Wall clock time and date at job start Tue Mar 31 2020 09:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38345 * 119.87225 * 2 1 4 4 C 1.37999 * 120.15522 * 180.02562 * 3 2 1 5 5 C 1.39349 * 119.91978 * 0.29423 * 4 3 2 6 6 C 1.48398 * 120.11926 * 179.73074 * 5 4 3 7 7 C 1.39715 * 120.40861 * 309.99430 * 6 5 4 8 8 N 1.31915 * 121.14897 * 179.97438 * 7 6 5 9 9 C 1.31524 * 122.12002 * 0.02562 * 8 7 6 10 10 C 1.40767 * 120.66723 * 359.97438 * 9 8 7 11 11 C 1.41440 * 120.60066 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00401 * 335.75281 * 11 10 9 13 13 C 1.39935 * 119.99483 * 155.75960 * 11 10 9 14 14 N 1.30826 * 120.00516 * 343.22395 * 13 11 10 15 15 Si 1.86803 * 119.99796 * 163.22818 * 13 11 10 16 16 H 1.48504 * 109.47175 * 89.99970 * 15 13 11 17 17 H 1.48505 * 109.47132 * 209.99748 * 15 13 11 18 18 H 1.48503 * 109.47190 * 329.99844 * 15 13 11 19 19 C 1.39140 * 120.41287 * 129.72802 * 6 5 4 20 20 C 1.39393 * 119.75506 * 359.47230 * 5 4 3 21 21 Cl 1.73602 * 120.07889 * 180.25622 * 20 5 4 22 22 C 1.38286 * 119.84329 * 0.48545 * 20 5 4 23 23 Cl 1.73595 * 119.95840 * 179.76521 * 22 20 5 24 24 H 1.08999 * 109.47282 * 90.00254 * 1 2 3 25 25 H 1.09000 * 109.46736 * 210.00072 * 1 2 3 26 26 H 1.08996 * 109.47648 * 329.99825 * 1 2 3 27 27 H 1.07991 * 119.92169 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.03988 * 180.02562 * 4 3 2 29 29 H 1.07999 * 119.42817 * 0.02562 * 7 6 5 30 30 H 1.08002 * 119.66445 * 180.02562 * 9 8 7 31 31 H 0.96995 * 120.00673 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.95140 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1996 0.0000 4 6 3.5760 1.2065 -0.0005 5 6 4.2770 0.0021 -0.0073 6 6 5.7610 0.0043 -0.0139 7 6 6.4629 0.7826 -0.9379 8 7 7.7819 0.7959 -0.9565 9 6 8.5003 0.0844 -0.1154 10 6 7.8783 -0.7293 0.8504 11 6 8.6523 -1.4935 1.7545 12 1 9.6611 -1.7786 1.4948 13 6 8.1109 -1.8801 2.9856 14 7 7.0429 -1.2820 3.4474 15 14 8.9132 -3.2502 3.9697 16 1 9.9337 -2.6729 4.8812 17 1 7.8795 -3.9569 4.7682 18 1 9.5642 -4.2101 3.0423 19 6 6.4706 -0.7643 0.9035 20 6 3.5792 -1.2045 -0.0023 21 17 4.4441 -2.7098 -0.0039 22 6 2.1964 -1.1998 -0.0009 23 17 1.3243 -2.7008 -0.0009 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6527 2.1329 0.0004 28 1 4.1120 2.1440 -0.0001 29 1 5.9162 1.3844 -1.6487 30 1 9.5784 0.1254 -0.1657 31 1 6.6678 -1.5498 4.3008 32 1 5.9572 -1.3728 1.6333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245093004.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:31 Heat of formation + Delta-G solvation = 9.819223 kcal Electronic energy + Delta-G solvation = -19772.492575 eV Core-core repulsion = 16554.999261 eV Total energy + Delta-G solvation = -3217.493313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 307.023 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92720 -39.76783 -37.56336 -37.49782 -35.97717 -34.66860 -32.32923 -31.62965 -31.47153 -27.58469 -27.47385 -24.24365 -23.62361 -23.16813 -21.89190 -19.32001 -17.83423 -17.38857 -17.23543 -16.80849 -16.65675 -16.15501 -15.32867 -15.26654 -15.00301 -14.35649 -14.24846 -13.80404 -13.58135 -13.43181 -13.29786 -13.17677 -12.97997 -12.78787 -12.75281 -12.52122 -12.27198 -12.17331 -12.02280 -11.73624 -11.60674 -11.21121 -10.31002 -10.10359 -9.74072 -9.68675 -9.10881 -8.71206 -6.45330 -0.14016 -0.01084 0.78656 0.86951 1.05534 1.27293 1.36581 1.46628 1.52275 2.15969 2.44649 2.71102 3.51510 3.66139 3.88113 3.95459 4.14866 4.17095 4.28438 4.50643 4.63049 4.73163 4.82703 4.83316 4.90595 5.04893 5.18086 5.20845 5.22935 5.30559 5.40382 5.67759 5.77706 5.92038 6.00539 6.46518 6.75060 6.76228 7.67121 8.22509 Molecular weight = 307.02amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.005457 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.355160 B = 5129.666348 C = 6128.299375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.091 4.091 4 C -0.094 4.094 5 C -0.027 4.027 6 C -0.096 4.096 7 C -0.022 4.022 8 N -0.480 5.480 9 C -0.037 4.037 10 C 0.035 3.965 11 C -0.479 4.479 12 H 0.085 0.915 13 C 0.040 3.960 14 N -0.816 5.816 15 Si 0.977 3.023 16 H -0.257 1.257 17 H -0.268 1.268 18 H -0.258 1.258 19 C -0.113 4.113 20 C -0.041 4.041 21 Cl -0.062 7.062 22 C -0.045 4.045 23 Cl -0.050 7.050 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.180 0.820 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.134 0.866 31 H 0.291 0.709 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.354 1.161 -2.436 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.073 4.073 3 C -0.109 4.109 4 C -0.112 4.112 5 C -0.029 4.029 6 C -0.098 4.098 7 C -0.180 4.180 8 N -0.187 5.187 9 C -0.197 4.197 10 C 0.030 3.970 11 C -0.509 4.509 12 H 0.103 0.897 13 C -0.177 4.177 14 N -0.441 5.441 15 Si 0.797 3.203 16 H -0.182 1.182 17 H -0.192 1.192 18 H -0.182 1.182 19 C -0.139 4.139 20 C -0.068 4.068 21 Cl -0.033 7.033 22 C -0.072 4.072 23 Cl -0.021 7.021 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.197 0.803 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.152 0.848 31 H 0.102 0.898 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.088 1.416 -2.845 14.442 hybrid contribution 0.441 -1.555 1.141 1.979 sum -13.646 -0.140 -1.703 13.753 Atomic orbital electron populations 1.20948 0.87133 1.04665 1.04205 1.20163 0.98609 0.89871 0.98644 1.21417 0.92802 0.98631 0.98019 1.21538 0.94983 0.96701 0.97995 1.18775 0.92320 0.92096 0.99714 1.19507 0.91522 1.00549 0.98255 1.22177 0.89597 1.04458 1.01758 1.66963 1.08250 1.20067 1.23447 1.22685 0.98695 0.99674 0.98644 1.18788 0.93323 0.91621 0.93221 1.19802 1.01196 1.29542 1.00310 0.89662 1.26730 0.94851 0.97692 0.98418 1.69808 1.19851 1.35524 1.18883 0.85265 0.78961 0.77933 0.78108 1.18181 1.19195 1.18189 1.21858 0.93798 0.99616 0.98655 1.21020 0.90993 0.87907 1.06907 1.98375 1.77025 1.31203 1.96684 1.20696 0.89339 0.89135 1.08043 1.98342 1.75432 1.31534 1.96821 0.89043 0.91130 0.88363 0.80303 0.83333 0.83455 0.84828 0.89827 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.61 71.24 0.68 -1.05 16 2 C -0.07 -1.68 5.89 -19.81 -0.12 -1.79 16 3 C -0.09 -1.98 9.68 22.24 0.22 -1.77 16 4 C -0.09 -2.74 9.52 22.48 0.21 -2.53 16 5 C -0.03 -1.03 5.49 -20.02 -0.11 -1.14 16 6 C -0.10 -4.37 5.11 -20.00 -0.10 -4.47 16 7 C -0.02 -0.97 10.68 85.04 0.91 -0.06 16 8 N -0.48 -23.62 10.32 -192.77 -1.99 -25.61 16 9 C -0.04 -1.90 10.96 85.36 0.94 -0.96 16 10 C 0.03 1.86 5.59 -21.22 -0.12 1.74 16 11 C -0.48 -25.13 9.09 23.47 0.21 -24.91 16 12 H 0.09 4.26 7.90 -2.91 -0.02 4.24 16 13 C 0.04 1.94 5.19 85.25 0.44 2.38 16 14 N -0.82 -41.45 10.90 21.82 0.24 -41.21 16 15 Si 0.98 37.34 29.59 68.60 2.03 39.37 16 16 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 17 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 18 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 19 C -0.11 -5.83 6.94 23.14 0.16 -5.67 16 20 C -0.04 -1.50 6.29 22.56 0.14 -1.35 16 21 Cl -0.06 -2.48 25.03 -2.72 -0.07 -2.54 16 22 C -0.04 -1.34 6.31 22.31 0.14 -1.20 16 23 Cl -0.05 -1.37 26.28 -2.72 -0.07 -1.44 16 24 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.15 6.89 -2.39 -0.02 1.13 16 26 H 0.10 1.03 8.08 -2.39 -0.02 1.01 16 27 H 0.18 2.32 8.06 -2.92 -0.02 2.29 16 28 H 0.15 3.92 8.05 -2.91 -0.02 3.90 16 29 H 0.15 5.67 8.04 -2.91 -0.02 5.64 16 30 H 0.13 6.38 8.06 -2.91 -0.02 6.36 16 31 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 32 H 0.12 6.62 5.35 -2.91 -0.02 6.60 16 Total: -1.00 -61.00 306.65 4.91 -56.09 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.16 Total: 18.14 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 3.61 Total: -42.79 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -1.75 Total: -66.82 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Atomic # 17 Polarization: -3.84 SS G_CDS: -0.14 Total: -3.98 kcal Total: -61.00 4.91 -56.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245093004.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.904 kcal (2) G-P(sol) polarization free energy of solvation -60.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds