Wall clock time and date at job start Tue Mar 31 2020 10:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29523 * 121.52895 * 2 1 4 4 S 1.69483 * 107.84243 * 179.75261 * 3 2 1 5 5 C 1.72013 * 96.02515 * 0.35883 * 4 3 2 6 6 C 1.37895 * 105.36857 * 359.65224 * 5 4 3 7 7 C 1.47340 * 123.08755 * 180.24148 * 6 5 4 8 8 O 1.21619 * 120.00058 * 175.06630 * 7 6 5 9 9 N 1.34776 * 120.00029 * 355.05822 * 7 6 5 10 10 C 1.47392 * 135.85255 * 5.14104 * 9 7 6 11 11 C 1.52073 * 87.40910 * 154.38630 * 10 9 7 12 12 C 1.47395 * 135.85184 * 185.50784 * 9 7 6 13 13 C 1.53513 * 117.21456 * 267.28213 * 11 10 9 14 14 C 1.54633 * 102.70152 * 262.93128 * 13 11 10 15 15 N 1.47144 * 107.37812 * 339.37921 * 14 13 11 16 16 C 1.36939 * 125.58149 * 179.03975 * 15 14 13 17 17 H 1.08004 * 119.99898 * 180.02562 * 16 15 14 18 18 C 1.38814 * 119.99792 * 0.02936 * 16 15 14 19 19 N 1.31619 * 120.00112 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99657 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47129 * 90.00429 * 20 18 16 22 22 H 1.48498 * 109.47093 * 209.99894 * 20 18 16 23 23 H 1.48500 * 109.47535 * 330.00392 * 20 18 16 24 24 C 1.47758 * 108.83731 * 359.09311 * 15 14 13 25 25 H 1.08995 * 109.47517 * 269.97829 * 1 2 3 26 26 H 1.09001 * 109.47409 * 29.98115 * 1 2 3 27 27 H 1.09008 * 109.46877 * 149.97832 * 1 2 3 28 28 H 1.08000 * 127.31680 * 179.90341 * 5 4 3 29 29 H 1.08994 * 113.54552 * 268.99865 * 10 9 7 30 30 H 1.09001 * 113.53931 * 39.67703 * 10 9 7 31 31 H 1.08996 * 113.54532 * 320.32879 * 12 9 7 32 32 H 1.09007 * 113.54337 * 90.93671 * 12 9 7 33 33 H 1.09005 * 110.76345 * 21.23217 * 13 11 10 34 34 H 1.08993 * 110.76947 * 144.62373 * 13 11 10 35 35 H 1.09000 * 109.86545 * 98.83633 * 14 13 11 36 36 H 1.08999 * 109.85975 * 219.93294 * 14 13 11 37 37 H 0.96994 * 119.99514 * 179.97438 * 19 18 16 38 38 H 1.08995 * 110.40109 * 263.49870 * 24 15 14 39 39 H 1.08999 * 110.40662 * 141.07523 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8310 0.7030 0.0070 5 6 3.6017 -1.0017 -0.0007 6 6 2.2352 -1.1867 -0.0004 7 6 1.6037 -2.5179 -0.0009 8 8 0.3950 -2.6176 0.0900 9 7 2.3655 -3.6251 -0.1021 10 6 3.8102 -3.9157 -0.1340 11 6 3.4740 -5.2976 0.4044 12 6 2.1164 -5.0717 -0.2358 13 6 3.5037 -5.4839 1.9279 14 6 4.9081 -6.0841 2.1697 15 7 5.3645 -6.6616 0.8956 16 6 6.5711 -7.2742 0.6853 17 1 6.8142 -7.6674 -0.2908 18 6 7.4816 -7.3897 1.7267 19 7 7.1855 -6.9101 2.9161 20 14 9.1272 -8.2259 1.4399 21 1 10.1269 -7.2163 1.0079 22 1 9.5832 -8.8663 2.6997 23 1 8.9798 -9.2598 0.3842 24 6 4.3084 -6.4713 -0.1200 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 4.3657 -1.7651 -0.0012 29 1 4.2292 -3.9304 -1.1400 30 1 4.3920 -3.3068 0.5580 31 1 1.2841 -5.4281 0.3710 32 1 2.0599 -5.4101 -1.2705 33 1 3.4003 -4.5253 2.4365 34 1 2.7265 -6.1779 2.2476 35 1 5.5957 -5.3009 2.4889 36 1 4.8520 -6.8628 2.9303 37 1 7.8217 -6.9912 3.6437 38 1 3.6939 -7.3678 -0.2019 39 1 4.7496 -6.2225 -1.0852 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072644607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:05 Heat of formation + Delta-G solvation = 82.916184 kcal Electronic energy + Delta-G solvation = -23034.808161 eV Core-core repulsion = 19685.778051 eV Total energy + Delta-G solvation = -3349.030110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 4.09 seconds Orbital eigenvalues (eV) -41.00087 -39.53451 -37.64490 -35.78039 -32.61813 -31.84279 -29.67093 -29.50323 -28.72119 -26.29935 -25.98914 -24.39619 -23.51711 -20.86979 -20.33898 -19.40622 -18.65740 -17.87961 -16.86790 -16.70778 -15.82931 -15.76297 -15.03745 -14.80189 -14.58636 -14.44635 -13.85418 -13.64944 -13.31170 -13.13982 -12.55278 -12.47935 -12.44016 -12.36198 -12.01420 -11.91390 -11.52610 -11.05779 -10.99189 -10.89942 -10.72983 -10.50279 -10.26592 -10.16314 -9.94830 -9.92769 -9.74215 -9.61374 -8.96262 -8.67023 -8.61508 -6.91827 -5.78408 -3.12508 0.24328 1.16986 1.55480 1.68932 2.74305 3.16745 3.35169 3.40891 3.42735 4.27811 4.31377 4.44096 4.55446 4.75961 4.85382 5.09975 5.16183 5.22492 5.37604 5.42839 5.48601 5.52582 5.57723 5.58850 5.70796 5.71860 5.77778 6.05597 6.06083 6.15046 6.37051 6.42656 6.47914 6.56976 6.62080 7.48157 7.53190 7.68316 7.75064 8.08076 8.17260 9.14182 9.74204 10.39192 11.33056 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.021243 B = 0.003563 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.795030 B = 7855.641515 C = 8698.376194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.165 3.835 3 N -0.474 5.474 4 S 0.286 5.714 5 C -0.173 4.173 6 C -0.207 4.207 7 C 0.612 3.388 8 O -0.537 6.537 9 N -0.636 5.636 10 C 0.111 3.889 11 C -0.104 4.104 12 C 0.123 3.877 13 C -0.117 4.117 14 C 0.179 3.821 15 N -0.605 5.605 16 C -0.230 4.230 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.154 3.846 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.198 0.802 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.253 0.747 38 H 0.028 0.972 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.901 11.179 -6.466 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.013 4.013 3 N -0.294 5.294 4 S 0.442 5.558 5 C -0.322 4.322 6 C -0.229 4.229 7 C 0.400 3.600 8 O -0.416 6.416 9 N -0.370 5.370 10 C -0.011 4.011 11 C -0.106 4.106 12 C 0.000 4.000 13 C -0.156 4.156 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.027 3.973 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.125 0.875 28 H 0.215 0.785 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.583 13.354 -6.256 17.063 hybrid contribution 0.367 -2.068 -0.058 2.101 sum -8.216 11.285 -6.314 15.321 Atomic orbital electron populations 1.20864 0.85415 1.04722 1.04285 1.21439 0.99529 0.86660 0.93656 1.76468 1.00407 1.26151 1.26414 1.84087 1.10561 0.95989 1.65191 1.27975 0.99944 1.04703 0.99561 1.20358 0.92199 0.95808 1.14500 1.16733 0.85325 0.81519 0.76399 1.90722 1.13284 1.85970 1.51632 1.49608 1.09344 1.06523 1.71484 1.23104 0.81469 0.95136 1.01397 1.22184 0.94750 0.95366 0.98254 1.22808 0.98404 0.77693 1.01071 1.22482 1.01001 1.00547 0.91544 1.21231 0.88237 0.96673 0.88416 1.44543 1.14558 1.68206 1.05832 1.19044 0.90574 1.30067 0.96154 0.90365 1.24794 0.98708 1.01080 0.95703 1.69954 1.35384 1.50505 1.01003 0.86132 0.83731 0.79005 0.76949 1.21608 1.21684 1.20678 1.21141 0.90020 0.93055 0.93107 0.89721 0.90921 0.87493 0.78488 0.89088 0.89993 0.90069 0.89458 0.92111 0.91611 0.93524 0.93729 0.93705 0.95418 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.45 36.01 0.34 -0.69 16 2 C 0.16 2.14 6.75 -83.20 -0.56 1.58 16 3 N -0.47 -6.15 11.97 32.50 0.39 -5.76 16 4 S 0.29 3.07 23.69 -107.50 -2.55 0.52 16 5 C -0.17 -1.94 10.47 30.61 0.32 -1.62 16 6 C -0.21 -2.72 5.86 -105.95 -0.62 -3.34 16 7 C 0.61 8.97 8.00 -12.56 -0.10 8.87 16 8 O -0.54 -8.91 14.59 5.26 0.08 -8.84 16 9 N -0.64 -8.63 3.69 -187.01 -0.69 -9.32 16 10 C 0.11 1.44 6.13 -7.32 -0.04 1.40 16 11 C -0.10 -1.55 1.06 -155.22 -0.16 -1.71 16 12 C 0.12 1.58 8.03 -7.46 -0.06 1.52 16 13 C -0.12 -2.00 6.40 -25.61 -0.16 -2.17 16 14 C 0.18 4.00 5.39 -2.83 -0.02 3.99 16 15 N -0.60 -14.08 3.41 -170.54 -0.58 -14.66 16 16 C -0.23 -5.99 10.28 -15.06 -0.15 -6.15 16 17 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -25.82 10.30 55.49 0.57 -25.25 16 20 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 C 0.15 2.74 6.70 -3.22 -0.02 2.72 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.11 1.32 5.76 -51.92 -0.30 1.02 16 28 H 0.20 1.96 4.78 -52.49 -0.25 1.70 16 29 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 30 H 0.08 1.05 6.23 -51.93 -0.32 0.73 16 31 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 1.16 7.38 -51.93 -0.38 0.77 16 36 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 37 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.04 0.72 8.00 -51.93 -0.42 0.31 16 LS Contribution 329.32 15.07 4.96 4.96 Total: -1.00 -30.36 329.32 -9.17 -39.53 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.98 Total: -1.42 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.34 Total: 4.12 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.31 Total: -54.99 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.55 Total: 0.52 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.36 -9.17 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072644607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.445 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.10 seconds