Wall clock time and date at job start Tue Mar 31 2020 09:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86798 * 119.99811 * 2 1 4 4 H 1.48497 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47088 * 300.00238 * 3 2 1 6 6 H 1.48495 * 109.47183 * 60.00220 * 3 2 1 7 7 C 1.40023 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99971 * 179.97438 * 7 2 1 9 9 C 1.41329 * 120.00109 * 359.71549 * 7 2 1 10 10 C 1.40607 * 119.78911 * 180.02562 * 9 7 2 11 11 C 1.38313 * 119.13131 * 179.73028 * 10 9 7 12 12 C 1.38690 * 118.67120 * 0.53618 * 11 10 9 13 13 C 1.39647 * 119.49094 * 359.72941 * 12 11 10 14 14 N 1.39251 * 119.57244 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00241 * 174.65935 * 14 13 12 16 16 O 1.21576 * 119.99794 * 5.14547 * 15 14 13 17 17 N 1.34777 * 119.99944 * 185.15171 * 15 14 13 18 18 C 1.46497 * 119.99542 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.46864 * 179.97438 * 18 17 15 20 20 H 1.08997 * 109.60360 * 305.33117 * 19 18 17 21 21 C 1.52941 * 109.60272 * 185.00300 * 19 18 17 22 22 C 1.53709 * 112.49070 * 209.97350 * 21 19 18 23 23 S 1.83395 * 104.96829 * 2.82147 * 22 21 19 24 24 C 1.55160 * 109.60073 * 65.46794 * 19 18 17 25 25 N 1.31931 * 120.85393 * 359.97438 * 13 12 11 26 26 H 0.96993 * 119.99919 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.43278 * 0.02562 * 10 9 7 28 28 H 1.08005 * 120.66871 * 180.23411 * 11 10 9 29 29 H 1.07994 * 120.25673 * 179.70370 * 12 11 10 30 30 H 0.97003 * 119.99583 * 354.65250 * 14 13 12 31 31 H 0.96999 * 119.99930 * 359.97438 * 17 15 14 32 32 H 1.09002 * 109.47730 * 300.00260 * 18 17 15 33 33 H 1.09004 * 109.47023 * 60.00482 * 18 17 15 34 34 H 1.08994 * 108.89018 * 330.76286 * 21 19 18 35 35 H 1.08995 * 108.88982 * 89.32007 * 21 19 18 36 36 H 1.08992 * 110.34680 * 121.69810 * 22 21 19 37 37 H 1.09002 * 110.34042 * 243.95484 * 22 21 19 38 38 H 1.08993 * 111.13039 * 279.27874 * 24 19 18 39 39 H 1.08994 * 111.12712 * 43.45953 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0877 -1.2126 -0.0010 9 6 1.3010 -2.4366 0.0050 10 6 2.0085 -3.6517 0.0050 11 6 1.3034 -4.8415 0.0161 12 6 -0.0827 -4.7935 0.0156 13 6 -0.7277 -3.5549 0.0096 14 7 -2.1193 -3.5047 0.0096 15 6 -2.7509 -2.3186 0.1125 16 8 -2.1091 -1.2860 0.1112 17 7 -4.0940 -2.2771 0.2171 18 6 -4.7804 -0.9878 0.3296 19 6 -6.2890 -1.2206 0.4334 20 1 -6.6250 -1.8235 -0.4102 21 6 -7.0175 0.1241 0.4255 22 6 -8.3322 0.0853 1.2209 23 16 -8.4088 -1.6054 1.9272 24 6 -6.6115 -1.9609 1.7584 25 7 -0.0357 -2.4317 0.0050 26 1 -0.4850 0.8400 0.0004 27 1 3.0886 -3.6558 0.0012 28 1 1.8216 -5.7890 0.0201 29 1 -0.6588 -5.7069 0.0193 30 1 -2.6341 -4.3236 -0.0646 31 1 -4.6060 -3.1010 0.2179 32 1 -4.4307 -0.4664 1.2206 33 1 -4.5662 -0.3840 -0.5523 34 1 -6.3648 0.8815 0.8595 35 1 -7.2393 0.3992 -0.6056 36 1 -8.3149 0.8285 2.0180 37 1 -9.1808 0.2582 0.5590 38 1 -6.4298 -3.0315 1.6645 39 1 -6.0478 -1.5400 2.5908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881147310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:13 Heat of formation + Delta-G solvation = 26.454173 kcal Electronic energy + Delta-G solvation = -22654.122275 eV Core-core repulsion = 19302.643789 eV Total energy + Delta-G solvation = -3351.478486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.55328 -38.02963 -36.99118 -34.13565 -33.43260 -32.96209 -30.31837 -30.06490 -28.85502 -26.87894 -25.47670 -23.82357 -21.88896 -21.14526 -20.52160 -19.71552 -18.05366 -17.30205 -16.57940 -16.36340 -16.02903 -15.07276 -14.80082 -14.52755 -14.38068 -14.19393 -13.79198 -13.62822 -13.37422 -12.96448 -12.81808 -12.43754 -12.20643 -12.01881 -11.85383 -11.78777 -11.48077 -11.15977 -10.92237 -10.90545 -10.61329 -10.45077 -10.14647 -9.89359 -9.68848 -9.13273 -9.01416 -8.51140 -7.97243 -7.93414 -7.19693 -6.92561 -6.09372 -4.37030 1.59369 2.05803 2.85129 3.14137 3.18700 3.20844 3.22285 3.28535 4.08448 4.16684 4.23481 4.35773 4.58045 4.68251 4.79012 4.94658 4.97360 5.06602 5.24755 5.37344 5.45432 5.57939 5.65912 5.88215 6.00597 6.07244 6.12443 6.49508 6.62272 6.80958 6.86886 6.93103 7.25251 7.36356 7.63912 7.75269 7.83740 8.19236 8.31728 8.66626 8.81903 9.08443 9.59269 10.29044 10.51615 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.003623 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.434132 B = 7727.341689 C = 9260.662055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.036 4.036 12 C -0.358 4.358 13 C 0.387 3.613 14 N -0.673 5.673 15 C 0.663 3.337 16 O -0.462 6.462 17 N -0.761 5.761 18 C 0.156 3.844 19 C -0.102 4.102 20 H 0.091 0.909 21 C -0.124 4.124 22 C -0.066 4.066 23 S -0.309 6.309 24 C -0.058 4.058 25 N -0.472 5.472 26 H 0.270 0.730 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.394 0.606 31 H 0.383 0.617 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.302 -0.625 0.861 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.268 5.268 2 C -0.173 4.173 3 Si 0.718 3.282 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.384 4.384 13 C 0.147 3.853 14 N -0.322 5.322 15 C 0.361 3.639 16 O -0.325 6.325 17 N -0.422 5.422 18 C 0.030 3.970 19 C -0.122 4.122 20 H 0.109 0.891 21 C -0.163 4.163 22 C -0.214 4.214 23 S -0.082 6.082 24 C -0.206 4.206 25 N -0.190 5.190 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.227 0.773 31 H 0.216 0.784 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.257 0.765 1.318 16.328 hybrid contribution 1.104 -0.391 -0.429 1.247 sum -15.152 0.375 0.889 15.183 Atomic orbital electron populations 1.70366 1.05593 1.27124 1.23669 1.26192 0.95133 1.00522 0.95418 0.86492 0.80965 0.82398 0.78308 1.18615 1.20115 1.20117 1.19608 0.94057 0.89375 1.42540 0.89960 1.18400 0.87164 0.91963 0.87898 1.21626 0.98541 0.93548 1.19242 1.20548 0.93135 0.96520 0.95835 1.20436 0.94756 0.94802 1.28448 1.18336 0.82440 0.90885 0.93634 1.42553 1.05245 1.07779 1.76587 1.16426 0.81281 0.85531 0.80643 1.91394 1.62267 1.29919 1.48954 1.45276 1.05898 1.08248 1.82730 1.21019 0.87920 0.85607 1.02495 1.22320 0.95979 0.96331 0.97607 0.89057 1.21912 0.94846 0.97672 1.01871 1.23907 1.00744 0.95096 1.01641 1.87880 1.14571 1.21111 1.84666 1.24480 0.91821 1.04239 1.00103 1.68691 1.06871 1.23140 1.20347 0.91777 0.88598 0.88636 0.89178 0.77270 0.78417 0.91541 0.91411 0.90156 0.89864 0.89126 0.88391 0.87583 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.07 8.98 55.55 0.50 -17.57 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.40 16 3 Si 0.89 19.31 29.56 -169.99 -5.02 14.28 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.43 -11.78 9.14 -37.74 -0.34 -12.13 16 8 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 9 C 0.27 7.67 6.55 -85.00 -0.56 7.12 16 10 C -0.31 -7.77 9.83 -38.66 -0.38 -8.15 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.07 9.96 -38.89 -0.39 -8.46 16 13 C 0.39 9.47 7.43 -154.98 -1.15 8.32 16 14 N -0.67 -13.18 5.39 -15.79 -0.09 -13.26 16 15 C 0.66 13.23 8.52 -86.92 -0.74 12.49 16 16 O -0.46 -11.60 12.10 5.30 0.06 -11.54 16 17 N -0.76 -10.43 5.37 -65.23 -0.35 -10.78 16 18 C 0.16 1.89 4.86 -4.04 -0.02 1.87 16 19 C -0.10 -0.88 2.58 -89.51 -0.23 -1.12 16 20 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.12 -0.94 5.86 -26.39 -0.15 -1.10 16 22 C -0.07 -0.50 7.38 37.53 0.28 -0.22 16 23 S -0.31 -3.10 23.23 -107.50 -2.50 -5.60 16 24 C -0.06 -0.53 6.49 38.30 0.25 -0.28 16 25 N -0.47 -13.35 5.74 -10.26 -0.06 -13.40 16 26 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 27 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 28 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.39 5.88 8.71 -40.82 -0.36 5.53 16 31 H 0.38 3.99 8.11 -40.82 -0.33 3.66 16 32 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.62 7.80 -51.93 -0.41 0.21 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.87 7.93 -51.93 -0.41 0.46 16 39 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -33.59 335.72 -11.60 -45.19 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.27 Total: 9.11 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -3.94 Total: -1.48 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.00 Total: -55.02 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.06 Total: -11.54 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.50 Total: -5.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.59 -11.60 -45.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.642 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds