1.08003 * 119.98567 * 179.74609 * 20 19 18 32 32 H 1.08001 * 120.01872 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4458 2.6528 0.7000 6 1 3.5459 1.4403 0.7001 7 6 2.0084 -1.2017 0.0005 8 1 1.4684 -2.1371 0.0014 9 8 3.3571 -1.2016 0.0011 10 6 3.9693 -2.4029 0.0021 11 8 3.3072 -3.4226 0.0021 12 6 5.4380 -2.4798 0.0033 13 6 6.1180 -3.6499 0.0039 14 16 7.7940 -3.3137 0.0045 15 6 7.4915 -1.6330 0.0047 16 6 8.5588 -0.5691 0.0058 17 6 8.9138 -0.2152 1.4270 18 6 8.3089 0.8644 2.0425 19 6 8.6300 1.1857 3.3479 20 6 9.5652 0.4345 4.0358 21 6 10.1756 -0.6416 3.4207 22 6 9.8503 -0.9680 2.1147 23 9 10.4460 -2.0204 1.5125 24 7 6.2263 -1.4011 0.0092 25 1 -0.4850 0.8400 -0.0004 26 1 5.6746 -4.6347 0.0031 27 1 8.1880 0.3181 -0.5077 28 1 9.4447 -0.9426 -0.5078 29 1 7.5812 1.4542 1.5048 30 1 8.1533 2.0265 3.8296 31 1 9.8185 0.6890 5.0544 32 1 10.9063 -1.2279 3.9579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735558997.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:43 Heat of formation + Delta-G solvation = -73.865986 kcal Electronic energy + Delta-G solvation = -21665.926571 eV Core-core repulsion = 18018.511725 eV Total energy + Delta-G solvation = -3647.414845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 307.046 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.88781 -41.71593 -40.50166 -39.80000 -37.53020 -34.87720 -34.58148 -31.66433 -31.33036 -28.68054 -28.38800 -25.98864 -23.75691 -23.53559 -22.06621 -20.98847 -20.23663 -20.01840 -18.52651 -17.73054 -17.34168 -17.25949 -17.16826 -16.78182 -16.67752 -16.16309 -15.64398 -15.46983 -15.01251 -14.69054 -14.64338 -14.29039 -14.17323 -14.16214 -13.37472 -13.22917 -13.13091 -13.02185 -12.51229 -12.44821 -12.39305 -12.00659 -11.92023 -11.50739 -10.91074 -10.90743 -10.77793 -10.05873 -9.90818 -9.62886 -8.63918 -6.48364 -0.67367 0.06830 0.21216 0.26581 0.44353 0.73818 1.28118 1.34636 1.52477 2.06990 2.21537 2.29873 2.59718 2.86496 3.05647 3.27152 3.62310 3.78737 3.81274 4.06167 4.12906 4.21892 4.27294 4.39204 4.53043 4.66724 4.76959 4.96820 5.11255 5.19163 5.35141 5.39684 5.49877 5.78781 5.94920 6.23486 6.48886 6.71094 7.46425 8.48230 Molecular weight = 307.05amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.004722 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.340634 B = 5927.658050 C = 7274.769770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.025 3.975 3 Si 0.978 3.022 4 H -0.259 1.259 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.411 4.411 8 H 0.063 0.937 9 O -0.234 6.234 10 C 0.478 3.522 11 O -0.564 6.564 12 C 0.019 3.981 13 C -0.234 4.234 14 S 0.315 5.685 15 C 0.014 3.986 16 C -0.001 4.001 17 C -0.131 4.131 18 C -0.091 4.091 19 C -0.134 4.134 20 C -0.088 4.088 21 C -0.157 4.157 22 C 0.089 3.911 23 F -0.138 7.138 24 N -0.455 5.455 25 H 0.293 0.707 26 H 0.199 0.801 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.147 0.853 31 H 0.161 0.839 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.923 2.104 5.402 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.487 4.487 8 H 0.081 0.919 9 O -0.141 6.141 10 C 0.324 3.676 11 O -0.461 6.461 12 C -0.114 4.114 13 C -0.376 4.376 14 S 0.573 5.427 15 C -0.265 4.265 16 C -0.041 4.041 17 C -0.133 4.133 18 C -0.109 4.109 19 C -0.152 4.152 20 C -0.105 4.105 21 C -0.176 4.176 22 C 0.070 3.930 23 F -0.117 7.117 24 N -0.170 5.170 25 H 0.103 0.897 26 H 0.216 0.784 27 H 0.134 0.866 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.165 0.835 31 H 0.179 0.821 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 28.246 1.865 5.367 28.812 hybrid contribution -1.851 0.005 -0.251 1.868 sum 26.394 1.870 5.117 26.951 Atomic orbital electron populations 1.69683 1.07323 1.30525 1.46826 1.25500 0.95943 1.02478 0.93768 0.85155 0.79030 0.76062 0.80027 1.18374 1.18009 1.17987 1.20469 0.77424 0.96230 1.54586 0.91902 1.83670 1.22189 1.31443 1.76808 1.20239 0.87673 0.81958 0.77694 1.90670 1.66783 1.36743 1.51870 1.19153 0.91200 0.89395 1.11650 1.26914 1.01029 1.03806 1.05842 1.82338 0.98084 1.00129 1.62109 1.27438 0.94343 1.00292 1.04441 1.19280 0.94412 0.96214 0.94230 1.19716 0.98928 0.98032 0.96629 1.21234 0.97854 0.95917 0.95887 1.21560 0.98328 1.01213 0.94136 1.21427 0.94625 0.93330 1.01154 1.21449 1.03018 1.00058 0.93032 1.17720 0.95729 0.86828 0.92726 1.91477 1.82129 1.54527 1.83528 1.66925 1.03531 1.31963 1.14620 0.89687 0.78426 0.86578 0.85556 0.85050 0.83506 0.82104 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.64 13.96 21.63 0.30 -55.34 16 2 C 0.02 1.49 5.49 84.88 0.47 1.96 16 3 Si 0.98 46.03 28.62 68.60 1.96 47.99 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.41 -26.76 10.11 67.95 0.69 -26.07 16 8 H 0.06 4.56 7.09 -2.90 -0.02 4.54 16 9 O -0.23 -13.92 8.51 10.25 0.09 -13.83 16 10 C 0.48 26.09 7.88 70.14 0.55 26.64 16 11 O -0.56 -33.30 15.96 19.57 0.31 -32.98 16 12 C 0.02 0.81 6.71 40.52 0.27 1.08 16 13 C -0.23 -7.55 10.62 67.15 0.71 -6.83 16 14 S 0.31 7.06 22.92 -56.49 -1.29 5.77 16 15 C 0.01 0.40 6.57 88.58 0.58 0.98 16 16 C 0.00 -0.02 5.70 29.10 0.17 0.14 16 17 C -0.13 -2.69 5.12 -19.82 -0.10 -2.79 16 18 C -0.09 -1.88 9.68 22.26 0.22 -1.66 16 19 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 20 C -0.09 -1.20 10.04 22.26 0.22 -0.97 16 21 C -0.16 -2.36 10.03 22.31 0.22 -2.14 16 22 C 0.09 1.67 7.24 22.38 0.16 1.83 16 23 F -0.14 -2.51 16.57 44.97 0.75 -1.77 16 24 N -0.45 -17.41 10.60 -180.90 -1.92 -19.33 16 25 H 0.29 16.10 8.31 -92.71 -0.77 15.33 16 26 H 0.20 5.86 8.03 -2.91 -0.02 5.83 16 27 H 0.12 2.24 8.05 -2.39 -0.02 2.22 16 28 H 0.13 1.79 7.79 -2.39 -0.02 1.77 16 29 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 30 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 32 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -80.46 315.19 5.76 -74.70 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.17 Total: 4.64 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.39 Total: -9.85 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.61 Total: -74.67 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: 0.40 Total: -46.81 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.75 Total: -1.77 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.96 Total: 47.99 kcal Atomic # 16 Polarization: 7.06 SS G_CDS: -1.29 Total: 5.77 kcal Total: -80.46 5.76 -74.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735558997.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.837 kcal (2) G-P(sol) polarization free energy of solvation -80.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds