Wall clock time and date at job start Tue Mar 31 2020 08:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36277 * 119.93681 * 2 1 4 4 C 1.40908 * 119.87360 * 180.02562 * 3 2 1 5 5 C 1.41033 * 120.11320 * 179.97438 * 4 3 2 6 6 H 1.07994 * 120.00511 * 24.02173 * 5 4 3 7 7 C 1.40021 * 119.99635 * 204.02680 * 5 4 3 8 8 N 1.30792 * 120.00287 * 16.19603 * 7 5 4 9 9 Si 1.86796 * 119.99758 * 196.19770 * 7 5 4 10 10 H 1.48506 * 109.47161 * 59.99846 * 9 7 5 11 11 H 1.48501 * 109.47033 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47434 * 299.99774 * 9 7 5 13 13 C 1.40950 * 119.76869 * 359.97438 * 4 3 2 14 14 C 1.36240 * 119.87234 * 359.72073 * 13 4 3 15 15 C 1.39912 * 119.93990 * 179.97438 * 2 1 3 16 16 C 1.47997 * 119.88047 * 359.97438 * 15 2 1 17 17 C 1.39610 * 120.56173 * 284.78154 * 16 15 2 18 18 N 1.31672 * 120.55693 * 180.30759 * 17 16 15 19 19 C 1.31954 * 121.87562 * 359.71674 * 18 17 16 20 20 C 1.38335 * 121.08500 * 0.02562 * 19 18 17 21 21 C 1.38379 * 119.31134 * 0.02562 * 20 19 18 22 22 C 1.50702 * 120.85392 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.47148 * 3.97450 * 22 21 20 24 24 F 1.39894 * 109.47235 * 243.96986 * 22 21 20 25 25 F 1.39898 * 109.46685 * 123.97063 * 22 21 20 26 26 H 1.08998 * 109.46972 * 264.71853 * 1 2 3 27 27 H 1.09000 * 109.47234 * 24.71963 * 1 2 3 28 28 H 1.08994 * 109.47273 * 144.72023 * 1 2 3 29 29 H 1.08000 * 120.06083 * 359.97438 * 3 2 1 30 30 H 0.96998 * 120.00104 * 180.02562 * 8 7 5 31 31 H 1.07994 * 120.06446 * 180.02562 * 13 4 3 32 32 H 1.07996 * 119.93739 * 180.27833 * 14 13 4 33 33 H 1.07999 * 119.71938 * 0.02562 * 17 16 15 34 34 H 1.08002 * 119.45677 * 180.02562 * 19 18 17 35 35 H 1.07995 * 120.34812 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1809 0.0000 4 6 3.5962 1.1794 -0.0005 5 6 4.3051 2.3986 -0.0011 6 1 3.8383 3.2949 0.3796 7 6 5.6143 2.4469 -0.4954 8 7 6.0702 1.4700 -1.2359 9 14 6.7097 3.9066 -0.0970 10 1 6.8776 4.0124 1.3747 11 1 8.0377 3.7173 -0.7340 12 1 6.0848 5.1503 -0.6146 13 6 4.2947 -0.0449 -0.0005 14 6 3.6048 -1.2197 0.0057 15 6 2.2053 -1.2124 0.0005 16 6 1.4613 -2.4918 0.0017 17 6 0.8398 -2.9505 1.1646 18 7 0.1830 -4.0917 1.1671 19 6 0.0800 -4.8388 0.0843 20 6 0.6632 -4.4514 -1.1088 21 6 1.3658 -3.2606 -1.1642 22 6 2.0145 -2.8048 -2.4459 23 9 1.6986 -3.7009 -3.4727 24 9 3.4024 -2.7604 -2.2760 25 9 1.5444 -1.5298 -2.7786 26 1 -0.3633 -0.0946 1.0233 27 1 -0.3634 0.9335 -0.4297 28 1 -0.3633 -0.8389 -0.5935 29 1 1.6471 2.1162 -0.0004 30 1 6.9773 1.5033 -1.5780 31 1 5.3746 -0.0516 -0.0005 32 1 4.1389 -2.1583 0.0103 33 1 0.9021 -2.3665 2.0710 34 1 -0.4685 -5.7680 0.1303 35 1 0.5712 -5.0719 -1.9879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242279607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:49 Heat of formation + Delta-G solvation = -116.343526 kcal Electronic energy + Delta-G solvation = -25369.236580 eV Core-core repulsion = 21301.972478 eV Total energy + Delta-G solvation = -4067.264102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.088 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.16387 -48.70658 -48.60326 -41.34335 -39.46991 -36.08101 -34.41135 -33.26448 -32.83956 -30.88151 -27.95381 -27.55027 -26.89515 -24.28860 -23.58151 -22.29072 -21.73010 -19.58715 -19.51943 -19.46949 -18.85407 -17.43117 -17.15809 -16.92301 -16.29018 -15.90015 -15.70507 -15.50050 -15.37613 -15.11434 -15.00704 -14.79322 -14.78318 -14.66885 -14.36205 -14.22206 -13.76556 -13.65910 -13.28547 -13.25767 -12.99830 -12.71087 -12.68945 -12.22922 -12.22235 -11.59117 -11.40045 -11.14204 -11.02722 -10.67014 -9.99170 -9.37233 -9.10187 -8.67909 -6.38593 -0.21731 0.02080 0.85198 1.17758 1.37114 1.48129 1.51247 1.61650 2.17715 2.58745 2.66187 2.68255 3.02189 3.38520 3.45502 3.63912 3.80052 3.93587 4.06011 4.28796 4.35480 4.46579 4.62936 4.68671 4.75342 4.86562 5.00294 5.05015 5.07556 5.11460 5.30458 5.45567 5.55819 5.70663 5.97245 6.10092 6.15321 6.33561 6.65600 6.85310 6.88724 7.00384 8.26285 Molecular weight = 307.09amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.004820 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.553557 B = 5808.027186 C = 6391.420183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.026 4.026 3 C -0.244 4.244 4 C 0.093 3.907 5 C -0.489 4.489 6 H 0.080 0.920 7 C 0.035 3.965 8 N -0.817 5.817 9 Si 0.984 3.016 10 H -0.258 1.258 11 H -0.268 1.268 12 H -0.258 1.258 13 C -0.196 4.196 14 C -0.067 4.067 15 C -0.216 4.216 16 C -0.003 4.003 17 C 0.101 3.899 18 N -0.472 5.472 19 C 0.091 3.909 20 C -0.117 4.117 21 C -0.155 4.155 22 C 0.509 3.491 23 F -0.174 7.174 24 F -0.182 7.182 25 F -0.180 7.180 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.290 0.710 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.206 0.794 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 -9.808 -0.066 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.026 4.026 3 C -0.263 4.263 4 C 0.091 3.909 5 C -0.517 4.517 6 H 0.098 0.902 7 C -0.182 4.182 8 N -0.442 5.442 9 Si 0.804 3.196 10 H -0.183 1.183 11 H -0.192 1.192 12 H -0.182 1.182 13 C -0.216 4.216 14 C -0.085 4.085 15 C -0.217 4.217 16 C -0.005 4.005 17 C -0.056 4.056 18 N -0.179 5.179 19 C -0.066 4.066 20 C -0.137 4.137 21 C -0.164 4.164 22 C 0.455 3.545 23 F -0.155 7.155 24 F -0.163 7.163 25 F -0.162 7.162 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.186 0.814 34 H 0.222 0.778 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.567 -10.161 0.519 13.301 hybrid contribution 1.542 1.225 -1.186 2.299 sum -7.025 -8.937 -0.667 11.387 Atomic orbital electron populations 1.20704 0.90828 1.01850 1.02213 1.19350 0.95492 0.91666 0.96125 1.20689 0.93677 0.96544 1.15431 1.18018 0.92137 0.93623 0.87149 1.19889 0.98763 0.96139 1.36922 0.90188 1.26849 0.99266 1.00363 0.91673 1.69871 1.18036 1.33242 1.23072 0.85222 0.76861 0.77684 0.79805 1.18264 1.19244 1.18229 1.20929 0.99252 0.92196 1.09179 1.20467 0.93037 0.96528 0.98488 1.17856 0.91932 0.90467 1.21486 1.19563 0.94659 0.93532 0.92764 1.23162 0.92938 0.92496 0.96986 1.67697 1.14402 1.04961 1.30872 1.23437 0.96717 0.99960 0.86441 1.22288 0.95191 0.94019 1.02192 1.20761 1.03819 0.99449 0.92419 1.18290 0.76635 0.75026 0.84561 1.93138 1.92623 1.67727 1.62033 1.93226 1.31456 1.96167 1.95481 1.93222 1.88252 1.41301 1.93390 0.90247 0.91708 0.92724 0.88284 0.89953 0.87985 0.88886 0.81419 0.77783 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.30 9.34 71.24 0.67 -2.64 16 2 C -0.03 -1.11 5.87 -19.92 -0.12 -1.22 16 3 C -0.24 -11.79 9.34 22.47 0.21 -11.58 16 4 C 0.09 5.01 5.59 -21.28 -0.12 4.89 16 5 C -0.49 -26.05 9.04 23.39 0.21 -25.84 16 6 H 0.08 4.07 7.90 -2.91 -0.02 4.05 16 7 C 0.03 1.73 5.18 85.28 0.44 2.17 16 8 N -0.82 -42.87 10.81 21.84 0.24 -42.64 16 9 Si 0.98 37.70 29.59 68.60 2.03 39.73 16 10 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 11 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 12 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 13 C -0.20 -10.40 8.63 22.47 0.19 -10.20 16 14 C -0.07 -3.13 8.01 22.22 0.18 -2.95 16 15 C -0.22 -9.01 3.82 -19.87 -0.08 -9.08 16 16 C 0.00 -0.10 3.89 -19.94 -0.08 -0.18 16 17 C 0.10 3.00 10.74 85.05 0.91 3.92 16 18 N -0.47 -12.27 10.35 -194.69 -2.01 -14.29 16 19 C 0.09 1.84 11.17 84.70 0.95 2.78 16 20 C -0.12 -2.63 9.49 22.33 0.21 -2.41 16 21 C -0.16 -4.82 5.43 -19.41 -0.11 -4.92 16 22 C 0.51 17.71 2.91 71.24 0.21 17.91 16 23 F -0.17 -5.10 16.09 44.97 0.72 -4.37 16 24 F -0.18 -7.25 15.06 44.97 0.68 -6.57 16 25 F -0.18 -7.19 16.38 44.97 0.74 -6.45 16 26 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 28 H 0.05 1.75 7.27 -2.39 -0.02 1.73 16 29 H 0.10 4.54 8.05 -2.91 -0.02 4.52 16 30 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 31 H 0.10 5.71 6.04 -2.91 -0.02 5.69 16 32 H 0.09 4.15 7.72 -2.91 -0.02 4.13 16 33 H 0.17 4.70 8.06 -2.91 -0.02 4.67 16 34 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.17 2.79 7.27 -2.91 -0.02 2.77 16 Total: -1.00 -60.91 312.90 7.22 -53.69 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 1.14 Total: 20.27 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 3.69 Total: -39.37 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -1.78 Total: -56.93 kcal Atomic # 9 Polarization: -19.54 SS G_CDS: 2.14 Total: -17.40 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -60.91 7.22 -53.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242279607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.654 kcal (2) G-P(sol) polarization free energy of solvation -60.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds