Wall clock time and date at job start Tue Mar 31 2020 09:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99948 * 2 1 4 4 H 1.48493 * 109.46874 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47062 * 299.99865 * 3 2 1 6 6 H 1.48496 * 109.46900 * 59.99684 * 3 2 1 7 7 C 1.38804 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.47563 * 125.67490 * 0.04550 * 9 7 2 11 11 C 1.55180 * 105.00798 * 203.82988 * 10 9 7 12 12 C 1.53656 * 101.41604 * 324.50395 * 11 10 9 13 13 C 1.53655 * 111.41610 * 155.03184 * 12 11 10 14 14 C 1.55430 * 101.31159 * 87.06230 * 13 12 11 15 15 N 1.47556 * 104.88165 * 35.83158 * 14 13 12 16 16 C 1.34784 * 125.67562 * 156.03581 * 15 14 13 17 17 O 1.21617 * 119.99811 * 354.56375 * 16 15 14 18 18 C 1.47249 * 120.00260 * 174.56909 * 16 15 14 19 19 N 1.30554 * 125.54670 * 185.14639 * 18 16 15 20 20 C 1.30703 * 115.90996 * 180.02562 * 19 18 16 21 21 C 1.34224 * 115.78528 * 359.97438 * 20 19 18 22 22 S 1.71070 * 109.09161 * 359.72926 * 21 20 19 23 23 C 1.47398 * 108.65238 * 335.76722 * 15 14 13 24 24 C 1.47403 * 125.67702 * 180.02562 * 9 7 2 25 25 H 0.97000 * 120.00174 * 0.02562 * 1 2 3 26 26 H 1.09001 * 110.33142 * 322.70774 * 10 9 7 27 27 H 1.09002 * 110.33427 * 84.83713 * 10 9 7 28 28 H 1.09000 * 111.03029 * 206.47141 * 11 10 9 29 29 H 1.08991 * 111.03954 * 82.53890 * 11 10 9 30 30 H 1.08997 * 111.03492 * 205.29596 * 13 12 11 31 31 H 1.09000 * 111.02987 * 329.18496 * 13 12 11 32 32 H 1.09004 * 110.48775 * 276.93909 * 14 13 12 33 33 H 1.09009 * 110.30131 * 154.62769 * 14 13 12 34 34 H 1.08004 * 122.10593 * 179.97438 * 20 19 18 35 35 H 1.07997 * 125.45913 * 180.02562 * 21 20 19 36 36 H 1.08996 * 109.99079 * 121.72193 * 23 15 14 37 37 H 1.09003 * 109.99159 * 242.98675 * 23 15 14 38 38 H 1.09000 * 109.98556 * 58.57176 * 24 9 7 39 39 H 1.09007 * 109.98185 * 297.26662 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1428 -2.5340 0.0013 11 6 -0.4072 -3.9375 0.6083 12 6 0.7835 -4.7367 0.0565 13 6 1.1153 -5.9398 0.9529 14 6 0.1669 -7.0248 0.3704 15 7 0.1364 -6.7616 -1.0812 16 6 -0.1593 -7.6641 -2.0376 17 8 -0.3348 -8.8302 -1.7400 18 6 -0.2699 -7.2384 -3.4429 19 7 -0.6419 -7.9964 -4.4386 20 6 -0.6733 -7.4226 -5.6125 21 6 -0.3190 -6.1282 -5.6394 22 16 0.0707 -5.6217 -4.0526 23 6 0.4768 -5.3460 -1.3110 24 6 1.9328 -3.7312 0.0028 25 1 -0.4850 0.8400 -0.0004 26 1 -0.6003 -1.7616 0.6196 27 1 -0.5285 -2.4810 -1.0168 28 1 -1.3523 -4.3464 0.2510 29 1 -0.3844 -3.9034 1.6974 30 1 2.1605 -6.2303 0.8467 31 1 0.8738 -5.7297 1.9948 32 1 -0.8324 -6.9255 0.7944 33 1 0.5653 -8.0203 0.5666 34 1 -0.9658 -7.9563 -6.5047 35 1 -0.2896 -5.5049 -6.5208 36 1 1.3523 -5.2733 -1.9561 37 1 -0.3668 -4.8295 -1.7689 38 1 2.5729 -3.8499 0.8770 39 1 2.5139 -3.8781 -0.9077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041753622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:57 Heat of formation + Delta-G solvation = 53.821469 kcal Electronic energy + Delta-G solvation = -23314.195408 eV Core-core repulsion = 19963.903657 eV Total energy + Delta-G solvation = -3350.291751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.55336 -39.70786 -38.23619 -35.72468 -32.82599 -31.38969 -30.29834 -29.26383 -28.46465 -26.71311 -25.56014 -24.04377 -22.86461 -21.18265 -20.42221 -19.59840 -18.78711 -18.44156 -16.99756 -16.70833 -16.15065 -15.84217 -15.05647 -14.95868 -14.59137 -14.42736 -13.89691 -13.73965 -13.55100 -13.31407 -12.98268 -12.47180 -12.23938 -12.07461 -11.98211 -11.60919 -11.44753 -11.10753 -11.00518 -10.86095 -10.58005 -10.34384 -10.10961 -10.01540 -9.86567 -9.81321 -9.76374 -9.57073 -9.07709 -8.75772 -8.70491 -6.91830 -5.72690 -3.14366 0.12458 1.07755 1.55646 2.23291 2.59654 3.12905 3.34912 3.41118 3.43183 4.02139 4.42046 4.55690 4.63745 4.82530 4.85759 4.95449 5.18817 5.19043 5.28635 5.42484 5.54131 5.58432 5.74001 5.78093 5.82992 5.85910 5.92342 6.06948 6.12813 6.24065 6.43413 6.48044 6.61974 6.70532 7.20885 7.40539 7.45451 7.55660 7.77691 7.94577 8.27740 9.14430 9.75029 10.39099 11.31413 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.004320 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.632401 B = 6480.469324 C = 7606.639370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.133 4.133 12 C -0.075 4.075 13 C -0.118 4.118 14 C 0.112 3.888 15 N -0.609 5.609 16 C 0.610 3.390 17 O -0.510 6.510 18 C -0.013 4.013 19 N -0.404 5.404 20 C 0.023 3.977 21 C -0.284 4.284 22 S 0.224 5.776 23 C 0.102 3.898 24 C 0.150 3.850 25 H 0.252 0.748 26 H 0.107 0.893 27 H 0.013 0.987 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.177 0.823 35 H 0.183 0.817 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.033 0.967 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 -10.999 -5.311 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.172 4.172 12 C -0.077 4.077 13 C -0.156 4.156 14 C -0.009 4.009 15 N -0.344 5.344 16 C 0.394 3.606 17 O -0.385 6.385 18 C -0.288 4.288 19 N -0.121 5.121 20 C -0.134 4.134 21 C -0.425 4.425 22 S 0.479 5.521 23 C -0.021 4.021 24 C 0.024 3.976 25 H 0.063 0.937 26 H 0.124 0.876 27 H 0.031 0.969 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.194 0.806 35 H 0.200 0.800 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.523 -11.079 -4.648 12.026 hybrid contribution 0.144 0.543 -1.291 1.408 sum -0.379 -10.536 -5.939 12.100 Atomic orbital electron populations 1.69797 1.04883 1.24727 1.57601 1.24763 0.95693 0.97674 1.02341 0.86029 0.78703 0.83672 0.77276 1.20518 1.21773 1.21735 1.19111 0.90542 0.82350 1.43092 0.90389 1.44627 1.01817 0.99569 1.86968 1.22010 0.84664 0.92371 0.98267 1.22958 0.94970 0.98687 1.00546 1.21476 0.99003 0.94875 0.92297 1.22749 0.99470 0.93606 0.99791 1.22430 1.00447 0.99993 0.78044 1.48432 1.68045 1.10675 1.07219 1.16224 0.77986 0.84673 0.81716 1.90832 1.49930 1.16550 1.81224 1.27415 1.09542 0.93517 0.98326 1.66612 1.11967 1.35066 0.98431 1.21789 1.03696 0.92066 0.95851 1.27167 1.08631 1.01252 1.05421 1.84821 1.57449 1.12431 0.97351 1.22208 1.01193 0.79844 0.98863 1.21106 0.92625 0.85395 0.98449 0.93746 0.87554 0.96936 0.92154 0.91311 0.90358 0.89097 0.90725 0.90040 0.80637 0.80012 0.90408 0.90064 0.94913 0.95755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.47 10.10 55.49 0.56 -24.91 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -5.81 10.28 -15.06 -0.15 -5.96 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.08 3.41 -170.41 -0.58 -14.66 16 10 C 0.15 3.33 5.85 -2.31 -0.01 3.32 16 11 C -0.13 -2.20 5.85 -25.24 -0.15 -2.35 16 12 C -0.08 -1.12 0.61 -154.02 -0.09 -1.22 16 13 C -0.12 -1.41 5.94 -25.10 -0.15 -1.56 16 14 C 0.11 1.37 6.89 -2.17 -0.01 1.36 16 15 N -0.61 -8.57 3.34 -172.03 -0.57 -9.15 16 16 C 0.61 9.78 7.83 -12.60 -0.10 9.68 16 17 O -0.51 -9.64 17.31 5.26 0.09 -9.55 16 18 C -0.01 -0.19 7.38 -14.43 -0.11 -0.30 16 19 N -0.40 -6.09 10.60 -11.51 -0.12 -6.21 16 20 C 0.02 0.26 11.24 -19.45 -0.22 0.04 16 21 C -0.28 -2.89 11.09 29.32 0.33 -2.57 16 22 S 0.22 2.70 18.64 -107.50 -2.00 0.70 16 23 C 0.10 1.44 4.32 -3.64 -0.02 1.43 16 24 C 0.15 2.76 6.51 -3.65 -0.02 2.74 16 25 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.11 2.70 5.89 -51.93 -0.31 2.40 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 29 H 0.07 1.11 7.82 -51.93 -0.41 0.71 16 30 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.09 0.99 7.78 -51.93 -0.40 0.59 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.97 7.99 -51.92 -0.42 0.55 16 34 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.08 1.07 6.30 -51.93 -0.33 0.75 16 37 H 0.08 1.18 6.53 -51.93 -0.34 0.84 16 38 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 39 H 0.02 0.45 7.42 -51.93 -0.39 0.06 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -31.31 325.69 -8.61 -39.93 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.06 Total: -1.40 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.81 Total: 4.27 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.72 Total: -54.93 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.00 Total: 0.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.31 -8.61 -39.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041753622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.748 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds