Wall clock time and date at job start Tue Mar 31 2020 09:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00002 * 2 1 4 4 H 1.48505 * 109.46982 * 85.00855 * 3 2 1 5 5 H 1.48504 * 109.47115 * 325.00779 * 3 2 1 6 6 H 1.48500 * 109.47468 * 205.00478 * 3 2 1 7 7 C 1.38816 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99523 * 185.77899 * 7 2 1 9 9 N 1.36939 * 119.99840 * 5.77087 * 7 2 1 10 10 C 1.48381 * 126.56189 * 4.77065 * 9 7 2 11 11 C 1.55479 * 106.97246 * 185.52237 * 10 9 7 12 12 C 1.53432 * 101.67133 * 22.59595 * 11 10 9 13 13 H 1.09003 * 111.15124 * 78.81576 * 12 11 10 14 14 C 1.45024 * 126.55704 * 184.45470 * 9 7 2 15 15 H 1.08999 * 108.70064 * 264.09790 * 14 9 7 16 16 C 1.51347 * 119.02319 * 29.32015 * 14 9 7 17 17 C 1.53869 * 107.27157 * 183.59870 * 16 14 9 18 18 C 1.52719 * 111.51943 * 302.85407 * 17 16 14 19 19 N 1.45726 * 116.36481 * 207.28201 * 12 11 10 20 20 C 1.34772 * 122.22664 * 350.06974 * 19 12 11 21 21 O 1.21628 * 119.99999 * 356.62144 * 20 19 12 22 22 C 1.47106 * 119.99958 * 176.61662 * 20 19 12 23 23 C 1.38390 * 127.99911 * 210.17920 * 22 20 19 24 24 C 1.37576 * 111.25932 * 179.88883 * 23 22 20 25 25 N 1.29552 * 117.95173 * 0.43422 * 24 23 22 26 26 S 1.56307 * 110.38261 * 359.75245 * 25 24 23 27 27 H 0.96997 * 120.00298 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.96250 * 304.89789 * 10 9 7 29 29 H 1.09001 * 109.96336 * 66.10570 * 10 9 7 30 30 H 1.08991 * 110.98636 * 140.69293 * 11 10 9 31 31 H 1.09003 * 110.98245 * 264.50387 * 11 10 9 32 32 H 1.08997 * 110.09697 * 64.05811 * 16 14 9 33 33 H 1.08999 * 109.73596 * 302.93354 * 16 14 9 34 34 H 1.08997 * 109.06991 * 182.33387 * 17 16 14 35 35 H 1.09003 * 109.07319 * 63.37781 * 17 16 14 36 36 H 1.08999 * 109.16459 * 288.12942 * 18 17 16 37 37 H 1.09003 * 109.11972 * 168.91356 * 18 17 16 38 38 H 1.07996 * 124.36759 * 0.03600 * 23 22 20 39 39 H 1.07997 * 121.02391 * 180.19107 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 1.3948 5 1 1.5043 2.6199 -0.8029 6 1 3.5965 1.4120 -0.5918 7 6 2.0103 -1.2022 -0.0005 8 1 3.0861 -1.2045 0.0936 9 7 1.3307 -2.3850 -0.1203 10 6 -0.1252 -2.5481 -0.3557 11 6 -0.4306 -4.0704 -0.2734 12 6 0.7512 -4.5793 0.5623 13 1 0.5998 -4.3757 1.6224 14 6 1.8975 -3.7180 -0.0477 15 1 2.0957 -4.0691 -1.0604 16 6 3.1318 -3.9460 0.7978 17 6 3.5495 -5.4149 0.6096 18 6 2.4188 -6.3711 0.9828 19 7 1.1475 -5.9649 0.3463 20 6 0.4045 -6.8193 -0.3847 21 8 -0.6652 -6.4600 -0.8385 22 6 0.8873 -8.1864 -0.6336 23 6 0.6393 -8.9907 -1.7321 24 6 1.2654 -10.2096 -1.6094 25 7 1.9574 -10.4316 -0.5369 26 16 1.9138 -9.1862 0.4066 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6880 -2.0139 0.4098 29 1 -0.3874 -2.1682 -1.3432 30 1 -1.3764 -4.2517 0.2369 31 1 -0.4307 -4.5226 -1.2652 32 1 2.9072 -3.7560 1.8473 33 1 3.9334 -3.2870 0.4642 34 1 4.4142 -5.6228 1.2398 35 1 3.8231 -5.5766 -0.4331 36 1 2.2927 -6.3710 2.0655 37 1 2.6784 -7.3771 0.6531 38 1 0.0344 -8.6984 -2.5776 39 1 1.1794 -10.9598 -2.3815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049511607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:32 Heat of formation + Delta-G solvation = 36.696419 kcal Electronic energy + Delta-G solvation = -23686.952202 eV Core-core repulsion = 20335.917854 eV Total energy + Delta-G solvation = -3351.034349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77197 -40.21303 -39.07695 -37.03051 -34.34125 -33.94674 -32.57629 -30.80309 -29.78358 -27.53127 -26.37033 -25.62011 -23.35620 -22.92912 -21.98305 -21.33361 -20.29192 -19.24287 -18.40532 -17.69112 -17.12415 -16.95395 -16.48585 -16.25128 -15.87241 -15.57271 -15.27375 -15.14014 -14.77744 -14.45858 -14.21557 -14.06280 -13.89286 -13.45219 -13.17279 -12.99254 -12.70817 -12.53015 -12.29185 -12.12699 -12.03699 -11.81454 -11.75071 -11.65345 -11.46252 -11.40680 -10.84561 -10.75993 -10.57396 -9.67672 -9.65898 -8.89875 -7.80562 -5.20727 -0.71188 0.18743 0.87314 1.25602 1.47792 1.49490 1.58377 1.69742 1.99855 2.51638 3.19449 3.35760 3.46587 3.84706 3.88473 3.97766 4.01603 4.05803 4.10788 4.20993 4.29863 4.53380 4.56139 4.58380 4.66943 4.72969 4.89447 4.90771 4.99051 5.08896 5.12985 5.27866 5.36607 5.48499 5.52809 5.54466 5.61336 5.74994 6.20546 6.30131 6.96664 7.06319 7.76755 8.46221 9.28277 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.031208 B = 0.003863 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.980309 B = 7246.813186 C = 7821.717114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.232 4.232 8 H 0.089 0.911 9 N -0.610 5.610 10 C 0.174 3.826 11 C -0.112 4.112 12 C 0.133 3.867 13 H 0.091 0.909 14 C 0.153 3.847 15 H 0.003 0.997 16 C -0.111 4.111 17 C -0.119 4.119 18 C 0.098 3.902 19 N -0.592 5.592 20 C 0.591 3.409 21 O -0.556 6.556 22 C -0.290 4.290 23 C -0.113 4.113 24 C 0.068 3.932 25 N -0.555 5.555 26 S 0.467 5.533 27 H 0.246 0.754 28 H 0.042 0.958 29 H -0.007 1.007 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.181 0.819 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.177 -20.938 2.064 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.361 4.361 8 H 0.107 0.893 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.151 4.151 12 C 0.028 3.972 13 H 0.108 0.892 14 C 0.045 3.955 15 H 0.020 0.980 16 C -0.150 4.150 17 C -0.158 4.158 18 C -0.025 4.025 19 N -0.324 5.324 20 C 0.379 3.621 21 O -0.435 6.435 22 C -0.423 4.423 23 C -0.149 4.149 24 C -0.124 4.124 25 N -0.384 5.384 26 S 0.624 5.376 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.011 0.989 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.198 0.802 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 7.839 -21.345 3.461 23.001 hybrid contribution -1.236 1.762 -1.962 2.912 sum 6.603 -19.583 1.499 20.720 Atomic orbital electron populations 1.70150 1.06486 1.25214 1.58229 1.25666 0.96458 1.01084 1.02776 0.85084 0.77779 0.79267 0.77335 1.21118 1.22590 1.19181 1.19403 0.91296 0.83237 1.42175 0.89289 1.44335 1.04338 1.00842 1.83932 1.21579 0.84770 0.91386 0.97400 1.22677 0.97217 0.94861 1.00328 1.22200 0.96468 0.79358 0.99202 0.89159 1.21070 0.93893 0.84872 0.95706 0.97985 1.21464 0.96597 0.96934 0.99957 1.21876 0.98259 0.92355 1.03267 1.22410 0.82006 0.98500 0.99566 1.47933 1.23267 1.10381 1.50796 1.17138 0.83625 0.83293 0.78055 1.90817 1.23147 1.77296 1.52277 1.26782 1.10585 1.00268 1.04671 1.22351 1.00588 0.92494 0.99423 1.22567 0.95285 0.97941 0.96562 1.72161 1.25898 1.28954 1.11373 1.81520 1.37304 0.95779 1.23046 0.94479 0.93950 0.98921 0.91432 0.91342 0.91144 0.92114 0.86323 0.91928 0.87695 0.89201 0.80202 0.77107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.82 10.52 21.65 0.23 -57.60 16 2 C -0.07 -3.80 5.47 84.86 0.46 -3.33 16 3 Si 0.98 45.46 29.56 68.60 2.03 47.48 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.23 -12.75 9.91 84.03 0.83 -11.92 16 8 H 0.09 4.58 7.37 -2.91 -0.02 4.56 16 9 N -0.61 -31.40 3.35 -669.37 -2.24 -33.64 16 10 C 0.17 9.10 5.58 86.87 0.49 9.58 16 11 C -0.11 -4.83 4.95 31.59 0.16 -4.68 16 12 C 0.13 4.85 3.33 46.26 0.15 5.00 16 13 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 14 C 0.15 6.16 2.61 45.70 0.12 6.28 16 15 H 0.00 0.12 8.05 -2.39 -0.02 0.10 16 16 C -0.11 -3.40 5.47 30.35 0.17 -3.24 16 17 C -0.12 -2.43 5.92 30.79 0.18 -2.25 16 18 C 0.10 1.92 5.97 86.03 0.51 2.44 16 19 N -0.59 -17.19 2.91 -794.69 -2.31 -19.51 16 20 C 0.59 18.20 7.62 86.57 0.66 18.86 16 21 O -0.56 -21.34 13.98 -4.12 -0.06 -21.40 16 22 C -0.29 -6.69 6.21 24.64 0.15 -6.53 16 23 C -0.11 -2.16 10.51 22.15 0.23 -1.93 16 24 C 0.07 1.07 11.14 84.87 0.95 2.02 16 25 N -0.56 -10.34 11.29 -85.48 -0.96 -11.30 16 26 S 0.47 7.92 19.77 -56.49 -1.12 6.80 16 27 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.04 2.45 6.77 -2.39 -0.02 2.43 16 29 H -0.01 -0.44 8.10 -2.39 -0.02 -0.45 16 30 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.07 3.09 6.32 -2.39 -0.02 3.07 16 32 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 33 H 0.06 1.96 7.72 -2.39 -0.02 1.95 16 34 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.43 3.48 -20.30 -0.07 1.36 16 38 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 39 H 0.21 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -72.93 318.46 1.63 -71.30 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.01 Total: 7.56 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 5.06 Total: 10.30 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -5.29 Total: -122.05 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.06 Total: -21.40 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 7.92 SS G_CDS: -1.12 Total: 6.80 kcal Total: -72.93 1.63 -71.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049511607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.996 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds