Wall clock time and date at job start Tue Mar 31 2020 09:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46966 * 2 1 4 4 C 1.52998 * 109.47774 * 239.99337 * 2 1 3 5 5 N 1.46501 * 109.46863 * 119.99256 * 2 1 3 6 6 C 1.35808 * 124.94680 * 0.02711 * 5 2 1 7 7 C 1.36679 * 108.40536 * 179.97438 * 6 5 2 8 8 C 1.43199 * 126.85741 * 180.02562 * 7 6 5 9 9 N 6.05075 * 87.58673 * 120.01069 * 2 1 3 10 10 C 1.46679 * 106.27915 * 359.76308 * 7 6 5 11 11 C 1.35248 * 106.44999 * 0.39338 * 10 7 6 12 12 N 1.39655 * 125.61770 * 179.86485 * 11 10 7 13 13 C 1.34777 * 120.00158 * 359.69843 * 12 11 10 14 14 O 1.21292 * 119.99984 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.46853 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99846 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99637 * 180.02562 * 17 16 15 20 20 N 1.31633 * 119.99688 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00457 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47357 * 89.99660 * 21 19 17 23 23 H 1.48495 * 109.47496 * 209.99879 * 21 19 17 24 24 H 1.48500 * 109.46916 * 330.00121 * 21 19 17 25 25 H 1.08998 * 109.47386 * 300.00680 * 1 2 3 26 26 H 1.09001 * 109.46731 * 60.00652 * 1 2 3 27 27 H 1.09002 * 109.46811 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46839 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46863 * 299.99266 * 3 2 1 30 30 H 1.08996 * 109.47744 * 59.98931 * 3 2 1 31 31 H 1.08999 * 109.46573 * 300.00283 * 4 2 1 32 32 H 1.08998 * 109.46732 * 59.99709 * 4 2 1 33 33 H 1.08992 * 109.47074 * 180.02562 * 4 2 1 34 34 H 1.07996 * 125.79836 * 0.02562 * 6 5 2 35 35 H 1.07995 * 126.77743 * 180.29672 * 10 7 6 36 36 H 0.96999 * 119.99794 * 179.69337 * 12 11 10 37 37 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 38 38 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 39 39 H 0.97002 * 120.00245 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0402 -0.7214 -1.2491 5 7 2.0183 -0.6905 1.1963 6 6 1.2280 -1.2430 2.1526 7 6 2.0316 -1.7961 3.1100 8 6 1.6098 -2.4811 4.2946 9 7 1.2752 -3.0237 5.2349 10 6 3.4123 -1.5533 2.6783 11 6 3.3349 -0.8727 1.5121 12 7 4.4218 -0.4339 0.7529 13 6 5.6792 -0.6766 1.1730 14 8 5.8668 -1.2757 2.2108 15 6 6.8520 -0.2035 0.3533 16 16 8.3932 -0.6775 1.1757 17 6 9.5636 -0.0200 0.0346 18 1 9.2233 0.4915 -0.8536 19 6 10.9232 -0.1602 0.2768 20 7 11.7976 0.3315 -0.5754 21 14 11.5119 -1.0466 1.8120 22 1 11.6675 -2.4941 1.5190 23 1 12.8188 -0.4846 2.2377 24 1 10.5174 -0.8661 2.8999 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9565 0.8898 31 1 1.6768 -1.7490 -1.2489 32 1 1.6768 -0.2076 -2.1391 33 1 3.1301 -0.7217 -1.2487 34 1 0.1481 -1.2458 2.1556 35 1 4.3129 -1.8566 3.1914 36 1 4.2717 0.0455 -0.0769 37 1 6.8121 -0.6604 -0.6355 38 1 6.8122 0.8812 0.2543 39 1 12.7477 0.2338 -0.4061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107905505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:00 Heat of formation + Delta-G solvation = 27.557258 kcal Electronic energy + Delta-G solvation = -22323.807756 eV Core-core repulsion = 18972.377103 eV Total energy + Delta-G solvation = -3351.430653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.87455 -40.58079 -37.88143 -36.88413 -35.82519 -34.65782 -31.62874 -31.17688 -29.09552 -28.35609 -28.07833 -27.78992 -24.10341 -23.36374 -21.48510 -20.82900 -19.80183 -18.96050 -17.86001 -17.13381 -16.98462 -16.91964 -16.65330 -16.10986 -15.81151 -15.33776 -14.96995 -14.84014 -14.82268 -14.46722 -14.42330 -14.29354 -13.80205 -13.71923 -13.34498 -13.18691 -13.07564 -13.01432 -12.93568 -12.72540 -12.71583 -12.66935 -12.16023 -11.95005 -11.86661 -11.61907 -11.16126 -10.94073 -10.52722 -9.61512 -9.00282 -8.71813 -8.50702 -6.21055 0.68725 0.87134 0.98715 1.27396 1.32555 1.49774 1.63279 1.77823 1.83860 2.13597 2.25404 2.68377 2.68479 2.88237 3.25904 3.57778 3.62578 3.78020 3.88568 3.95179 4.20033 4.38532 4.43054 4.55708 4.57122 4.69445 4.75553 4.79273 4.81598 4.90543 4.96477 5.01853 5.19685 5.26384 5.31629 5.60589 5.72068 5.82182 6.13549 6.25029 6.39128 6.66036 6.95081 7.00903 8.61411 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.017981 B = 0.003483 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.811328 B = 8036.648526 C = 9397.087684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 C -0.166 4.166 4 C -0.166 4.166 5 N -0.432 5.432 6 C 0.107 3.893 7 C -0.149 4.149 8 C 0.317 3.683 9 N -0.492 5.492 10 C -0.192 4.192 11 C 0.254 3.746 12 N -0.632 5.632 13 C 0.539 3.461 14 O -0.526 6.526 15 C -0.106 4.106 16 S -0.170 6.170 17 C -0.527 4.527 18 H 0.068 0.932 19 C 0.048 3.952 20 N -0.916 5.916 21 Si 0.909 3.091 22 H -0.264 1.264 23 H -0.261 1.261 24 H -0.236 1.236 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.051 0.949 34 H 0.222 0.778 35 H 0.142 0.858 36 H 0.423 0.577 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.460 3.164 -5.286 28.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.060 3.940 3 C -0.224 4.224 4 C -0.224 4.224 5 N -0.113 5.113 6 C -0.030 4.030 7 C -0.161 4.161 8 C 0.004 3.996 9 N -0.170 5.170 10 C -0.220 4.220 11 C 0.052 3.948 12 N -0.284 5.284 13 C 0.325 3.675 14 O -0.400 6.400 15 C -0.257 4.257 16 S 0.056 5.944 17 C -0.674 4.674 18 H 0.086 0.914 19 C -0.158 4.158 20 N -0.554 5.554 21 Si 0.732 3.268 22 H -0.188 1.188 23 H -0.186 1.186 24 H -0.160 1.160 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.238 0.762 35 H 0.160 0.840 36 H 0.265 0.735 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -27.499 1.588 -2.547 27.663 hybrid contribution 1.123 0.754 -1.397 1.944 sum -26.376 2.341 -3.943 26.772 Atomic orbital electron populations 1.22208 0.89268 1.04531 1.05364 1.21396 0.97936 0.92518 0.82195 1.22360 1.01303 0.93678 1.05047 1.22358 1.01302 1.01777 0.96946 1.44301 1.02324 1.44669 1.19991 1.22154 0.97668 0.96462 0.86751 1.16077 0.93565 1.12255 0.94166 1.24899 0.91762 0.91278 0.91680 1.81235 1.10045 1.13182 1.12527 1.22071 0.95929 1.06930 0.97110 1.16792 0.79971 1.04002 0.94027 1.42837 1.02404 1.57320 1.25792 1.20056 0.83107 0.78787 0.85502 1.90676 1.84742 1.39941 1.24684 1.23200 0.93238 1.06497 1.02796 1.84847 0.98378 1.76855 1.34276 1.22455 0.93356 1.42068 1.09544 0.91421 1.25494 0.95934 0.95086 0.99243 1.70007 1.02704 1.45310 1.37405 0.85936 0.79978 0.79738 0.81182 1.18837 1.18580 1.16013 0.90419 0.87997 0.90417 0.93002 0.87491 0.91457 0.91459 0.87490 0.93002 0.76204 0.84034 0.73539 0.85937 0.85908 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.21 7.31 71.98 0.53 0.32 16 2 C 0.14 0.94 1.05 3.60 0.00 0.94 16 3 C -0.17 -1.05 8.45 71.98 0.61 -0.44 16 4 C -0.17 -1.05 8.45 71.98 0.61 -0.44 16 5 N -0.43 -6.03 2.60 -476.23 -1.24 -7.26 16 6 C 0.11 1.47 10.24 83.71 0.86 2.33 16 7 C -0.15 -3.40 6.12 -20.19 -0.12 -3.53 16 8 C 0.32 8.56 15.87 88.33 1.40 9.96 16 9 N -0.49 -15.42 18.54 19.00 0.35 -15.07 16 10 C -0.19 -5.45 9.89 23.79 0.24 -5.22 16 11 C 0.25 5.68 6.92 130.63 0.90 6.58 16 12 N -0.63 -13.84 4.63 -308.05 -1.43 -15.27 16 13 C 0.54 16.90 7.81 87.66 0.68 17.59 16 14 O -0.53 -20.95 12.94 -3.07 -0.04 -20.99 16 15 C -0.11 -3.57 6.16 71.24 0.44 -3.13 16 16 S -0.17 -8.12 18.55 -56.49 -1.05 -9.17 16 17 C -0.53 -29.29 10.04 67.96 0.68 -28.61 16 18 H 0.07 3.93 8.03 -2.91 -0.02 3.90 16 19 C 0.05 2.74 5.50 84.86 0.47 3.21 16 20 N -0.92 -54.48 13.97 21.65 0.30 -54.18 16 21 Si 0.91 44.08 27.74 68.60 1.90 45.98 16 22 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.24 -11.43 6.74 99.48 0.67 -10.76 16 25 H 0.08 0.06 7.79 -2.39 -0.02 0.04 16 26 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.08 0.06 7.79 -2.39 -0.02 0.04 16 28 H 0.05 0.46 5.74 -2.39 -0.01 0.45 16 29 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.05 0.46 5.74 -2.39 -0.01 0.45 16 34 H 0.22 1.11 6.99 -2.91 -0.02 1.09 16 35 H 0.14 5.07 5.80 -2.91 -0.02 5.05 16 36 H 0.42 6.25 4.74 -92.71 -0.44 5.81 16 37 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 38 H 0.12 3.64 8.14 -2.40 -0.02 3.62 16 39 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -77.29 341.64 6.71 -70.57 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.61 Total: 5.80 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 7.29 Total: -0.42 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -2.01 Total: -91.78 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.04 Total: -20.99 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.90 Total: 45.98 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.05 Total: -9.17 kcal Total: -77.29 6.71 -70.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107905505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.132 kcal (2) G-P(sol) polarization free energy of solvation -77.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds