Wall clock time and date at job start Tue Mar 31 2020 08:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36277 * 119.93681 * 2 1 4 4 C 1.40908 * 119.87360 * 180.02562 * 3 2 1 5 5 C 1.41033 * 120.11320 * 179.97438 * 4 3 2 6 6 H 1.07994 * 120.00511 * 24.02173 * 5 4 3 7 7 C 1.40021 * 119.99635 * 204.02680 * 5 4 3 8 8 N 1.30792 * 120.00287 * 16.19603 * 7 5 4 9 9 Si 1.86796 * 119.99758 * 196.19770 * 7 5 4 10 10 H 1.48506 * 109.47161 * 59.99846 * 9 7 5 11 11 H 1.48501 * 109.47033 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47434 * 299.99774 * 9 7 5 13 13 C 1.40950 * 119.76869 * 359.97438 * 4 3 2 14 14 C 1.36240 * 119.87234 * 359.72073 * 13 4 3 15 15 C 1.39912 * 119.93990 * 179.97438 * 2 1 3 16 16 C 1.47997 * 119.88047 * 359.97438 * 15 2 1 17 17 C 1.39610 * 120.56173 * 284.78154 * 16 15 2 18 18 N 1.31672 * 120.55693 * 180.30759 * 17 16 15 19 19 C 1.31954 * 121.87562 * 359.71674 * 18 17 16 20 20 C 1.38335 * 121.08500 * 0.02562 * 19 18 17 21 21 C 1.38379 * 119.31134 * 0.02562 * 20 19 18 22 22 C 1.50702 * 120.85392 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.47148 * 3.97450 * 22 21 20 24 24 F 1.39894 * 109.47235 * 243.96986 * 22 21 20 25 25 F 1.39898 * 109.46685 * 123.97063 * 22 21 20 26 26 H 1.08998 * 109.46972 * 264.71853 * 1 2 3 27 27 H 1.09000 * 109.47234 * 24.71963 * 1 2 3 28 28 H 1.08994 * 109.47273 * 144.72023 * 1 2 3 29 29 H 1.08000 * 120.06083 * 359.97438 * 3 2 1 30 30 H 0.96998 * 120.00104 * 180.02562 * 8 7 5 31 31 H 1.07994 * 120.06446 * 180.02562 * 13 4 3 32 32 H 1.07996 * 119.93739 * 180.27833 * 14 13 4 33 33 H 1.07999 * 119.71938 * 0.02562 * 17 16 15 34 34 H 1.08002 * 119.45677 * 180.02562 * 19 18 17 35 35 H 1.07995 * 120.34812 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1809 0.0000 4 6 3.5962 1.1794 -0.0005 5 6 4.3051 2.3986 -0.0011 6 1 3.8383 3.2949 0.3796 7 6 5.6143 2.4469 -0.4954 8 7 6.0702 1.4700 -1.2359 9 14 6.7097 3.9066 -0.0970 10 1 6.8776 4.0124 1.3747 11 1 8.0377 3.7173 -0.7340 12 1 6.0848 5.1503 -0.6146 13 6 4.2947 -0.0449 -0.0005 14 6 3.6048 -1.2197 0.0057 15 6 2.2053 -1.2124 0.0005 16 6 1.4613 -2.4918 0.0017 17 6 0.8398 -2.9505 1.1646 18 7 0.1830 -4.0917 1.1671 19 6 0.0800 -4.8388 0.0843 20 6 0.6632 -4.4514 -1.1088 21 6 1.3658 -3.2606 -1.1642 22 6 2.0145 -2.8048 -2.4459 23 9 1.6986 -3.7009 -3.4727 24 9 3.4024 -2.7604 -2.2760 25 9 1.5444 -1.5298 -2.7786 26 1 -0.3633 -0.0946 1.0233 27 1 -0.3634 0.9335 -0.4297 28 1 -0.3633 -0.8389 -0.5935 29 1 1.6471 2.1162 -0.0004 30 1 6.9773 1.5033 -1.5780 31 1 5.3746 -0.0516 -0.0005 32 1 4.1389 -2.1583 0.0103 33 1 0.9021 -2.3665 2.0710 34 1 -0.4685 -5.7680 0.1303 35 1 0.5712 -5.0719 -1.9879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242279607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:51 Heat of formation + Delta-G solvation = -104.346624 kcal Electronic energy + Delta-G solvation = -25368.716355 eV Core-core repulsion = 21301.972478 eV Total energy + Delta-G solvation = -4066.743877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.72383 -47.30519 -47.07682 -40.08860 -37.78217 -34.38066 -33.07927 -31.75449 -31.26151 -29.27429 -26.52244 -25.91698 -25.34659 -22.90937 -22.23646 -20.58373 -20.03128 -18.27330 -18.12264 -18.00111 -17.04071 -15.92907 -15.84676 -15.31773 -15.09299 -14.34097 -14.25935 -13.97235 -13.87182 -13.73400 -13.51847 -13.36468 -13.29860 -13.27716 -12.83311 -12.70070 -12.23745 -12.05367 -11.86048 -11.63012 -11.53138 -11.12745 -11.02962 -10.71356 -10.50530 -10.00017 -9.85762 -9.59282 -9.44744 -9.26882 -8.71126 -7.56971 -7.33533 -6.89964 -4.50350 1.02142 1.19564 2.57231 2.98536 2.99376 3.00452 3.01796 3.08631 3.78253 3.81657 4.04542 4.37234 4.43261 4.53246 4.82704 5.02530 5.08828 5.19272 5.51274 5.66651 5.83070 5.86823 5.90350 6.00077 6.19201 6.27546 6.31549 6.50110 6.72399 6.86536 6.91606 7.12508 7.23629 7.51026 7.73960 7.93555 7.96584 8.01508 8.14989 8.50123 8.73818 8.84038 10.01441 Molecular weight = 307.09amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.004820 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.553557 B = 5808.027186 C = 6391.420183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.021 4.021 3 C -0.227 4.227 4 C 0.124 3.876 5 C -0.449 4.449 6 H 0.081 0.919 7 C 0.074 3.926 8 N -0.779 5.779 9 Si 0.912 3.088 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.264 1.264 13 C -0.172 4.172 14 C -0.061 4.061 15 C -0.237 4.237 16 C 0.027 3.973 17 C 0.099 3.901 18 N -0.465 5.465 19 C 0.071 3.929 20 C -0.129 4.129 21 C -0.149 4.149 22 C 0.514 3.486 23 F -0.189 7.189 24 F -0.165 7.165 25 F -0.163 7.163 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.284 0.716 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -7.885 -0.306 10.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.021 4.021 3 C -0.247 4.247 4 C 0.121 3.879 5 C -0.477 4.477 6 H 0.099 0.901 7 C -0.146 4.146 8 N -0.403 5.403 9 Si 0.736 3.264 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.188 1.188 13 C -0.191 4.191 14 C -0.080 4.080 15 C -0.239 4.239 16 C 0.025 3.975 17 C -0.059 4.059 18 N -0.173 5.173 19 C -0.084 4.084 20 C -0.149 4.149 21 C -0.158 4.158 22 C 0.460 3.540 23 F -0.170 7.170 24 F -0.147 7.147 25 F -0.144 7.144 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.106 0.894 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.596 -8.235 0.271 10.555 hybrid contribution 1.124 0.911 -1.066 1.798 sum -5.472 -7.324 -0.795 9.177 Atomic orbital electron populations 1.20726 0.93847 1.01156 1.00655 1.18916 0.93207 0.92341 0.97642 1.20494 0.94170 0.95268 1.14742 1.17694 0.90903 0.93232 0.86072 1.19654 0.97217 0.96011 1.34866 0.90138 1.26017 0.98463 0.97572 0.92522 1.69802 1.17421 1.31185 1.21911 0.86302 0.78731 0.81347 0.80055 1.18635 1.20173 1.18831 1.21004 0.99941 0.91153 1.07000 1.20331 0.91751 0.97183 0.98718 1.17622 0.92552 0.88673 1.25043 1.19782 0.92492 0.94054 0.91149 1.23202 0.93222 0.91912 0.97592 1.67581 1.14470 1.05360 1.29870 1.22630 0.98612 0.99433 0.87773 1.21909 0.96943 0.95425 1.00585 1.20765 1.03050 0.98240 0.93774 1.18023 0.77269 0.75365 0.83384 1.93118 1.92856 1.68517 1.62531 1.93258 1.29965 1.96108 1.95324 1.93259 1.88152 1.39875 1.93136 0.92430 0.92497 0.93352 0.88689 0.90443 0.86005 0.89396 0.81872 0.82416 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 9.34 36.01 0.34 -1.53 16 2 C -0.02 -0.44 5.87 -104.70 -0.61 -1.06 16 3 C -0.23 -5.31 9.34 -39.28 -0.37 -5.68 16 4 C 0.12 3.16 5.59 -106.80 -0.60 2.56 16 5 C -0.45 -11.36 9.04 -37.85 -0.34 -11.70 16 6 H 0.08 1.94 7.90 -52.49 -0.41 1.53 16 7 C 0.07 1.78 5.18 -17.33 -0.09 1.69 16 8 N -0.78 -19.42 10.81 55.55 0.60 -18.82 16 9 Si 0.91 17.85 29.59 -169.99 -5.03 12.82 16 10 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 11 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 12 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 13 C -0.17 -4.30 8.63 -39.27 -0.34 -4.64 16 14 C -0.06 -1.39 8.01 -39.66 -0.32 -1.70 16 15 C -0.24 -4.94 3.82 -104.63 -0.40 -5.34 16 16 C 0.03 0.49 3.89 -104.73 -0.41 0.08 16 17 C 0.10 1.59 10.74 -17.11 -0.18 1.41 16 18 N -0.47 -6.98 10.35 -12.89 -0.13 -7.12 16 19 C 0.07 0.91 11.17 -17.46 -0.20 0.72 16 20 C -0.13 -1.73 9.49 -39.49 -0.37 -2.10 16 21 C -0.15 -2.49 5.43 -103.92 -0.56 -3.05 16 22 C 0.51 9.21 2.91 36.01 0.10 9.32 16 23 F -0.19 -2.97 16.09 2.25 0.04 -2.94 16 24 F -0.17 -3.27 15.06 2.25 0.03 -3.24 16 25 F -0.16 -3.26 16.38 2.25 0.04 -3.23 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 28 H 0.05 0.83 7.27 -51.93 -0.38 0.45 16 29 H 0.09 2.11 8.05 -52.49 -0.42 1.68 16 30 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 31 H 0.12 3.17 6.04 -52.49 -0.32 2.85 16 32 H 0.09 1.89 7.72 -52.49 -0.40 1.49 16 33 H 0.16 2.44 8.06 -52.49 -0.42 2.02 16 34 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.14 1.53 7.27 -52.49 -0.38 1.15 16 LS Contribution 312.90 15.07 4.72 4.72 Total: -1.00 -26.60 312.90 -7.23 -33.83 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.14 Total: 5.00 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -4.35 Total: -21.03 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.47 Total: -25.94 kcal Atomic # 9 Polarization: -9.51 SS G_CDS: 0.11 Total: -9.40 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.60 -7.23 -33.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242279607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.517 kcal (2) G-P(sol) polarization free energy of solvation -26.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds