Wall clock time and date at job start Tue Mar 31 2020 09:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00002 * 2 1 4 4 H 1.48505 * 109.46982 * 85.00855 * 3 2 1 5 5 H 1.48504 * 109.47115 * 325.00779 * 3 2 1 6 6 H 1.48500 * 109.47468 * 205.00478 * 3 2 1 7 7 C 1.38816 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99523 * 185.77899 * 7 2 1 9 9 N 1.36939 * 119.99840 * 5.77087 * 7 2 1 10 10 C 1.48381 * 126.56189 * 4.77065 * 9 7 2 11 11 C 1.55479 * 106.97246 * 185.52237 * 10 9 7 12 12 C 1.53432 * 101.67133 * 22.59595 * 11 10 9 13 13 H 1.09003 * 111.15124 * 78.81576 * 12 11 10 14 14 C 1.45024 * 126.55704 * 184.45470 * 9 7 2 15 15 H 1.08999 * 108.70064 * 264.09790 * 14 9 7 16 16 C 1.51347 * 119.02319 * 29.32015 * 14 9 7 17 17 C 1.53869 * 107.27157 * 183.59870 * 16 14 9 18 18 C 1.52719 * 111.51943 * 302.85407 * 17 16 14 19 19 N 1.45726 * 116.36481 * 207.28201 * 12 11 10 20 20 C 1.34772 * 122.22664 * 350.06974 * 19 12 11 21 21 O 1.21628 * 119.99999 * 356.62144 * 20 19 12 22 22 C 1.47106 * 119.99958 * 176.61662 * 20 19 12 23 23 C 1.38390 * 127.99911 * 210.17920 * 22 20 19 24 24 C 1.37576 * 111.25932 * 179.88883 * 23 22 20 25 25 N 1.29552 * 117.95173 * 0.43422 * 24 23 22 26 26 S 1.56307 * 110.38261 * 359.75245 * 25 24 23 27 27 H 0.96997 * 120.00298 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.96250 * 304.89789 * 10 9 7 29 29 H 1.09001 * 109.96336 * 66.10570 * 10 9 7 30 30 H 1.08991 * 110.98636 * 140.69293 * 11 10 9 31 31 H 1.09003 * 110.98245 * 264.50387 * 11 10 9 32 32 H 1.08997 * 110.09697 * 64.05811 * 16 14 9 33 33 H 1.08999 * 109.73596 * 302.93354 * 16 14 9 34 34 H 1.08997 * 109.06991 * 182.33387 * 17 16 14 35 35 H 1.09003 * 109.07319 * 63.37781 * 17 16 14 36 36 H 1.08999 * 109.16459 * 288.12942 * 18 17 16 37 37 H 1.09003 * 109.11972 * 168.91356 * 18 17 16 38 38 H 1.07996 * 124.36759 * 0.03600 * 23 22 20 39 39 H 1.07997 * 121.02391 * 180.19107 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 1.3948 5 1 1.5043 2.6199 -0.8029 6 1 3.5965 1.4120 -0.5918 7 6 2.0103 -1.2022 -0.0005 8 1 3.0861 -1.2045 0.0936 9 7 1.3307 -2.3850 -0.1203 10 6 -0.1252 -2.5481 -0.3557 11 6 -0.4306 -4.0704 -0.2734 12 6 0.7512 -4.5793 0.5623 13 1 0.5998 -4.3757 1.6224 14 6 1.8975 -3.7180 -0.0477 15 1 2.0957 -4.0691 -1.0604 16 6 3.1318 -3.9460 0.7978 17 6 3.5495 -5.4149 0.6096 18 6 2.4188 -6.3711 0.9828 19 7 1.1475 -5.9649 0.3463 20 6 0.4045 -6.8193 -0.3847 21 8 -0.6652 -6.4600 -0.8385 22 6 0.8873 -8.1864 -0.6336 23 6 0.6393 -8.9907 -1.7321 24 6 1.2654 -10.2096 -1.6094 25 7 1.9574 -10.4316 -0.5369 26 16 1.9138 -9.1862 0.4066 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6880 -2.0139 0.4098 29 1 -0.3874 -2.1682 -1.3432 30 1 -1.3764 -4.2517 0.2369 31 1 -0.4307 -4.5226 -1.2652 32 1 2.9072 -3.7560 1.8473 33 1 3.9334 -3.2870 0.4642 34 1 4.4142 -5.6228 1.2398 35 1 3.8231 -5.5766 -0.4331 36 1 2.2927 -6.3710 2.0655 37 1 2.6784 -7.3771 0.6531 38 1 0.0344 -8.6984 -2.5776 39 1 1.1794 -10.9598 -2.3815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049511607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:33 Heat of formation + Delta-G solvation = 57.389632 kcal Electronic energy + Delta-G solvation = -23686.054877 eV Core-core repulsion = 20335.917854 eV Total energy + Delta-G solvation = -3350.137024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.46284 -39.30317 -37.68332 -35.55321 -32.71393 -32.45092 -31.46769 -29.03613 -28.34038 -26.44123 -24.57475 -24.35771 -22.17433 -21.60719 -20.48094 -19.78542 -19.25291 -18.09082 -16.82111 -16.55138 -15.79770 -15.52824 -15.16432 -14.75589 -14.64710 -14.22671 -14.08002 -13.66353 -13.50190 -13.33247 -12.98061 -12.52125 -12.37775 -11.91471 -11.73960 -11.54545 -11.29154 -10.95721 -10.83918 -10.67261 -10.51882 -10.47823 -10.14900 -10.08135 -9.90124 -9.83683 -9.65751 -9.24812 -8.87791 -8.64448 -8.36641 -6.85095 -5.70028 -3.07781 0.18039 1.04300 1.67084 2.07889 2.85421 3.12771 3.39058 3.44702 3.46722 4.27699 4.47419 4.68034 4.79895 4.89574 4.97805 5.15229 5.29179 5.37325 5.40694 5.55449 5.59104 5.62771 5.70291 5.79391 5.93370 6.01826 6.18267 6.23283 6.30337 6.33455 6.49488 6.66625 6.71288 6.83624 7.09581 7.45397 7.54037 7.65630 7.82610 8.17959 8.24880 9.16637 9.81111 10.48610 11.39170 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.031208 B = 0.003863 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.980309 B = 7246.813186 C = 7821.717114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.165 3.835 11 C -0.129 4.129 12 C 0.117 3.883 13 H 0.086 0.914 14 C 0.160 3.840 15 H 0.020 0.980 16 C -0.116 4.116 17 C -0.128 4.128 18 C 0.104 3.896 19 N -0.591 5.591 20 C 0.593 3.407 21 O -0.513 6.513 22 C -0.256 4.256 23 C -0.120 4.120 24 C 0.062 3.938 25 N -0.540 5.540 26 S 0.422 5.578 27 H 0.252 0.748 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.174 0.826 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -18.379 1.198 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.315 5.315 10 C 0.040 3.960 11 C -0.167 4.167 12 C 0.013 3.987 13 H 0.104 0.896 14 C 0.050 3.950 15 H 0.037 0.963 16 C -0.154 4.154 17 C -0.167 4.167 18 C -0.021 4.021 19 N -0.323 5.323 20 C 0.379 3.621 21 O -0.389 6.389 22 C -0.390 4.390 23 C -0.155 4.155 24 C -0.130 4.130 25 N -0.367 5.367 26 S 0.577 5.423 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.191 0.809 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.318 -18.734 2.571 19.643 hybrid contribution -0.486 1.080 -1.642 2.024 sum 4.832 -17.654 0.929 18.327 Atomic orbital electron populations 1.69924 1.04930 1.25059 1.56547 1.24811 0.95627 0.97672 1.02162 0.86138 0.78675 0.83696 0.77457 1.21652 1.21667 1.20675 1.18985 0.90603 0.82316 1.43658 0.90346 1.44097 1.04171 0.99261 1.84013 1.21866 0.84456 0.89000 1.00650 1.22946 0.95807 0.97869 1.00122 1.22611 0.98835 0.77382 0.99860 0.89570 1.20901 0.91338 0.87145 0.95618 0.96278 1.21494 0.99164 0.93859 1.00927 1.21891 0.96853 0.95637 1.02313 1.22079 0.84057 0.97732 0.98227 1.47908 1.21914 1.11955 1.50557 1.16741 0.84194 0.82139 0.79037 1.90848 1.21254 1.76065 1.50729 1.27050 1.08092 1.01313 1.02527 1.22094 1.01236 0.92449 0.99743 1.22234 0.96467 0.97919 0.96402 1.72160 1.25401 1.28504 1.10677 1.81816 1.38936 0.97095 1.24411 0.93710 0.91016 0.95115 0.91750 0.90384 0.91448 0.91230 0.90440 0.91680 0.90340 0.91197 0.80891 0.80306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.52 55.49 0.58 -26.07 16 2 C -0.01 -0.17 5.47 -17.43 -0.10 -0.26 16 3 Si 0.91 21.73 29.56 -169.99 -5.02 16.71 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.13 9.91 -15.06 -0.15 -6.28 16 8 H 0.08 2.02 7.37 -52.49 -0.39 1.64 16 9 N -0.59 -14.73 3.35 -162.92 -0.55 -15.28 16 10 C 0.16 4.05 5.58 -1.69 -0.01 4.04 16 11 C -0.13 -2.65 4.95 -25.19 -0.12 -2.78 16 12 C 0.12 2.14 3.33 -66.62 -0.22 1.92 16 13 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 14 C 0.16 3.20 2.61 -68.05 -0.18 3.02 16 15 H 0.02 0.43 8.05 -51.93 -0.42 0.01 16 16 C -0.12 -1.88 5.47 -27.11 -0.15 -2.03 16 17 C -0.13 -1.53 5.92 -26.42 -0.16 -1.69 16 18 C 0.10 1.19 5.97 -3.44 -0.02 1.17 16 19 N -0.59 -8.98 2.91 -165.16 -0.48 -9.46 16 20 C 0.59 9.36 7.62 -12.66 -0.10 9.26 16 21 O -0.51 -9.69 13.98 5.25 0.07 -9.61 16 22 C -0.26 -3.21 6.21 -35.93 -0.22 -3.43 16 23 C -0.12 -1.29 10.51 -39.77 -0.42 -1.70 16 24 C 0.06 0.60 11.14 -18.75 -0.21 0.39 16 25 N -0.54 -5.97 11.29 21.63 0.24 -5.72 16 26 S 0.42 4.28 19.77 -107.50 -2.13 2.16 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.07 1.94 6.77 -51.93 -0.35 1.58 16 29 H 0.03 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.67 6.32 -51.93 -0.33 1.34 16 32 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 33 H 0.07 1.18 7.72 -51.93 -0.40 0.78 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.70 3.48 -23.76 -0.08 0.61 16 38 H 0.17 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 318.46 15.07 4.80 4.80 Total: -1.00 -31.89 318.46 -9.43 -41.32 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.90 Total: -0.47 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.05 Total: 1.63 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.20 Total: -56.53 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.61 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -2.13 Total: 2.16 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.89 -9.43 -41.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049511607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.710 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds