Wall clock time and date at job start Tue Mar 31 2020 09:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99836 * 2 1 4 4 H 1.48492 * 109.47048 * 269.99691 * 3 2 1 5 5 H 1.48495 * 109.47046 * 30.00252 * 3 2 1 6 6 H 1.48504 * 109.47038 * 150.00132 * 3 2 1 7 7 C 1.38815 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00036 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.48152 * 126.40571 * 359.96985 * 9 7 2 11 11 C 1.55293 * 107.21336 * 184.85227 * 10 9 7 12 12 C 1.54255 * 101.60220 * 22.55042 * 11 10 9 13 13 H 1.08998 * 111.33130 * 78.92805 * 12 11 10 14 14 C 1.52241 * 114.70579 * 207.18823 * 12 11 10 15 15 N 1.47714 * 106.35754 * 169.60123 * 14 12 11 16 16 C 1.34779 * 119.68481 * 127.96588 * 15 14 12 17 17 O 1.21628 * 120.00066 * 353.43010 * 16 15 14 18 18 C 1.47099 * 120.00080 * 173.42714 * 16 15 14 19 19 C 1.38391 * 128.00015 * 157.33782 * 18 16 15 20 20 C 1.37574 * 111.26460 * 179.82455 * 19 18 16 21 21 N 1.29554 * 117.94776 * 0.50176 * 20 19 18 22 22 S 1.56307 * 110.38408 * 359.71542 * 21 20 19 23 23 C 1.46597 * 120.63213 * 307.94385 * 15 14 12 24 24 C 1.53951 * 110.58097 * 47.82080 * 23 15 14 25 25 C 1.45474 * 126.40183 * 180.02562 * 9 7 2 26 26 H 1.09005 * 109.27149 * 266.17830 * 25 9 7 27 27 H 0.96989 * 119.99966 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.92509 * 304.30590 * 10 9 7 29 29 H 1.09006 * 109.92006 * 65.40824 * 10 9 7 30 30 H 1.09004 * 110.95482 * 140.72729 * 11 10 9 31 31 H 1.08993 * 110.95646 * 264.45425 * 11 10 9 32 32 H 1.09000 * 110.06874 * 288.81874 * 14 12 11 33 33 H 1.09004 * 110.06514 * 50.39023 * 14 12 11 34 34 H 1.08003 * 124.36055 * 359.97438 * 19 18 16 35 35 H 1.07996 * 121.02576 * 180.19364 * 20 19 18 36 36 H 1.08995 * 109.25735 * 168.10865 * 23 15 14 37 37 H 1.09004 * 109.25056 * 287.53979 * 23 15 14 38 38 H 1.09002 * 109.87826 * 189.48943 * 24 23 15 39 39 H 1.09000 * 109.88105 * 68.41296 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1466 -2.5534 0.0006 11 6 -0.4384 -4.0735 0.1261 12 6 0.8685 -4.5886 0.7634 13 1 0.8918 -4.3910 1.8350 14 6 1.2011 -6.0404 0.4478 15 7 2.5824 -6.2631 0.9216 16 6 2.8486 -7.3016 1.7384 17 8 1.9386 -7.9784 2.1780 18 6 4.2397 -7.6166 2.0982 19 6 4.6970 -8.3154 3.2017 20 6 6.0692 -8.4133 3.1968 21 7 6.7139 -7.8597 2.2189 22 16 5.7168 -7.1829 1.2234 23 6 3.6666 -5.3657 0.5114 24 6 3.2476 -3.8948 0.6878 25 6 1.9080 -3.7211 0.0016 26 1 1.9900 -4.0787 -1.0249 27 1 -0.4849 0.8400 0.0004 28 1 -0.5802 -2.0209 0.8472 29 1 -0.5633 -2.1709 -0.9312 30 1 -1.2916 -4.2540 0.7800 31 1 -0.5987 -4.5218 -0.8543 32 1 0.5140 -6.7041 0.9726 33 1 1.1418 -6.2126 -0.6269 34 1 4.0586 -8.7322 3.9667 35 1 6.5931 -8.9314 3.9863 36 1 4.5477 -5.5642 1.1214 37 1 3.9069 -5.5478 -0.5362 38 1 3.9879 -3.2408 0.2270 39 1 3.1539 -3.6608 1.7483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036729521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:59 Heat of formation + Delta-G solvation = 31.341271 kcal Electronic energy + Delta-G solvation = -23346.345679 eV Core-core repulsion = 19995.079113 eV Total energy + Delta-G solvation = -3351.266566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58824 -40.27024 -39.44328 -36.90062 -34.59946 -33.12813 -32.70916 -31.28043 -29.78078 -27.32531 -26.57768 -24.93710 -23.94564 -22.73937 -21.82820 -21.12296 -20.27796 -19.50578 -18.42339 -17.64009 -17.29338 -16.97051 -16.59022 -16.16648 -15.79230 -15.68327 -15.32151 -15.06354 -14.77222 -14.32938 -14.27713 -14.06569 -13.88331 -13.31714 -13.22656 -13.08526 -12.70704 -12.59514 -12.34190 -12.19410 -11.99431 -11.80269 -11.68285 -11.55428 -11.45611 -11.18537 -10.98186 -10.76021 -10.68311 -9.82539 -9.66128 -8.85058 -7.81258 -5.15470 -0.74045 0.20640 0.88302 1.23246 1.48090 1.49151 1.57282 1.70899 1.98197 2.52357 3.25129 3.37770 3.49498 3.70869 3.84842 3.99740 4.03145 4.09066 4.12702 4.19133 4.36393 4.46072 4.63727 4.67166 4.69459 4.74390 4.81022 4.89436 4.90224 5.03076 5.09966 5.20505 5.39590 5.52517 5.53685 5.55287 5.68714 5.79643 6.16783 6.23235 6.88407 7.11812 7.82176 8.50452 9.30575 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.003998 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.963106 B = 7002.495189 C = 8033.706011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.229 4.229 8 H 0.089 0.911 9 N -0.615 5.615 10 C 0.181 3.819 11 C -0.120 4.120 12 C -0.111 4.111 13 H 0.061 0.939 14 C 0.137 3.863 15 N -0.601 5.601 16 C 0.594 3.406 17 O -0.562 6.562 18 C -0.296 4.296 19 C -0.106 4.106 20 C 0.065 3.935 21 N -0.557 5.557 22 S 0.461 5.539 23 C 0.108 3.892 24 C -0.121 4.121 25 C 0.156 3.844 26 H 0.031 0.969 27 H 0.244 0.756 28 H 0.014 0.986 29 H 0.005 0.995 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.186 0.814 35 H 0.213 0.787 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.487 -17.436 2.595 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.801 3.199 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.358 4.358 8 H 0.107 0.893 9 N -0.340 5.340 10 C 0.056 3.944 11 C -0.159 4.159 12 C -0.132 4.132 13 H 0.080 0.920 14 C 0.015 3.985 15 N -0.332 5.332 16 C 0.382 3.618 17 O -0.443 6.443 18 C -0.429 4.429 19 C -0.142 4.142 20 C -0.127 4.127 21 N -0.386 5.386 22 S 0.617 5.383 23 C -0.017 4.017 24 C -0.160 4.160 25 C 0.050 3.950 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.023 0.977 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.204 0.796 35 H 0.229 0.771 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.465 -16.773 1.338 20.361 hybrid contribution -0.987 0.731 1.538 1.968 sum 10.478 -16.042 2.876 19.376 Atomic orbital electron populations 1.70162 1.06352 1.25013 1.58841 1.25598 0.96466 1.00901 1.03218 0.85162 0.77756 0.79592 0.77375 1.21429 1.22723 1.19154 1.19425 0.91104 0.83350 1.41895 0.89291 1.44483 1.02241 1.00835 1.86431 1.21302 0.83710 0.91765 0.97607 1.22671 0.96694 0.95359 1.01137 1.22576 0.96671 0.94670 0.99240 0.92037 1.21617 0.81134 0.95067 1.00662 1.48191 1.10514 1.26948 1.47570 1.17078 0.86441 0.80382 0.77904 1.90780 1.46732 1.52179 1.54564 1.26815 0.99865 1.11145 1.05119 1.22392 0.95691 0.97914 0.98218 1.22639 0.91172 1.00520 0.98348 1.72158 1.36361 1.18368 1.11717 1.81861 0.86212 1.43770 1.26414 1.22192 0.88305 0.88655 1.02513 1.21788 0.98194 0.95193 1.00850 1.20891 0.92856 0.85154 0.96146 0.95148 0.94681 0.96716 0.97679 0.90423 0.89902 0.88835 0.88567 0.79642 0.77084 0.89269 0.87915 0.89828 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.04 10.43 21.65 0.23 -56.81 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 3 Si 0.97 44.95 29.55 68.60 2.03 46.98 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.23 -12.20 9.88 84.03 0.83 -11.37 16 8 H 0.09 4.43 7.21 -2.91 -0.02 4.41 16 9 N -0.62 -30.00 3.35 -669.92 -2.24 -32.24 16 10 C 0.18 8.73 5.44 86.85 0.47 9.20 16 11 C -0.12 -4.17 6.57 31.81 0.21 -3.96 16 12 C -0.11 -3.66 2.87 -9.81 -0.03 -3.68 16 13 H 0.06 2.28 8.12 -2.39 -0.02 2.26 16 14 C 0.14 3.61 5.98 85.90 0.51 4.12 16 15 N -0.60 -15.33 3.00 -822.29 -2.47 -17.79 16 16 C 0.59 16.05 7.63 86.57 0.66 16.71 16 17 O -0.56 -18.55 16.39 -4.12 -0.07 -18.61 16 18 C -0.30 -6.41 6.13 24.63 0.15 -6.26 16 19 C -0.11 -1.87 10.47 22.15 0.23 -1.63 16 20 C 0.06 1.00 11.14 84.87 0.95 1.94 16 21 N -0.56 -10.77 11.29 -85.47 -0.96 -11.74 16 22 S 0.46 8.25 19.55 -56.49 -1.10 7.15 16 23 C 0.11 2.43 5.33 86.68 0.46 2.89 16 24 C -0.12 -3.69 5.48 30.43 0.17 -3.52 16 25 C 0.16 5.74 2.57 45.51 0.12 5.86 16 26 H 0.03 1.10 7.92 -2.38 -0.02 1.08 16 27 H 0.24 14.32 8.31 -92.72 -0.77 13.55 16 28 H 0.01 0.81 7.21 -2.39 -0.02 0.79 16 29 H 0.00 0.27 7.76 -2.38 -0.02 0.25 16 30 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 32 H 0.09 2.54 6.98 -2.39 -0.02 2.53 16 33 H 0.10 2.18 8.08 -2.38 -0.02 2.16 16 34 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 35 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.09 1.76 3.87 -19.78 -0.08 1.69 16 37 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.08 2.51 7.62 -2.39 -0.02 2.49 16 39 H 0.05 1.79 8.12 -2.39 -0.02 1.77 16 Total: -1.00 -70.38 321.59 1.60 -68.78 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.00 Total: 7.40 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.20 Total: 6.91 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -5.45 Total: -118.59 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.07 Total: -18.61 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 8.25 SS G_CDS: -1.10 Total: 7.15 kcal Total: -70.38 1.60 -68.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036729521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.117 kcal (2) G-P(sol) polarization free energy of solvation -70.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds