Wall clock time and date at job start Tue Mar 31 2020 08:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 120.00415 * 2 1 4 4 H 1.48500 * 109.46943 * 240.00256 * 3 2 1 5 5 H 1.48504 * 109.46766 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47409 * 119.99580 * 3 2 1 7 7 C 1.39945 * 119.99465 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99785 * 197.84839 * 7 2 1 9 9 C 1.41396 * 120.00701 * 17.84373 * 7 2 1 10 10 C 1.40715 * 120.24738 * 204.38689 * 9 7 2 11 11 C 1.37614 * 119.74252 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25213 * 0.02562 * 11 10 9 13 13 S 1.76200 * 119.75342 * 179.97438 * 12 11 10 14 14 O 1.42107 * 106.40059 * 336.46214 * 13 12 11 15 15 O 1.42096 * 106.40576 * 203.54356 * 13 12 11 16 16 N 1.65603 * 107.21724 * 89.99645 * 13 12 11 17 17 C 1.46497 * 119.99692 * 65.00436 * 16 13 12 18 18 C 1.50703 * 109.47351 * 164.99487 * 17 16 13 19 19 C 1.39867 * 125.89326 * 94.99940 * 18 17 16 20 20 C 1.35326 * 107.91879 * 179.76385 * 19 18 17 21 21 N 1.34948 * 107.74083 * 0.42321 * 20 19 18 22 22 H 0.97006 * 126.03312 * 179.84544 * 21 20 19 23 23 N 1.30830 * 125.90131 * 275.03033 * 18 17 16 24 24 C 1.38634 * 120.50004 * 0.25660 * 12 11 10 25 25 C 1.37619 * 120.24960 * 359.44252 * 24 12 11 26 26 H 0.96994 * 119.99399 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.12807 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.87429 * 180.02562 * 11 10 9 29 29 H 0.96998 * 120.00413 * 244.99997 * 16 13 12 30 30 H 1.09004 * 109.47479 * 44.99792 * 17 16 13 31 31 H 1.08999 * 109.47254 * 284.99874 * 17 16 13 32 32 H 1.07998 * 126.04754 * 0.02562 * 19 18 17 33 33 H 1.07993 * 126.13127 * 180.26668 * 20 19 18 34 34 H 1.08001 * 119.87644 * 179.70359 * 24 12 11 35 35 H 1.07994 * 120.13608 * 180.27578 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0490 -1.2347 0.2861 9 6 1.3520 -2.4070 -0.3763 10 6 1.8257 -3.6500 0.0825 11 6 1.1796 -4.8066 -0.2900 12 6 0.0665 -4.7502 -1.1145 13 16 -0.7502 -6.2393 -1.5839 14 8 0.2105 -7.2793 -1.4623 15 8 -1.4389 -5.9550 -2.7939 16 7 -1.9127 -6.5411 -0.4438 17 6 -3.0422 -5.6212 -0.2881 18 6 -4.1230 -6.2858 0.5251 19 6 -4.3051 -6.1594 1.9061 20 6 -5.3810 -6.9027 2.2541 21 7 -5.8570 -7.4865 1.1343 22 1 -6.6233 -8.0789 1.0812 23 7 -5.0527 -7.0811 0.0614 24 6 -0.4055 -3.5316 -1.5772 25 6 0.2210 -2.3618 -1.2125 26 1 -0.4849 0.8400 -0.0004 27 1 2.6934 -3.6963 0.7238 28 1 1.5412 -5.7617 0.0612 29 1 -1.8459 -7.3269 0.1209 30 1 -3.4358 -5.3595 -1.2704 31 1 -2.7075 -4.7178 0.2216 32 1 -3.6972 -5.5691 2.5758 33 1 -5.7848 -7.0115 3.2497 34 1 -1.2707 -3.4998 -2.2228 35 1 -0.1509 -1.4132 -1.5704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131663.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:02 Heat of formation + Delta-G solvation = -12.339341 kcal Electronic energy + Delta-G solvation = -22116.166864 eV Core-core repulsion = 18627.173070 eV Total energy + Delta-G solvation = -3488.993794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 307.078 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.08983 -39.34096 -38.14347 -36.77868 -36.45275 -35.76353 -32.33582 -32.02528 -31.24623 -30.88280 -27.58606 -27.26426 -23.27253 -22.91218 -22.39160 -21.07431 -20.35585 -19.38007 -19.05825 -18.62963 -18.09339 -17.21537 -17.12352 -15.96127 -15.80641 -15.45640 -15.16325 -15.11787 -14.86807 -14.41083 -14.37484 -14.05339 -13.92229 -13.60699 -13.47540 -13.09385 -12.99998 -12.87840 -12.85833 -12.75421 -12.55174 -11.98733 -11.70005 -11.50561 -11.31111 -11.18654 -10.56505 -10.40925 -9.75325 -9.67116 -9.50486 -8.83847 -6.61193 -0.33074 0.52227 0.93875 1.10709 1.38549 1.47018 1.52170 1.71080 2.02094 2.14127 2.37440 2.60099 2.96007 3.53654 3.57264 3.68785 3.98443 4.30725 4.36222 4.37485 4.44556 4.76484 4.82697 4.88421 4.92313 4.99185 5.10151 5.15304 5.28179 5.56631 5.61931 5.63784 5.80708 5.96937 6.11824 6.19687 6.48617 6.52848 6.69979 6.72087 6.85073 8.10909 Molecular weight = 307.08amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.003928 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.577796 B = 7126.786575 C = 8214.597024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.037 3.963 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.467 4.467 8 H 0.091 0.909 9 C 0.112 3.888 10 C -0.257 4.257 11 C 0.000 4.000 12 C -0.793 4.793 13 S 2.728 3.272 14 O -1.000 7.000 15 O -1.003 7.003 16 N -1.105 6.105 17 C 0.199 3.801 18 C 0.056 3.944 19 C -0.282 4.282 20 C 0.078 3.922 21 N -0.466 5.466 22 H 0.453 0.547 23 N -0.319 5.319 24 C -0.020 4.020 25 C -0.206 4.206 26 H 0.299 0.701 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.422 0.578 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.225 0.775 34 H 0.117 0.883 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.005 -6.433 7.393 14.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.179 1.179 7 C -0.494 4.494 8 H 0.109 0.891 9 C 0.109 3.891 10 C -0.277 4.277 11 C -0.020 4.020 12 C -0.887 4.887 13 S 2.824 3.176 14 O -0.991 6.991 15 O -0.993 6.993 16 N -0.865 5.865 17 C 0.071 3.929 18 C -0.111 4.111 19 C -0.312 4.312 20 C -0.069 4.069 21 N -0.177 5.177 22 H 0.300 0.700 23 N -0.145 5.145 24 C -0.040 4.040 25 C -0.226 4.226 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.144 0.856 29 H 0.257 0.743 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.177 0.823 33 H 0.242 0.758 34 H 0.135 0.865 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.581 -7.227 5.521 13.952 hybrid contribution 0.423 1.102 1.292 1.750 sum -10.158 -6.125 6.813 13.679 Atomic orbital electron populations 1.69834 1.09221 1.31887 1.30583 1.26952 0.95587 1.04982 0.90786 0.85128 0.78844 0.74819 0.80351 1.18482 1.18765 1.17870 1.20212 0.98935 0.92170 1.38052 0.89124 1.18192 0.90657 0.93215 0.87041 1.21264 1.05203 0.92781 1.08439 1.20450 0.91930 0.97853 0.91777 1.29533 1.16707 1.16564 1.25895 1.00191 0.71890 0.72941 0.72537 1.93463 1.61583 1.57019 1.87029 1.93460 1.74715 1.86343 1.44777 1.55290 1.37386 1.36451 1.57402 1.19504 0.82499 0.91091 0.99782 1.22166 0.96070 0.97971 0.94926 1.21810 1.04176 1.10685 0.94497 1.23277 0.95151 0.94362 0.94155 1.46441 1.26942 1.39676 1.04641 0.69968 1.77277 1.07038 1.18259 1.11937 1.20466 0.97010 0.91672 0.94821 1.21348 1.00963 0.97095 1.03188 0.89013 0.87096 0.85646 0.74285 0.89956 0.88846 0.82273 0.75846 0.86550 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.38 10.95 21.83 0.24 -37.14 16 2 C 0.04 1.68 5.14 85.26 0.44 2.11 16 3 Si 0.99 34.14 29.60 68.60 2.03 36.17 16 4 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 5 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 6 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 7 C -0.47 -23.09 9.05 23.46 0.21 -22.88 16 8 H 0.09 4.24 7.91 -2.91 -0.02 4.21 16 9 C 0.11 5.77 5.58 -21.29 -0.12 5.65 16 10 C -0.26 -12.15 9.80 22.73 0.22 -11.93 16 11 C 0.00 -0.01 9.49 22.22 0.21 0.20 16 12 C -0.79 -34.46 5.97 22.46 0.13 -34.32 16 13 S 2.73 104.56 5.73 -56.49 -0.32 104.23 16 14 O -1.00 -41.67 17.26 -128.00 -2.21 -43.88 16 15 O -1.00 -43.22 16.72 -128.00 -2.14 -45.36 16 16 N -1.11 -34.00 5.99 -190.79 -1.14 -35.15 16 17 C 0.20 5.90 6.78 85.63 0.58 6.48 16 18 C 0.06 1.49 6.61 43.10 0.29 1.77 16 19 C -0.28 -5.88 10.74 21.99 0.24 -5.64 16 20 C 0.08 1.10 11.99 83.54 1.00 2.10 16 21 N -0.47 -7.83 7.36 -57.59 -0.42 -8.25 16 22 H 0.45 4.24 8.96 -213.32 -1.91 2.33 16 23 N -0.32 -8.54 12.70 -47.39 -0.60 -9.14 16 24 C -0.02 -0.91 9.49 22.22 0.21 -0.70 16 25 C -0.21 -10.41 8.70 22.73 0.20 -10.21 16 26 H 0.30 12.53 8.30 -92.71 -0.77 11.77 16 27 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 28 H 0.13 4.89 7.60 -2.91 -0.02 4.87 16 29 H 0.42 11.26 8.64 -96.74 -0.84 10.42 16 30 H 0.08 2.56 7.75 -2.38 -0.02 2.54 16 31 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 33 H 0.23 0.83 8.06 -2.91 -0.02 0.80 16 34 H 0.12 4.96 7.59 -2.91 -0.02 4.94 16 35 H 0.11 5.76 6.16 -2.91 -0.02 5.74 16 Total: -1.00 -69.16 322.19 -2.55 -71.71 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: -1.59 Total: 34.19 kcal Atomic # 6 Polarization: -70.99 SS G_CDS: 3.61 Total: -67.37 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -1.93 Total: -89.68 kcal Atomic # 8 Polarization: -84.89 SS G_CDS: -4.35 Total: -89.24 kcal Atomic # 14 Polarization: 34.14 SS G_CDS: 2.03 Total: 36.17 kcal Atomic # 16 Polarization: 104.56 SS G_CDS: -0.32 Total: 104.23 kcal Total: -69.16 -2.55 -71.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131663.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.373 kcal (2) G-P(sol) polarization free energy of solvation -69.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds