Wall clock time and date at job start Tue Mar 31 2020 08:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 O 1.42897 * 109.44911 * 181.24472 * 12 11 10 14 14 C 1.34977 * 117.00401 * 89.79065 * 13 12 11 15 15 O 1.21697 * 119.99766 * 359.97438 * 14 13 12 16 16 C 1.41400 * 120.00402 * 179.97438 * 14 13 12 17 17 C 1.35369 * 120.00307 * 179.97438 * 16 14 13 18 18 C 1.46632 * 120.00241 * 179.97438 * 17 16 14 19 19 C 1.44543 * 123.50648 * 179.73227 * 18 17 16 20 20 C 1.32723 * 113.09351 * 179.76665 * 19 18 17 21 21 S 1.75493 * 110.65022 * 0.48837 * 20 19 18 22 22 C 1.36342 * 123.50570 * 0.03206 * 18 17 16 23 23 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 24 24 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 25 25 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 27 27 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 28 28 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 29 29 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 30 30 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 31 31 H 1.08002 * 119.99696 * 0.02562 * 16 14 13 32 32 H 1.08002 * 119.99996 * 0.02562 * 17 16 14 33 33 H 1.08000 * 123.45568 * 0.02562 * 19 18 17 34 34 H 1.07998 * 124.67552 * 180.19686 * 20 19 18 35 35 H 1.08004 * 124.60945 * 359.97438 * 22 18 17 36 36 H 1.09002 * 109.49848 * 178.74812 * 23 12 11 37 37 H 1.08999 * 109.49849 * 58.64620 * 23 12 11 38 38 H 1.09004 * 109.59094 * 246.19900 * 24 9 7 39 39 H 1.09001 * 109.59077 * 6.49172 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 8 6.1555 -2.6413 -3.1124 14 6 7.2445 -2.0555 -3.6534 15 8 7.6502 -0.9976 -3.2093 16 6 7.9142 -2.6710 -4.7361 17 6 9.0061 -2.0833 -5.2789 18 6 9.7008 -2.7219 -6.4013 19 6 10.8684 -2.1592 -7.0411 20 6 11.3326 -2.9113 -8.0313 21 16 10.3437 -4.3468 -8.2342 22 6 9.3091 -3.9052 -6.9538 23 6 4.8755 -2.9898 -1.0921 24 6 4.2351 -2.2628 0.0946 25 1 -0.4850 0.8401 0.0004 26 1 2.9908 0.3501 -1.7559 27 1 4.5579 0.3822 -0.9097 28 1 3.7035 -1.5726 -3.0945 29 1 4.9277 -0.2876 -3.2372 30 1 6.2781 -1.3980 -1.4672 31 1 7.5539 -3.6098 -5.1304 32 1 9.3661 -1.1444 -4.8849 33 1 11.3195 -1.2249 -6.7414 34 1 12.1968 -2.6705 -8.6326 35 1 8.4590 -4.4843 -6.6245 36 1 5.6320 -3.6849 -0.7278 37 1 4.1091 -3.5392 -1.6388 38 1 5.0116 -1.7874 0.6940 39 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770786456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:42 Heat of formation + Delta-G solvation = -32.338069 kcal Electronic energy + Delta-G solvation = -22027.897896 eV Core-core repulsion = 18641.577236 eV Total energy + Delta-G solvation = -3386.320660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.103 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82323 -39.52521 -38.79820 -37.46763 -34.67459 -34.24198 -32.39799 -32.08790 -30.13991 -27.61062 -26.45657 -24.54591 -24.27225 -23.07790 -21.27633 -21.03572 -19.71503 -19.39250 -18.94625 -18.37533 -17.50439 -17.00735 -16.92709 -16.26717 -16.00728 -15.46987 -15.27420 -14.89388 -14.56422 -14.40926 -14.22953 -14.21621 -13.97332 -13.57965 -13.49451 -13.45708 -12.96872 -12.86343 -12.59627 -12.33174 -12.18215 -12.08743 -11.78884 -11.73338 -11.62638 -11.48733 -11.33711 -11.09111 -10.74402 -9.88125 -9.03359 -9.00072 -8.19545 -5.52327 -0.66853 0.40285 0.67541 1.03621 1.27312 1.38283 1.47036 1.56101 1.81598 2.24580 2.38353 2.99162 3.27458 3.63652 3.71453 3.76873 3.83585 3.99092 4.06513 4.19325 4.25117 4.36745 4.36975 4.56004 4.59225 4.65444 4.68512 4.73927 4.81806 4.88740 4.99947 5.02332 5.06664 5.20594 5.29060 5.36113 5.42436 5.57586 5.83152 6.10231 6.74057 6.85418 7.56561 7.97535 8.99878 Molecular weight = 307.10amu Principal moments of inertia in cm(-1) A = 0.034394 B = 0.002431 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.905282 B =11514.954546 C =11796.241841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.032 4.032 3 Si 0.939 3.061 4 H -0.278 1.278 5 H -0.307 1.307 6 H -0.263 1.263 7 C -0.248 4.248 8 H 0.061 0.939 9 N -0.620 5.620 10 C 0.127 3.873 11 C -0.140 4.140 12 C 0.101 3.899 13 O -0.346 6.346 14 C 0.496 3.504 15 O -0.550 6.550 16 C -0.226 4.226 17 C 0.051 3.949 18 C -0.132 4.132 19 C -0.123 4.123 20 C -0.235 4.235 21 S 0.210 5.790 22 C -0.226 4.226 23 C -0.117 4.117 24 C 0.145 3.855 25 H 0.262 0.738 26 H 0.056 0.944 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.137 0.863 33 H 0.163 0.837 34 H 0.191 0.809 35 H 0.183 0.817 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.266 -9.600 -18.217 33.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.227 4.227 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.235 1.235 6 H -0.187 1.187 7 C -0.378 4.378 8 H 0.078 0.922 9 N -0.345 5.345 10 C 0.001 3.999 11 C -0.179 4.179 12 C 0.046 3.954 13 O -0.263 6.263 14 C 0.346 3.654 15 O -0.444 6.444 16 C -0.247 4.247 17 C 0.030 3.970 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.369 4.369 21 S 0.477 5.523 22 C -0.363 4.363 23 C -0.156 4.156 24 C 0.021 3.979 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.174 0.826 32 H 0.154 0.846 33 H 0.180 0.820 34 H 0.208 0.792 35 H 0.200 0.800 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 26.304 -10.479 -19.071 34.138 hybrid contribution -0.502 2.446 1.380 2.853 sum 25.802 -8.033 -17.691 32.299 Atomic orbital electron populations 1.69953 1.07196 1.27219 1.55487 1.25862 0.95825 1.00705 1.00313 0.86026 0.78875 0.80808 0.77476 1.20494 1.23549 1.18740 1.18894 0.86484 0.93793 1.38586 0.92162 1.44556 1.08180 1.34545 1.47225 1.21288 0.96723 0.92071 0.89785 1.22342 0.98280 0.98734 0.98584 1.22207 0.93272 0.94027 0.85914 1.86263 1.40899 1.51677 1.47418 1.20418 0.78575 0.83079 0.83301 1.90867 1.66555 1.24123 1.62896 1.21176 0.99816 1.04783 0.98881 1.22179 0.89599 0.96379 0.88887 1.19400 0.99124 0.96493 0.99665 1.21525 0.95305 1.01866 0.96411 1.25865 1.06789 0.99579 1.04714 1.83087 1.18639 1.21784 1.28756 1.26118 1.06431 1.00953 1.02798 1.22049 1.00256 0.97246 0.96046 1.21123 0.92119 0.90787 0.93908 0.92864 0.92562 0.94961 0.91397 0.91578 0.90927 0.82556 0.84552 0.81989 0.79172 0.79980 0.88517 0.91294 0.94259 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.39 13.97 21.65 0.30 -60.08 16 2 C -0.03 -1.90 5.23 84.86 0.44 -1.45 16 3 Si 0.94 47.73 24.34 68.60 1.67 49.40 16 4 H -0.28 -13.54 6.62 99.48 0.66 -12.88 16 5 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 6 H -0.26 -12.90 6.64 99.48 0.66 -12.24 16 7 C -0.25 -14.20 10.03 84.03 0.84 -13.35 16 8 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 9 N -0.62 -29.89 2.77 -699.09 -1.94 -31.83 16 10 C 0.13 5.72 4.20 86.36 0.36 6.09 16 11 C -0.14 -5.39 5.71 30.68 0.18 -5.21 16 12 C 0.10 3.47 2.36 30.63 0.07 3.55 16 13 O -0.35 -10.78 9.75 -58.94 -0.57 -11.35 16 14 C 0.50 14.53 7.65 68.60 0.52 15.05 16 15 O -0.55 -19.15 15.34 19.19 0.29 -18.86 16 16 C -0.23 -4.75 9.39 22.39 0.21 -4.54 16 17 C 0.05 0.93 9.57 23.80 0.23 1.15 16 18 C -0.13 -1.95 5.97 -19.92 -0.12 -2.07 16 19 C -0.12 -1.43 10.38 22.70 0.24 -1.19 16 20 C -0.23 -2.03 11.11 66.65 0.74 -1.29 16 21 S 0.21 1.83 23.02 -56.49 -1.30 0.53 16 22 C -0.23 -2.75 10.26 67.38 0.69 -2.06 16 23 C -0.12 -3.79 5.73 30.67 0.18 -3.61 16 24 C 0.15 5.58 6.52 86.37 0.56 6.14 16 25 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 26 H 0.06 2.77 4.49 -2.39 -0.01 2.76 16 27 H 0.03 1.44 7.07 -2.38 -0.02 1.42 16 28 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.07 2.60 7.11 -2.39 -0.02 2.59 16 31 H 0.16 2.52 6.53 -2.91 -0.02 2.50 16 32 H 0.14 2.58 7.45 -2.91 -0.02 2.56 16 33 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 35 H 0.18 1.72 6.81 -2.91 -0.02 1.70 16 36 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 2.84 7.93 -2.39 -0.02 2.82 16 Total: -1.00 -71.32 334.25 4.56 -66.76 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.96 Total: 8.24 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 5.15 Total: -2.80 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -1.64 Total: -91.91 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.28 Total: -30.21 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.67 Total: 49.40 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.30 Total: 0.53 kcal Total: -71.32 4.56 -66.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770786456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.419 kcal (2) G-P(sol) polarization free energy of solvation -71.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds