Wall clock time and date at job start Tue Mar 31 2020 09:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46966 * 2 1 4 4 C 1.52998 * 109.47774 * 239.99337 * 2 1 3 5 5 N 1.46501 * 109.46863 * 119.99256 * 2 1 3 6 6 C 1.35808 * 124.94680 * 0.02711 * 5 2 1 7 7 C 1.36679 * 108.40536 * 179.97438 * 6 5 2 8 8 C 1.43199 * 126.85741 * 180.02562 * 7 6 5 9 9 N 6.05075 * 87.58673 * 120.01069 * 2 1 3 10 10 C 1.46679 * 106.27915 * 359.76308 * 7 6 5 11 11 C 1.35248 * 106.44999 * 0.39338 * 10 7 6 12 12 N 1.39655 * 125.61770 * 179.86485 * 11 10 7 13 13 C 1.34777 * 120.00158 * 359.69843 * 12 11 10 14 14 O 1.21292 * 119.99984 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.46853 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99846 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99637 * 180.02562 * 17 16 15 20 20 N 1.31633 * 119.99688 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00457 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47357 * 89.99660 * 21 19 17 23 23 H 1.48495 * 109.47496 * 209.99879 * 21 19 17 24 24 H 1.48500 * 109.46916 * 330.00121 * 21 19 17 25 25 H 1.08998 * 109.47386 * 300.00680 * 1 2 3 26 26 H 1.09001 * 109.46731 * 60.00652 * 1 2 3 27 27 H 1.09002 * 109.46811 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46839 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46863 * 299.99266 * 3 2 1 30 30 H 1.08996 * 109.47744 * 59.98931 * 3 2 1 31 31 H 1.08999 * 109.46573 * 300.00283 * 4 2 1 32 32 H 1.08998 * 109.46732 * 59.99709 * 4 2 1 33 33 H 1.08992 * 109.47074 * 180.02562 * 4 2 1 34 34 H 1.07996 * 125.79836 * 0.02562 * 6 5 2 35 35 H 1.07995 * 126.77743 * 180.29672 * 10 7 6 36 36 H 0.96999 * 119.99794 * 179.69337 * 12 11 10 37 37 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 38 38 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 39 39 H 0.97002 * 120.00245 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0402 -0.7214 -1.2491 5 7 2.0183 -0.6905 1.1963 6 6 1.2280 -1.2430 2.1526 7 6 2.0316 -1.7961 3.1100 8 6 1.6098 -2.4811 4.2946 9 7 1.2752 -3.0237 5.2349 10 6 3.4123 -1.5533 2.6783 11 6 3.3349 -0.8727 1.5121 12 7 4.4218 -0.4339 0.7529 13 6 5.6792 -0.6766 1.1730 14 8 5.8668 -1.2757 2.2108 15 6 6.8520 -0.2035 0.3533 16 16 8.3932 -0.6775 1.1757 17 6 9.5636 -0.0200 0.0346 18 1 9.2233 0.4915 -0.8536 19 6 10.9232 -0.1602 0.2768 20 7 11.7976 0.3315 -0.5754 21 14 11.5119 -1.0466 1.8120 22 1 11.6675 -2.4941 1.5190 23 1 12.8188 -0.4846 2.2377 24 1 10.5174 -0.8661 2.8999 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9565 0.8898 31 1 1.6768 -1.7490 -1.2489 32 1 1.6768 -0.2076 -2.1391 33 1 3.1301 -0.7217 -1.2487 34 1 0.1481 -1.2458 2.1556 35 1 4.3129 -1.8566 3.1914 36 1 4.2717 0.0455 -0.0769 37 1 6.8121 -0.6604 -0.6355 38 1 6.8122 0.8812 0.2543 39 1 12.7477 0.2338 -0.4061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107905505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:01 Heat of formation + Delta-G solvation = 48.075528 kcal Electronic energy + Delta-G solvation = -22322.918017 eV Core-core repulsion = 18972.377103 eV Total energy + Delta-G solvation = -3350.540914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03309 -39.37270 -37.12778 -36.00973 -34.67226 -32.50263 -30.43172 -30.31505 -28.39990 -27.99292 -27.35006 -25.67710 -23.27718 -22.38164 -20.50915 -19.81535 -18.34992 -17.75491 -16.71997 -16.19342 -15.92599 -15.66909 -15.24279 -15.04065 -14.63789 -14.12013 -14.03063 -13.93127 -13.60471 -13.46035 -13.31553 -12.96574 -12.85477 -12.72875 -12.62313 -12.43336 -12.40429 -12.35154 -11.83974 -11.67344 -11.51829 -11.32877 -11.05535 -10.72706 -10.60417 -9.92324 -9.61642 -9.06242 -8.73783 -8.60319 -7.78148 -7.00645 -6.35134 -4.08361 1.53226 2.04901 2.13503 2.64993 2.81453 2.97071 3.11084 3.29811 3.46589 3.50538 3.70069 3.90808 4.15053 4.22524 4.27273 4.31073 4.52314 4.55601 4.88871 4.91751 4.98692 5.04133 5.04464 5.12452 5.13438 5.16174 5.36782 5.40450 5.50934 5.57253 5.61480 5.63671 5.82369 5.90761 6.05824 6.49175 6.80173 7.08141 7.38980 7.69251 7.87556 8.18360 8.34646 9.10709 10.73922 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.017981 B = 0.003483 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.811328 B = 8036.648526 C = 9397.087684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 C -0.165 4.165 4 C -0.165 4.165 5 N -0.444 5.444 6 C 0.062 3.938 7 C -0.119 4.119 8 C 0.299 3.701 9 N -0.448 5.448 10 C -0.163 4.163 11 C 0.261 3.739 12 N -0.656 5.656 13 C 0.535 3.465 14 O -0.486 6.486 15 C -0.122 4.122 16 S -0.132 6.132 17 C -0.525 4.525 18 H 0.089 0.911 19 C 0.097 3.903 20 N -0.879 5.879 21 Si 0.855 3.145 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.234 1.234 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.406 0.594 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.473 2.376 -3.960 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.064 3.936 3 C -0.223 4.223 4 C -0.223 4.223 5 N -0.127 5.127 6 C -0.073 4.073 7 C -0.131 4.131 8 C -0.016 4.016 9 N -0.125 5.125 10 C -0.191 4.191 11 C 0.059 3.941 12 N -0.307 5.307 13 C 0.321 3.679 14 O -0.357 6.357 15 C -0.273 4.273 16 S 0.094 5.906 17 C -0.672 4.672 18 H 0.107 0.893 19 C -0.112 4.112 20 N -0.515 5.515 21 Si 0.680 3.320 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.158 1.158 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.195 0.805 35 H 0.194 0.806 36 H 0.244 0.756 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.478 0.769 -1.171 24.518 hybrid contribution 0.377 0.922 -1.666 1.941 sum -24.101 1.692 -2.836 24.326 Atomic orbital electron populations 1.22144 0.91642 1.03669 1.03971 1.21000 0.96158 0.92725 0.83714 1.22314 1.02108 0.93874 1.03973 1.22311 1.02108 1.01669 0.96177 1.43990 1.03849 1.45606 1.19228 1.21522 0.96247 1.00493 0.89031 1.16107 0.93949 1.09753 0.93254 1.24677 0.92808 0.92180 0.91891 1.81231 1.08634 1.11401 1.11260 1.22309 0.95856 1.05192 0.95732 1.17005 0.78675 1.03902 0.94470 1.43284 1.03645 1.58269 1.25495 1.20396 0.82170 0.79052 0.86252 1.90652 1.84008 1.37962 1.23062 1.23255 0.96360 1.05044 1.02601 1.84881 0.95306 1.76616 1.33769 1.22289 0.92312 1.42905 1.09710 0.89282 1.24701 0.95542 0.94266 0.96681 1.69931 1.02156 1.43752 1.35651 0.86753 0.80163 0.80731 0.84336 1.19121 1.19854 1.15840 0.91026 0.90011 0.91026 0.91731 0.89985 0.91018 0.91019 0.89983 0.91730 0.80528 0.80594 0.75604 0.88039 0.88000 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 7.31 37.16 0.27 -0.23 16 2 C 0.15 0.79 1.05 -131.82 -0.14 0.65 16 3 C -0.16 -0.83 8.45 37.16 0.31 -0.52 16 4 C -0.16 -0.83 8.45 37.16 0.31 -0.52 16 5 N -0.44 -3.76 2.60 -101.88 -0.26 -4.03 16 6 C 0.06 0.53 10.24 -16.36 -0.17 0.36 16 7 C -0.12 -1.41 6.12 -105.13 -0.64 -2.05 16 8 C 0.30 4.04 15.87 -22.47 -0.36 3.69 16 9 N -0.45 -6.94 18.54 41.84 0.78 -6.16 16 10 C -0.16 -2.29 9.89 -37.24 -0.37 -2.65 16 11 C 0.26 3.09 6.92 -152.05 -1.05 2.04 16 12 N -0.66 -7.65 4.63 -11.30 -0.05 -7.71 16 13 C 0.53 8.52 7.81 -10.98 -0.09 8.43 16 14 O -0.49 -9.44 12.94 5.55 0.07 -9.37 16 15 C -0.12 -2.11 6.16 36.01 0.22 -1.88 16 16 S -0.13 -3.14 18.55 -107.50 -1.99 -5.13 16 17 C -0.52 -14.43 10.04 30.94 0.31 -14.12 16 18 H 0.09 2.54 8.03 -52.49 -0.42 2.12 16 19 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 20 N -0.88 -25.79 13.97 55.49 0.78 -25.02 16 21 Si 0.86 21.16 27.74 -169.99 -4.72 16.45 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.23 -5.77 6.74 56.52 0.38 -5.39 16 25 H 0.07 0.22 7.79 -51.93 -0.40 -0.18 16 26 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.07 0.22 7.79 -51.93 -0.40 -0.18 16 28 H 0.06 0.39 5.74 -51.93 -0.30 0.09 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.39 5.74 -51.93 -0.30 0.09 16 34 H 0.18 0.91 6.99 -52.49 -0.37 0.54 16 35 H 0.18 2.94 5.80 -52.49 -0.30 2.63 16 36 H 0.41 3.48 4.74 -40.82 -0.19 3.29 16 37 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.10 1.60 8.14 -51.92 -0.42 1.17 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -33.93 341.64 -6.54 -40.47 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.81 Total: -0.49 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -1.48 Total: -4.16 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 1.23 Total: -42.91 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.07 Total: -9.37 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.72 Total: 16.45 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -1.99 Total: -5.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.93 -6.54 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107905505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.545 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds