Wall clock time and date at job start Tue Mar 31 2020 09:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38345 * 119.87225 * 2 1 4 4 C 1.37999 * 120.15522 * 180.02562 * 3 2 1 5 5 C 1.39349 * 119.91978 * 0.29423 * 4 3 2 6 6 C 1.48398 * 120.11926 * 179.73074 * 5 4 3 7 7 C 1.39715 * 120.40861 * 309.99430 * 6 5 4 8 8 N 1.31915 * 121.14897 * 179.97438 * 7 6 5 9 9 C 1.31524 * 122.12002 * 0.02562 * 8 7 6 10 10 C 1.40767 * 120.66723 * 359.97438 * 9 8 7 11 11 C 1.41440 * 120.60066 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00401 * 335.75281 * 11 10 9 13 13 C 1.39935 * 119.99483 * 155.75960 * 11 10 9 14 14 N 1.30826 * 120.00516 * 343.22395 * 13 11 10 15 15 Si 1.86803 * 119.99796 * 163.22818 * 13 11 10 16 16 H 1.48504 * 109.47175 * 89.99970 * 15 13 11 17 17 H 1.48505 * 109.47132 * 209.99748 * 15 13 11 18 18 H 1.48503 * 109.47190 * 329.99844 * 15 13 11 19 19 C 1.39140 * 120.41287 * 129.72802 * 6 5 4 20 20 C 1.39393 * 119.75506 * 359.47230 * 5 4 3 21 21 Cl 1.73602 * 120.07889 * 180.25622 * 20 5 4 22 22 C 1.38286 * 119.84329 * 0.48545 * 20 5 4 23 23 Cl 1.73595 * 119.95840 * 179.76521 * 22 20 5 24 24 H 1.08999 * 109.47282 * 90.00254 * 1 2 3 25 25 H 1.09000 * 109.46736 * 210.00072 * 1 2 3 26 26 H 1.08996 * 109.47648 * 329.99825 * 1 2 3 27 27 H 1.07991 * 119.92169 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.03988 * 180.02562 * 4 3 2 29 29 H 1.07999 * 119.42817 * 0.02562 * 7 6 5 30 30 H 1.08002 * 119.66445 * 180.02562 * 9 8 7 31 31 H 0.96995 * 120.00673 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.95140 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1996 0.0000 4 6 3.5760 1.2065 -0.0005 5 6 4.2770 0.0021 -0.0073 6 6 5.7610 0.0043 -0.0139 7 6 6.4629 0.7826 -0.9379 8 7 7.7819 0.7959 -0.9565 9 6 8.5003 0.0844 -0.1154 10 6 7.8783 -0.7293 0.8504 11 6 8.6523 -1.4935 1.7545 12 1 9.6611 -1.7786 1.4948 13 6 8.1109 -1.8801 2.9856 14 7 7.0429 -1.2820 3.4474 15 14 8.9132 -3.2502 3.9697 16 1 9.9337 -2.6729 4.8812 17 1 7.8795 -3.9569 4.7682 18 1 9.5642 -4.2101 3.0423 19 6 6.4706 -0.7643 0.9035 20 6 3.5792 -1.2045 -0.0023 21 17 4.4441 -2.7098 -0.0039 22 6 2.1964 -1.1998 -0.0009 23 17 1.3243 -2.7008 -0.0009 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6527 2.1329 0.0004 28 1 4.1120 2.1440 -0.0001 29 1 5.9162 1.3844 -1.6487 30 1 9.5784 0.1254 -0.1657 31 1 6.6678 -1.5498 4.3008 32 1 5.9572 -1.3728 1.6333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245093004.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:32 Heat of formation + Delta-G solvation = 22.024396 kcal Electronic energy + Delta-G solvation = -19771.963319 eV Core-core repulsion = 16554.999261 eV Total energy + Delta-G solvation = -3216.964057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 307.023 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.56301 -38.11851 -36.37383 -36.10766 -34.15966 -33.32845 -30.59398 -30.34130 -29.98970 -26.30970 -25.67752 -22.82227 -22.21729 -21.51156 -20.40887 -17.58569 -16.29978 -16.00694 -15.52917 -15.46368 -15.15157 -14.50593 -14.13537 -13.96047 -13.63190 -12.83256 -12.79357 -12.57660 -12.29464 -11.99300 -11.65948 -11.64028 -11.48620 -11.44076 -11.31957 -11.15072 -10.88922 -10.76187 -10.62634 -10.34533 -9.92036 -9.42747 -8.83759 -8.50033 -8.23925 -7.87033 -7.51800 -6.90537 -4.54228 1.16637 1.20879 2.08111 2.50223 2.59138 2.84318 3.00319 3.03840 3.14937 3.70034 3.82010 4.51650 4.71888 4.92214 5.18602 5.22078 5.42902 5.52165 5.54401 5.65430 5.74484 5.92446 6.04109 6.15457 6.35856 6.44518 6.49349 6.70341 6.81388 6.89956 7.02475 7.13283 7.57457 7.78547 7.85747 8.33840 8.61602 8.63263 9.54186 10.00878 Molecular weight = 307.02amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.005457 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.355160 B = 5129.666348 C = 6128.299375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.106 4.106 4 C -0.095 4.095 5 C 0.011 3.989 6 C -0.106 4.106 7 C -0.017 4.017 8 N -0.470 5.470 9 C -0.016 4.016 10 C 0.060 3.940 11 C -0.447 4.447 12 H 0.084 0.916 13 C 0.076 3.924 14 N -0.787 5.787 15 Si 0.908 3.092 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.259 1.259 19 C -0.096 4.096 20 C -0.024 4.024 21 Cl -0.038 7.038 22 C -0.032 4.032 23 Cl -0.060 7.060 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.284 0.716 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.893 0.301 -2.574 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.125 4.125 4 C -0.113 4.113 5 C 0.009 3.991 6 C -0.109 4.109 7 C -0.175 4.175 8 N -0.176 5.176 9 C -0.176 4.176 10 C 0.056 3.944 11 C -0.477 4.477 12 H 0.102 0.898 13 C -0.144 4.144 14 N -0.412 5.412 15 Si 0.732 3.268 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.182 1.182 19 C -0.121 4.121 20 C -0.051 4.051 21 Cl -0.009 7.009 22 C -0.059 4.059 23 Cl -0.031 7.031 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.095 0.905 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.628 0.544 -2.972 12.014 hybrid contribution -0.114 -1.383 1.260 1.875 sum -11.741 -0.840 -1.712 11.895 Atomic orbital electron populations 1.20813 0.90129 1.03322 1.02702 1.19612 0.96562 0.90803 1.01641 1.20947 0.93971 0.96957 1.00586 1.21326 0.93578 0.97683 0.98732 1.18817 0.94020 0.90327 0.95964 1.19276 0.89272 1.02426 0.99877 1.21668 0.89902 1.04427 1.01533 1.66947 1.07311 1.19965 1.23416 1.22542 0.98120 0.98940 0.98042 1.18457 0.92418 0.91018 0.92551 1.19545 1.00726 1.28160 0.99256 0.89783 1.25948 0.94461 0.96007 0.97939 1.69756 1.18760 1.34423 1.18256 0.86291 0.79744 0.81092 0.79645 1.19230 1.19895 1.18241 1.21900 0.93983 0.98444 0.97821 1.20881 0.89936 0.88988 1.05329 1.98393 1.76287 1.29744 1.96443 1.20488 0.90094 0.87620 1.07721 1.98342 1.76023 1.31901 1.96865 0.90838 0.90968 0.91111 0.84850 0.84454 0.86243 0.85551 0.90453 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.61 36.01 0.35 -0.78 16 2 C -0.09 -1.15 5.89 -104.53 -0.62 -1.76 16 3 C -0.11 -1.39 9.68 -39.63 -0.38 -1.77 16 4 C -0.09 -1.50 9.52 -39.26 -0.37 -1.87 16 5 C 0.01 0.20 5.49 -104.87 -0.58 -0.37 16 6 C -0.11 -2.38 5.11 -104.83 -0.54 -2.91 16 7 C -0.02 -0.38 10.68 -16.96 -0.18 -0.57 16 8 N -0.47 -11.36 10.32 -12.28 -0.13 -11.49 16 9 C -0.02 -0.39 10.96 -16.73 -0.18 -0.57 16 10 C 0.06 1.54 5.59 -106.71 -0.60 0.94 16 11 C -0.45 -11.29 9.09 -37.73 -0.34 -11.64 16 12 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 13 C 0.08 1.81 5.19 -17.34 -0.09 1.72 16 14 N -0.79 -19.52 10.90 55.55 0.61 -18.91 16 15 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 16 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 19 C -0.10 -2.38 6.94 -38.23 -0.27 -2.65 16 20 C -0.02 -0.44 6.29 -39.13 -0.25 -0.68 16 21 Cl -0.04 -0.74 25.03 -51.86 -1.30 -2.04 16 22 C -0.03 -0.50 6.31 -39.51 -0.25 -0.75 16 23 Cl -0.06 -0.86 26.28 -51.86 -1.36 -2.22 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.73 6.89 -51.93 -0.36 0.37 16 26 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.14 1.99 8.05 -52.49 -0.42 1.57 16 29 H 0.12 2.37 8.04 -52.49 -0.42 1.95 16 30 H 0.13 2.88 8.06 -52.49 -0.42 2.46 16 31 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 32 H 0.14 3.48 5.35 -52.49 -0.28 3.20 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -27.05 306.65 -9.60 -36.65 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -2.72 Total: 4.06 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -4.29 Total: -23.66 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 0.48 Total: -30.40 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -2.66 Total: -4.26 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.05 -9.60 -36.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245093004.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.677 kcal (2) G-P(sol) polarization free energy of solvation -27.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds