Wall clock time and date at job start Tue Mar 31 2020 08:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48507 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46837 * 299.99584 * 3 2 1 6 6 H 1.48494 * 109.47616 * 59.99472 * 3 2 1 7 7 C 1.40050 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00539 * 192.36338 * 7 2 1 9 9 C 1.40861 * 119.99736 * 12.35501 * 7 2 1 10 10 C 1.41116 * 120.72065 * 27.78168 * 9 7 2 11 11 C 1.36879 * 118.40029 * 179.72490 * 10 9 7 12 12 C 1.38878 * 119.80983 * 0.26823 * 11 10 9 13 13 N 1.31739 * 121.51221 * 0.02746 * 12 11 10 14 14 C 1.32624 * 121.71229 * 359.97423 * 13 12 11 15 15 C 1.47700 * 119.99707 * 179.97438 * 14 13 12 16 16 C 1.39725 * 120.16030 * 229.72956 * 15 14 13 17 17 C 1.37813 * 119.89062 * 179.97438 * 16 15 14 18 18 C 1.38614 * 120.19833 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.84389 * 180.02562 * 18 17 16 20 20 C 1.38420 * 120.31819 * 0.02562 * 18 17 16 21 21 C 1.50701 * 119.94766 * 179.97438 * 20 18 17 22 22 O 1.42908 * 109.46887 * 90.00170 * 21 20 18 23 23 C 1.38191 * 120.11023 * 359.74207 * 20 18 17 24 24 F 1.35092 * 120.10152 * 180.25605 * 23 20 18 25 25 H 0.97000 * 119.99969 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.79846 * 359.97438 * 10 9 7 27 27 H 1.07998 * 120.09964 * 180.29184 * 11 10 9 28 28 H 1.08001 * 119.24456 * 179.97438 * 12 11 10 29 29 H 1.07999 * 120.05488 * 0.02562 * 16 15 14 30 30 H 1.08001 * 119.90363 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.47051 * 209.99698 * 21 20 18 32 32 H 1.08993 * 109.47044 * 330.00612 * 21 20 18 33 33 H 0.96699 * 114.00095 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.7019 1.3465 0.0006 5 1 1.8831 2.3964 -1.2126 6 1 1.8830 2.3966 1.2123 7 6 2.0082 -1.2128 0.0005 8 1 3.0695 -1.2236 0.2008 9 6 1.3284 -2.4187 -0.2599 10 6 0.1665 -2.4328 -1.0607 11 6 -0.4531 -3.6320 -1.2878 12 6 0.0642 -4.7932 -0.7286 13 7 1.1459 -4.7729 0.0230 14 6 1.7937 -3.6450 0.2821 15 6 3.0027 -3.6660 1.1303 16 6 3.1260 -2.7743 2.1990 17 6 4.2563 -2.7990 2.9871 18 6 5.2707 -3.7061 2.7231 19 17 6.6901 -3.7296 3.7223 20 6 5.1573 -4.5932 1.6666 21 6 6.2655 -5.5754 1.3868 22 8 6.0272 -6.7822 2.1142 23 6 4.0275 -4.5829 0.8709 24 9 3.9148 -5.4522 -0.1569 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2221 -1.5200 -1.4874 27 1 -1.3414 -3.6752 -1.9005 28 1 -0.4323 -5.7344 -0.9134 29 1 2.3365 -2.0675 2.4075 30 1 4.3516 -2.1102 3.8135 31 1 6.2959 -5.7945 0.3195 32 1 7.2182 -5.1463 1.6971 33 1 6.7029 -7.4612 1.9817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222328362.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:08 Heat of formation + Delta-G solvation = -72.703935 kcal Electronic energy + Delta-G solvation = -22413.452749 eV Core-core repulsion = 18764.044588 eV Total energy + Delta-G solvation = -3649.408161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 307.052 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.85148 -40.74350 -39.73873 -37.59934 -37.44858 -36.03072 -33.65945 -32.60775 -32.16250 -30.29034 -27.59203 -27.04267 -24.71986 -23.50372 -22.78281 -21.83169 -19.31525 -18.66119 -18.50778 -17.94788 -17.67980 -17.15484 -16.56121 -16.24164 -16.12252 -15.65140 -15.28554 -15.16587 -14.65518 -14.39432 -14.24005 -14.06609 -13.88924 -13.42613 -13.23648 -13.20222 -12.97117 -12.76987 -12.44942 -12.23535 -12.17432 -11.86006 -11.61758 -11.25197 -10.99598 -10.35491 -9.99468 -9.88425 -9.84752 -9.18085 -8.71242 -6.47772 -0.17897 0.06478 0.76816 0.98211 1.05340 1.40649 1.50387 1.54860 2.16745 2.40821 2.70394 3.23269 3.38473 3.58036 3.63427 3.85246 3.90346 4.18261 4.34204 4.41956 4.45248 4.48843 4.61223 4.75172 4.84675 5.01467 5.03894 5.11184 5.17118 5.30490 5.42114 5.67798 5.79628 5.90514 5.98362 6.44246 6.68800 6.74305 6.87197 7.64842 8.19584 Molecular weight = 307.05amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.005859 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.707385 B = 4777.651167 C = 6377.853894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.042 3.958 3 Si 0.978 3.022 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.454 4.454 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.149 4.149 11 C -0.144 4.144 12 C -0.040 4.040 13 N -0.467 5.467 14 C -0.015 4.015 15 C -0.029 4.029 16 C -0.056 4.056 17 C -0.116 4.116 18 C -0.006 4.006 19 Cl -0.041 7.041 20 C -0.133 4.133 21 C 0.124 3.876 22 O -0.578 6.578 23 C 0.111 3.889 24 F -0.138 7.138 25 H 0.295 0.705 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.169 0.831 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.349 -1.415 4.063 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.176 4.176 3 Si 0.798 3.202 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.483 4.483 8 H 0.104 0.896 9 C 0.059 3.941 10 C -0.176 4.176 11 C -0.164 4.164 12 C -0.201 4.201 13 N -0.175 5.175 14 C -0.152 4.152 15 C -0.031 4.031 16 C -0.075 4.075 17 C -0.134 4.134 18 C -0.033 4.033 19 Cl -0.012 7.012 20 C -0.135 4.135 21 C 0.046 3.954 22 O -0.387 6.387 23 C 0.091 3.909 24 F -0.116 7.116 25 H 0.106 0.894 26 H 0.140 0.860 27 H 0.150 0.850 28 H 0.167 0.833 29 H 0.159 0.841 30 H 0.187 0.813 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 10.051 -1.753 4.660 11.216 hybrid contribution -0.091 0.863 -1.017 1.337 sum 9.960 -0.890 3.643 10.643 Atomic orbital electron populations 1.69785 1.09003 1.31288 1.33454 1.26769 0.95464 1.04342 0.91008 0.85185 0.79656 0.76051 0.79272 1.17880 1.19005 1.18484 1.19722 0.96713 0.90589 1.41239 0.89607 1.18653 0.92584 0.93181 0.89681 1.21511 0.98456 0.97496 1.00091 1.21760 1.00405 0.93650 1.00560 1.22211 0.96510 0.98128 1.03289 1.67111 1.07611 1.29976 1.12795 1.19609 0.99747 0.90026 1.05860 1.18734 0.92391 0.95804 0.96165 1.21232 0.98000 0.96642 0.91640 1.21219 0.91666 0.99230 1.01319 1.20545 0.91032 0.98234 0.93519 1.98335 1.37568 1.97974 1.67325 1.19481 0.96493 1.00510 0.97008 1.20811 0.94518 0.84136 0.95897 1.86537 1.54391 1.26375 1.71399 1.17671 0.94603 0.90823 0.87847 1.91425 1.96119 1.67488 1.56599 0.89403 0.86017 0.84988 0.83308 0.84105 0.81322 0.92224 0.89624 0.74884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.00 10.90 21.85 0.24 -37.76 16 2 C 0.04 1.88 5.25 85.29 0.45 2.32 16 3 Si 0.98 34.15 29.58 68.60 2.03 36.18 16 4 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 5 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 6 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 7 C -0.45 -22.07 7.08 23.35 0.17 -21.90 16 8 H 0.09 4.08 6.71 -2.91 -0.02 4.06 16 9 C 0.06 3.29 5.56 -21.02 -0.12 3.17 16 10 C -0.15 -7.48 8.72 22.66 0.20 -7.28 16 11 C -0.14 -6.48 10.03 22.10 0.22 -6.26 16 12 C -0.04 -1.86 11.16 84.86 0.95 -0.91 16 13 N -0.47 -23.88 9.80 -182.96 -1.79 -25.68 16 14 C -0.02 -0.77 6.13 42.44 0.26 -0.51 16 15 C -0.03 -1.31 5.07 -20.01 -0.10 -1.41 16 16 C -0.06 -2.17 8.02 22.53 0.18 -1.99 16 17 C -0.12 -3.63 9.81 22.26 0.22 -3.41 16 18 C -0.01 -0.19 6.32 22.40 0.14 -0.05 16 19 Cl -0.04 -1.01 27.27 -2.72 -0.07 -1.08 16 20 C -0.13 -4.61 5.51 -19.83 -0.11 -4.72 16 21 C 0.12 3.38 6.58 71.24 0.47 3.85 16 22 O -0.58 -15.45 13.64 -148.98 -2.03 -17.48 16 23 C 0.11 4.69 7.19 22.67 0.16 4.85 16 24 F -0.14 -6.21 15.67 44.97 0.70 -5.51 16 25 H 0.29 12.37 8.29 -92.71 -0.77 11.60 16 26 H 0.12 6.14 6.31 -2.91 -0.02 6.12 16 27 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 28 H 0.15 5.86 8.06 -2.91 -0.02 5.84 16 29 H 0.14 5.63 7.30 -2.91 -0.02 5.61 16 30 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16 31 H 0.06 1.59 7.64 -2.39 -0.02 1.57 16 32 H 0.09 1.89 6.89 -2.39 -0.02 1.88 16 33 H 0.40 5.99 9.12 -74.06 -0.68 5.31 16 Total: -1.00 -61.67 307.05 2.67 -59.00 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.51 Total: 26.57 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 3.09 Total: -34.25 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -1.56 Total: -63.43 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -2.03 Total: -17.48 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.70 Total: -5.51 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.03 Total: 36.18 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.08 kcal Total: -61.67 2.67 -59.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222328362.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.704 kcal (2) G-P(sol) polarization free energy of solvation -61.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds