Wall clock time and date at job start Tue Mar 31 2020 08:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46727 * 98.70913 * 3 2 1 5 5 C 1.36938 * 119.99884 * 263.90890 * 4 3 2 6 6 H 1.08003 * 120.00335 * 199.38941 * 5 4 3 7 7 C 1.38817 * 119.99773 * 19.39542 * 5 4 3 8 8 N 1.31615 * 120.00281 * 22.27628 * 7 5 4 9 9 Si 1.86801 * 119.99709 * 202.27850 * 7 5 4 10 10 H 1.48506 * 109.47430 * 59.99992 * 9 7 5 11 11 H 1.48505 * 109.46943 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47139 * 299.99887 * 9 7 5 13 13 C 1.46496 * 120.00445 * 83.91569 * 4 3 2 14 14 C 1.50700 * 109.47294 * 89.99506 * 13 4 3 15 15 O 1.21281 * 119.99966 * 0.02562 * 14 13 4 16 16 N 1.34783 * 119.99859 * 180.02562 * 14 13 4 17 17 C 1.39002 * 119.99590 * 179.97438 * 16 14 13 18 18 N 1.29624 * 124.94024 * 179.97438 * 17 16 14 19 19 C 1.31989 * 116.91522 * 180.02562 * 18 17 16 20 20 C 1.50703 * 122.71378 * 180.02562 * 19 18 17 21 21 C 1.53008 * 109.46938 * 269.96162 * 20 19 18 22 22 C 1.33435 * 114.57205 * 0.02562 * 19 18 17 23 23 C 1.50694 * 125.97224 * 179.97438 * 22 19 18 24 24 S 1.70969 * 124.94737 * 0.32083 * 17 16 14 25 25 H 4.40637 * 5.51446 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47591 * 338.70776 * 3 2 1 27 27 H 1.08993 * 109.47066 * 218.70229 * 3 2 1 28 28 H 0.97000 * 119.99718 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46747 * 329.99548 * 13 4 3 30 30 H 1.09000 * 109.47483 * 209.99595 * 13 4 3 31 31 H 0.96994 * 119.99705 * 0.02562 * 16 14 13 32 32 H 1.09003 * 109.47077 * 29.95553 * 20 19 18 33 33 H 1.08994 * 109.47190 * 149.95852 * 20 19 18 34 34 H 1.09003 * 109.46739 * 299.99598 * 21 20 19 35 35 H 1.08994 * 109.47434 * 59.99839 * 21 20 19 36 36 H 1.09002 * 109.47101 * 180.02562 * 21 20 19 37 37 H 1.09007 * 109.47206 * 90.00440 * 23 22 19 38 38 H 1.09001 * 109.47268 * 330.00583 * 23 22 19 39 39 H 1.09003 * 109.47634 * 210.00087 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.2100 -1.3653 5 6 3.4814 -0.8641 -2.1405 6 1 4.1197 -0.7255 -3.0006 7 6 3.0129 -2.1311 -1.8209 8 7 1.9285 -2.2661 -1.0873 9 14 3.9216 -3.6445 -2.4320 10 1 5.3110 -3.6330 -1.9078 11 1 3.2239 -4.8663 -1.9567 12 1 3.9526 -3.6374 -3.9166 13 6 3.2509 1.5684 -1.9014 14 6 4.6229 2.1124 -1.5969 15 8 5.4244 1.4322 -0.9921 16 7 4.9591 3.3549 -1.9966 17 6 6.2244 3.8568 -1.7153 18 7 6.6481 5.0343 -2.0535 19 6 7.8817 5.3483 -1.7047 20 6 8.5059 6.6808 -2.0301 21 6 9.2067 6.5978 -3.3878 22 6 8.5315 4.3905 -1.0406 23 6 9.9445 4.4743 -0.5237 24 16 7.4513 3.0081 -0.8801 25 1 -1.0501 0.0002 0.0001 26 1 3.0098 -0.9567 0.3732 27 1 3.0089 0.8028 0.6425 28 1 1.6014 -3.1515 -0.8637 29 1 2.4965 2.2066 -1.4411 30 1 3.0997 1.5474 -2.9806 31 1 4.3179 3.8990 -2.4800 32 1 7.7304 7.4458 -2.0679 33 1 9.2336 6.9388 -1.2608 34 1 9.9823 5.8328 -3.3500 35 1 8.4790 6.3398 -4.1571 36 1 9.6586 7.5614 -3.6230 37 1 9.9374 4.8750 0.4900 38 1 10.5293 5.1297 -1.1692 39 1 10.3890 3.4791 -0.5179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281262218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:58 Heat of formation + Delta-G solvation = 90.604609 kcal Electronic energy + Delta-G solvation = -22293.621206 eV Core-core repulsion = 18944.924492 eV Total energy + Delta-G solvation = -3348.696714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18054 -39.27512 -36.03388 -35.00274 -33.09581 -31.66386 -31.53275 -31.29334 -27.96248 -26.38579 -25.93809 -24.08004 -23.31315 -21.91272 -20.72062 -19.09279 -17.83354 -17.59951 -16.78777 -16.52176 -16.05664 -15.52805 -15.05162 -14.68663 -14.23668 -14.01446 -13.89145 -13.58329 -13.44006 -13.06878 -12.93566 -12.71686 -12.48020 -12.42228 -11.97180 -11.61287 -11.45379 -11.19827 -11.09611 -10.82858 -10.77095 -10.38173 -10.34178 -10.10776 -9.57948 -9.51653 -9.05255 -8.87813 -8.85373 -8.54249 -7.89247 -7.18937 -5.90220 -3.33823 0.96321 1.38008 2.10114 2.63867 2.90215 3.24157 3.35623 3.41667 3.45296 4.05250 4.29182 4.46325 4.55405 4.93717 5.05194 5.16470 5.21947 5.26799 5.34486 5.34822 5.47917 5.49293 5.71096 5.74533 5.77360 5.79725 5.87976 5.96093 6.06291 6.07545 6.19949 6.51599 6.60151 7.10330 7.22433 7.31224 7.65822 8.00357 8.10307 8.32681 8.95307 9.08989 9.60187 10.03301 11.12990 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.003477 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.312183 B = 8051.376064 C = 8693.146257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.101 4.101 3 C 0.269 3.731 4 N -0.555 5.555 5 C -0.273 4.273 6 H 0.074 0.926 7 C 0.013 3.987 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.140 3.860 14 C 0.473 3.527 15 O -0.483 6.483 16 N -0.633 5.633 17 C 0.253 3.747 18 N -0.523 5.523 19 C 0.087 3.913 20 C -0.045 4.045 21 C -0.144 4.144 22 C -0.302 4.302 23 C -0.064 4.064 24 S 0.239 5.761 25 H 0.192 0.808 26 H 0.096 0.904 27 H 0.039 0.961 28 H 0.257 0.743 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.418 0.582 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.258 15.335 -0.080 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.103 4.103 3 C 0.144 3.856 4 N -0.271 5.271 5 C -0.402 4.402 6 H 0.092 0.908 7 C -0.187 4.187 8 N -0.523 5.523 9 Si 0.731 3.269 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.208 1.208 13 C 0.006 3.994 14 C 0.257 3.743 15 O -0.353 6.353 16 N -0.286 5.286 17 C -0.114 4.114 18 N -0.247 5.247 19 C -0.046 4.046 20 C -0.085 4.085 21 C -0.202 4.202 22 C -0.424 4.424 23 C -0.123 4.123 24 S 0.490 5.510 25 H 0.209 0.791 26 H 0.114 0.886 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.256 0.744 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.308 13.809 0.573 17.242 hybrid contribution 0.036 0.194 -0.928 0.949 sum 10.345 14.003 -0.355 17.413 Atomic orbital electron populations 1.24196 0.95314 1.07385 1.04081 1.24102 0.95119 0.94535 0.96587 1.17707 0.82814 1.00245 0.84798 1.43639 1.72855 0.99425 1.11204 1.19053 1.25303 0.85562 1.10235 0.90848 1.24902 0.95853 0.98182 0.99768 1.70128 1.18954 1.22497 1.40694 0.86383 0.79846 0.82202 0.78454 1.20736 1.21585 1.20827 1.20643 0.89089 0.89008 1.00631 1.24463 0.93901 0.78271 0.77658 1.90580 1.50963 1.55829 1.37958 1.43744 1.10553 1.17405 1.56880 1.23547 0.93712 0.93558 1.00633 1.66196 1.15643 1.15558 1.27268 1.19578 0.88619 0.97633 0.98722 1.20053 0.98942 0.91715 0.97839 1.21704 1.00389 1.01506 0.96587 1.26111 1.03780 1.00506 1.12046 1.20063 0.89292 1.02415 1.00566 1.85137 1.01112 1.12599 1.52152 0.79084 0.88574 0.94296 0.93221 0.90144 0.88998 0.74395 0.90548 0.90559 0.92686 0.92400 0.92319 0.91351 0.91035 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.30 19.25 29.55 0.57 -5.73 16 2 C -0.10 -2.35 11.50 -37.12 -0.43 -2.77 16 3 C 0.27 6.25 5.41 -6.83 -0.04 6.21 16 4 N -0.56 -12.96 1.98 -177.95 -0.35 -13.31 16 5 C -0.27 -7.13 9.63 -15.06 -0.14 -7.28 16 6 H 0.07 1.91 7.92 -52.48 -0.42 1.49 16 7 C 0.01 0.36 4.82 -17.43 -0.08 0.27 16 8 N -0.88 -24.30 9.61 55.49 0.53 -23.77 16 9 Si 0.90 21.34 29.61 -169.99 -5.03 16.31 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.14 2.54 6.15 -5.20 -0.03 2.50 16 14 C 0.47 8.41 7.86 -10.98 -0.09 8.32 16 15 O -0.48 -10.22 13.90 5.56 0.08 -10.14 16 16 N -0.63 -9.47 5.40 -13.07 -0.07 -9.55 16 17 C 0.25 4.08 8.19 -87.35 -0.72 3.36 16 18 N -0.52 -8.13 10.58 -11.28 -0.12 -8.25 16 19 C 0.09 1.19 5.99 -84.20 -0.50 0.68 16 20 C -0.05 -0.46 5.86 -27.88 -0.16 -0.63 16 21 C -0.14 -1.31 9.90 37.16 0.37 -0.94 16 22 C -0.30 -4.01 6.58 -35.99 -0.24 -4.25 16 23 C -0.06 -0.62 9.80 36.00 0.35 -0.27 16 24 S 0.24 3.78 20.22 -107.50 -2.17 1.60 16 25 H 0.19 3.44 7.80 -54.09 -0.42 3.02 16 26 H 0.10 2.48 6.59 -51.93 -0.34 2.13 16 27 H 0.04 0.82 8.12 -51.93 -0.42 0.39 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 30 H 0.09 1.55 8.04 -51.93 -0.42 1.13 16 31 H 0.42 4.95 8.82 -40.82 -0.36 4.59 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.64 7.34 -51.93 -0.38 0.26 16 34 H 0.05 0.49 7.98 -51.93 -0.41 0.08 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.07 0.57 7.25 -51.93 -0.38 0.20 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -31.48 350.50 -8.22 -39.70 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.22 Total: 2.65 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.14 Total: -0.51 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.01 Total: -54.88 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -2.17 Total: 1.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.48 -8.22 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281262218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.300 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds