Wall clock time and date at job start Tue Mar 31 2020 09:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99836 * 2 1 4 4 H 1.48492 * 109.47048 * 269.99691 * 3 2 1 5 5 H 1.48495 * 109.47046 * 30.00252 * 3 2 1 6 6 H 1.48504 * 109.47038 * 150.00132 * 3 2 1 7 7 C 1.38815 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00036 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.48152 * 126.40571 * 359.96985 * 9 7 2 11 11 C 1.55293 * 107.21336 * 184.85227 * 10 9 7 12 12 C 1.54255 * 101.60220 * 22.55042 * 11 10 9 13 13 H 1.08998 * 111.33130 * 78.92805 * 12 11 10 14 14 C 1.52241 * 114.70579 * 207.18823 * 12 11 10 15 15 N 1.47714 * 106.35754 * 169.60123 * 14 12 11 16 16 C 1.34779 * 119.68481 * 127.96588 * 15 14 12 17 17 O 1.21628 * 120.00066 * 353.43010 * 16 15 14 18 18 C 1.47099 * 120.00080 * 173.42714 * 16 15 14 19 19 C 1.38391 * 128.00015 * 157.33782 * 18 16 15 20 20 C 1.37574 * 111.26460 * 179.82455 * 19 18 16 21 21 N 1.29554 * 117.94776 * 0.50176 * 20 19 18 22 22 S 1.56307 * 110.38408 * 359.71542 * 21 20 19 23 23 C 1.46597 * 120.63213 * 307.94385 * 15 14 12 24 24 C 1.53951 * 110.58097 * 47.82080 * 23 15 14 25 25 C 1.45474 * 126.40183 * 180.02562 * 9 7 2 26 26 H 1.09005 * 109.27149 * 266.17830 * 25 9 7 27 27 H 0.96989 * 119.99966 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.92509 * 304.30590 * 10 9 7 29 29 H 1.09006 * 109.92006 * 65.40824 * 10 9 7 30 30 H 1.09004 * 110.95482 * 140.72729 * 11 10 9 31 31 H 1.08993 * 110.95646 * 264.45425 * 11 10 9 32 32 H 1.09000 * 110.06874 * 288.81874 * 14 12 11 33 33 H 1.09004 * 110.06514 * 50.39023 * 14 12 11 34 34 H 1.08003 * 124.36055 * 359.97438 * 19 18 16 35 35 H 1.07996 * 121.02576 * 180.19364 * 20 19 18 36 36 H 1.08995 * 109.25735 * 168.10865 * 23 15 14 37 37 H 1.09004 * 109.25056 * 287.53979 * 23 15 14 38 38 H 1.09002 * 109.87826 * 189.48943 * 24 23 15 39 39 H 1.09000 * 109.88105 * 68.41296 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1466 -2.5534 0.0006 11 6 -0.4384 -4.0735 0.1261 12 6 0.8685 -4.5886 0.7634 13 1 0.8918 -4.3910 1.8350 14 6 1.2011 -6.0404 0.4478 15 7 2.5824 -6.2631 0.9216 16 6 2.8486 -7.3016 1.7384 17 8 1.9386 -7.9784 2.1780 18 6 4.2397 -7.6166 2.0982 19 6 4.6970 -8.3154 3.2017 20 6 6.0692 -8.4133 3.1968 21 7 6.7139 -7.8597 2.2189 22 16 5.7168 -7.1829 1.2234 23 6 3.6666 -5.3657 0.5114 24 6 3.2476 -3.8948 0.6878 25 6 1.9080 -3.7211 0.0016 26 1 1.9900 -4.0787 -1.0249 27 1 -0.4849 0.8400 0.0004 28 1 -0.5802 -2.0209 0.8472 29 1 -0.5633 -2.1709 -0.9312 30 1 -1.2916 -4.2540 0.7800 31 1 -0.5987 -4.5218 -0.8543 32 1 0.5140 -6.7041 0.9726 33 1 1.1418 -6.2126 -0.6269 34 1 4.0586 -8.7322 3.9667 35 1 6.5931 -8.9314 3.9863 36 1 4.5477 -5.5642 1.1214 37 1 3.9069 -5.5478 -0.5362 38 1 3.9879 -3.2408 0.2270 39 1 3.1539 -3.6608 1.7483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036729521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:59 Heat of formation + Delta-G solvation = 51.405993 kcal Electronic energy + Delta-G solvation = -23345.475607 eV Core-core repulsion = 19995.079113 eV Total energy + Delta-G solvation = -3350.396494 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41654 -39.33331 -38.15368 -35.51979 -32.88867 -31.78549 -31.63084 -29.69764 -28.30568 -26.30260 -24.90704 -23.63555 -22.62617 -21.71466 -20.11665 -19.79996 -19.29946 -18.40584 -16.98684 -16.41337 -16.14244 -15.54233 -15.33522 -14.85650 -14.52694 -14.36421 -14.03291 -13.71212 -13.55595 -13.21860 -13.05046 -12.70638 -12.54921 -11.75360 -11.69015 -11.54526 -11.42524 -11.01940 -10.86184 -10.80306 -10.71499 -10.25390 -10.14803 -10.01410 -9.93043 -9.86272 -9.68449 -9.54598 -8.88050 -8.67558 -8.65828 -6.88198 -5.75274 -3.08861 0.11141 1.02918 1.67002 2.02174 2.75864 3.00257 3.37278 3.42308 3.44361 4.23263 4.45483 4.73738 4.78392 4.84734 4.98686 5.13427 5.26094 5.36084 5.45157 5.49413 5.51909 5.58383 5.72113 5.80292 5.93864 6.05215 6.09551 6.15678 6.24908 6.29145 6.39272 6.55049 6.57752 6.73231 6.99833 7.25467 7.51444 7.57578 7.77676 7.97229 8.20435 9.15372 9.78952 10.46480 11.37145 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.003998 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.963106 B = 7002.495189 C = 8033.706011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.126 4.126 13 H 0.081 0.919 14 C 0.129 3.871 15 N -0.599 5.599 16 C 0.593 3.407 17 O -0.529 6.529 18 C -0.267 4.267 19 C -0.115 4.115 20 C 0.059 3.941 21 N -0.538 5.538 22 S 0.439 5.561 23 C 0.101 3.899 24 C -0.127 4.127 25 C 0.167 3.833 26 H 0.022 0.978 27 H 0.252 0.748 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.174 0.826 35 H 0.180 0.820 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.252 -15.496 2.543 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.146 4.146 13 H 0.100 0.900 14 C 0.008 3.992 15 N -0.331 5.331 16 C 0.379 3.621 17 O -0.407 6.407 18 C -0.401 4.401 19 C -0.150 4.150 20 C -0.133 4.133 21 N -0.367 5.367 22 S 0.595 5.405 23 C -0.024 4.024 24 C -0.166 4.166 25 C 0.059 3.941 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.191 0.809 35 H 0.197 0.803 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.182 -14.808 1.301 17.472 hybrid contribution -0.349 0.184 1.520 1.570 sum 8.833 -14.624 2.821 17.316 Atomic orbital electron populations 1.69934 1.04907 1.25096 1.56840 1.24791 0.95665 0.97641 1.02197 0.86159 0.78607 0.83657 0.77574 1.21600 1.21708 1.20705 1.18989 0.90358 0.82276 1.43984 0.90336 1.44195 1.01655 0.99383 1.86607 1.21532 0.83860 0.88330 1.01068 1.22802 0.95631 0.99633 0.99333 1.22750 0.97959 0.93026 1.00865 0.90016 1.21710 0.80612 0.97552 0.99361 1.48162 1.10524 1.26789 1.47632 1.16829 0.85733 0.80863 0.78696 1.90801 1.45429 1.51072 1.53401 1.26929 1.00440 1.09243 1.03490 1.22098 0.95108 0.99173 0.98659 1.22225 0.91453 1.01375 0.98290 1.72125 1.35930 1.17637 1.10976 1.82073 0.87508 1.43979 1.26951 1.22160 0.88327 0.91413 1.00533 1.21876 0.99795 0.92522 1.02394 1.20636 0.90878 0.87424 0.95199 0.96102 0.93721 0.92713 0.94290 0.91922 0.92221 0.88836 0.90731 0.80910 0.80308 0.90889 0.90515 0.90023 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 10.43 55.49 0.58 -25.79 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.01 9.88 -15.06 -0.15 -6.16 16 8 H 0.08 1.97 7.21 -52.49 -0.38 1.60 16 9 N -0.59 -14.27 3.35 -163.10 -0.55 -14.81 16 10 C 0.18 4.10 5.44 -1.92 -0.01 4.09 16 11 C -0.14 -2.39 6.57 -24.86 -0.16 -2.55 16 12 C -0.13 -2.12 2.87 -89.10 -0.26 -2.38 16 13 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 14 C 0.13 1.84 5.98 -3.76 -0.02 1.82 16 15 N -0.60 -8.30 3.00 -173.88 -0.52 -8.82 16 16 C 0.59 8.56 7.63 -12.66 -0.10 8.46 16 17 O -0.53 -9.08 16.39 5.25 0.09 -8.99 16 18 C -0.27 -3.21 6.13 -35.93 -0.22 -3.43 16 19 C -0.11 -1.17 10.47 -39.77 -0.42 -1.59 16 20 C 0.06 0.55 11.14 -18.75 -0.21 0.34 16 21 N -0.54 -6.01 11.29 21.63 0.24 -5.77 16 22 S 0.44 4.54 19.55 -107.50 -2.10 2.44 16 23 C 0.10 1.27 5.33 -3.49 -0.02 1.25 16 24 C -0.13 -2.02 5.48 -26.99 -0.15 -2.17 16 25 C 0.17 3.15 2.57 -67.99 -0.17 2.97 16 26 H 0.02 0.41 7.92 -51.93 -0.41 0.00 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 29 H 0.04 1.00 7.76 -51.93 -0.40 0.59 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 32 H 0.09 1.36 6.98 -51.93 -0.36 1.00 16 33 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.17 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.07 0.82 3.87 -24.58 -0.10 0.73 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.30 7.62 -51.93 -0.40 0.90 16 39 H 0.07 1.21 8.12 -51.93 -0.42 0.78 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -31.45 321.59 -9.35 -40.80 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.93 Total: -0.76 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.98 Total: 0.39 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.24 Total: -55.19 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -2.10 Total: 2.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.45 -9.35 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036729521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.202 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds