Wall clock time and date at job start Tue Mar 31 2020 08:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30937 * 122.90505 * 2 1 4 4 C 1.29435 * 117.36244 * 180.02562 * 3 2 1 5 5 S 1.70955 * 110.39127 * 359.72255 * 4 3 2 6 6 C 1.35670 * 122.90301 * 179.97438 * 2 1 3 7 7 C 1.46682 * 126.12932 * 359.97438 * 6 2 1 8 8 O 1.21691 * 120.00207 * 359.97438 * 7 6 2 9 9 N 1.34780 * 120.00027 * 180.02562 * 7 6 2 10 10 C 1.46496 * 119.99603 * 180.02562 * 9 7 6 11 11 H 1.08989 * 110.56458 * 36.92918 * 10 9 7 12 12 C 1.54852 * 110.62300 * 160.00454 * 10 9 7 13 13 C 1.57783 * 103.27774 * 117.96669 * 12 10 9 14 14 H 1.08993 * 115.64648 * 158.98247 * 13 12 10 15 15 C 1.55848 * 105.80207 * 289.03949 * 13 12 10 16 16 C 1.54229 * 103.56192 * 71.16020 * 15 13 12 17 17 C 1.55844 * 110.62638 * 274.02240 * 10 9 7 18 18 H 1.09001 * 115.55897 * 82.70314 * 17 10 9 19 19 N 1.50236 * 100.16231 * 33.70422 * 13 12 10 20 20 C 1.36932 * 130.84099 * 125.53077 * 19 13 12 21 21 H 1.08007 * 120.00274 * 179.97438 * 20 19 13 22 22 C 1.38816 * 119.99949 * 359.66169 * 20 19 13 23 23 N 1.31617 * 119.99814 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99955 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47078 * 60.00078 * 24 22 20 26 26 H 1.48504 * 109.46943 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46922 * 299.99553 * 24 22 20 28 28 H 1.09003 * 109.47046 * 270.00116 * 1 2 3 29 29 H 1.09002 * 109.47204 * 29.99793 * 1 2 3 30 30 H 1.09004 * 109.47631 * 150.00375 * 1 2 3 31 31 H 1.08002 * 124.80616 * 180.02562 * 4 3 2 32 32 H 0.97001 * 119.99627 * 359.97438 * 9 7 6 33 33 H 1.09008 * 110.62484 * 236.97649 * 12 10 9 34 34 H 1.09000 * 110.63003 * 359.83216 * 12 10 9 35 35 H 1.08993 * 110.62571 * 189.56193 * 15 13 12 36 36 H 1.09003 * 110.62538 * 312.58741 * 15 13 12 37 37 H 1.09002 * 110.64630 * 241.43916 * 16 15 13 38 38 H 1.09001 * 110.49439 * 118.49244 * 16 15 13 39 39 H 0.96994 * 119.99982 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2183 1.0993 0.0000 4 6 3.5066 0.9743 -0.0005 5 16 3.9447 -0.6781 0.0067 6 6 2.2439 -1.1391 0.0005 7 6 1.7190 -2.5088 0.0017 8 8 0.5172 -2.6998 0.0027 9 7 2.5678 -3.5557 0.0026 10 6 2.0435 -4.9236 0.0032 11 1 1.1450 -4.9895 -0.6103 12 6 3.1202 -5.9206 -0.4914 13 6 3.3409 -6.8632 0.7545 14 1 3.7787 -7.8375 0.5373 15 6 4.0853 -5.9974 1.8151 16 6 3.0066 -5.0038 2.2926 17 6 1.7509 -5.3988 1.4583 18 1 0.7931 -5.0837 1.8722 19 7 1.9502 -6.8818 1.3225 20 6 1.1216 -7.9282 1.6281 21 1 0.1397 -7.7383 2.0360 22 6 1.5410 -9.2330 1.4076 23 7 2.7350 -9.4642 0.9043 24 14 0.4104 -10.6605 1.8238 25 1 -0.8413 -10.5475 1.0328 26 1 1.0884 -11.9406 1.4966 27 1 0.0852 -10.6282 3.2724 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 4.2058 1.7974 -0.0002 32 1 3.5258 -3.4034 0.0021 33 1 2.7563 -6.4836 -1.3510 34 1 4.0433 -5.3970 -0.7400 35 1 4.4278 -6.6164 2.6443 36 1 4.9215 -5.4670 1.3595 37 1 3.3052 -3.9784 2.0749 38 1 2.8153 -5.1312 3.3581 39 1 3.0280 -10.3758 0.7499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095201630.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:42 Heat of formation + Delta-G solvation = 60.786454 kcal Electronic energy + Delta-G solvation = -23328.350276 eV Core-core repulsion = 19978.360550 eV Total energy + Delta-G solvation = -3349.989727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.49951 -39.66037 -38.13585 -34.06778 -32.39401 -31.98781 -29.61752 -29.09853 -28.51693 -27.13586 -25.20838 -24.24353 -22.21790 -21.19860 -19.74189 -19.41820 -18.61872 -18.42426 -17.14146 -16.55468 -15.89716 -15.53443 -14.91305 -14.75000 -14.65748 -14.06210 -13.80362 -13.74660 -13.69173 -12.64131 -12.60746 -12.33863 -12.21699 -11.83766 -11.53425 -11.47914 -11.07830 -10.96585 -10.91481 -10.84125 -10.23864 -10.17504 -10.12229 -9.89444 -9.74633 -9.73429 -9.44890 -9.26792 -9.06213 -8.94866 -8.57405 -6.94168 -5.74733 -3.12655 0.07727 0.99079 1.36360 2.31673 3.20817 3.28016 3.40203 3.44003 3.45306 3.94515 4.44040 4.79766 4.81633 5.00400 5.16365 5.35799 5.52539 5.59876 5.65109 5.74293 5.76297 5.81437 5.94414 6.02445 6.07254 6.18903 6.26499 6.30337 6.49295 6.55783 6.61299 6.76922 6.91413 6.95911 7.21583 7.36351 7.49664 7.63820 7.77537 8.13964 8.30705 9.08496 9.71047 10.50973 11.34925 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.029342 B = 0.003663 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.033081 B = 7642.282951 C = 8204.016435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.138 3.862 3 N -0.475 5.475 4 C 0.031 3.969 5 S 0.158 5.842 6 C -0.285 4.285 7 C 0.590 3.410 8 O -0.522 6.522 9 N -0.704 5.704 10 C 0.128 3.872 11 H 0.086 0.914 12 C -0.142 4.142 13 C 0.155 3.845 14 H 0.156 0.844 15 C -0.136 4.136 16 C -0.130 4.130 17 C 0.129 3.871 18 H 0.086 0.914 19 N -0.590 5.590 20 C -0.211 4.211 21 H 0.079 0.921 22 C -0.011 4.011 23 N -0.924 5.924 24 Si 0.917 3.083 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.205 0.795 32 H 0.392 0.608 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.635 18.045 -2.742 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.001 3.999 3 N -0.189 5.189 4 C -0.265 4.265 5 S 0.412 5.588 6 C -0.409 4.409 7 C 0.374 3.626 8 O -0.401 6.401 9 N -0.354 5.354 10 C 0.023 3.977 11 H 0.104 0.896 12 C -0.182 4.182 13 C 0.049 3.951 14 H 0.173 0.827 15 C -0.175 4.175 16 C -0.170 4.170 17 C 0.020 3.980 18 H 0.104 0.896 19 N -0.310 5.310 20 C -0.339 4.339 21 H 0.097 0.903 22 C -0.206 4.206 23 N -0.572 5.572 24 Si 0.748 3.252 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.221 0.779 32 H 0.227 0.773 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.474 17.547 -2.714 18.580 hybrid contribution -0.733 -0.331 0.263 0.846 sum 4.741 17.216 -2.452 18.025 Atomic orbital electron populations 1.20668 0.85870 1.04480 1.03808 1.20750 0.98827 0.84926 0.95423 1.66124 1.04901 1.31399 1.16472 1.28675 0.95317 1.00385 1.02114 1.83968 1.05868 1.03362 1.65571 1.25689 0.95923 0.99597 1.19720 1.16669 0.86437 0.82238 0.77221 1.90792 1.14169 1.84762 1.50337 1.46185 1.08902 1.06613 1.73720 1.22716 0.97537 0.77636 0.99812 0.89607 1.23626 0.95978 0.97472 1.01139 1.24167 0.85470 0.97703 0.87800 0.82723 1.22905 0.96386 0.97760 1.00472 1.22796 0.97490 0.97216 0.99490 1.23189 0.96102 0.86117 0.92600 0.89624 1.46491 1.13639 0.98529 1.72346 1.19027 0.95972 0.84051 1.34875 0.90328 1.24692 0.97169 0.97021 1.01755 1.69411 1.18257 1.19217 1.50331 0.86101 0.79555 0.81490 0.78070 1.21182 1.21572 1.21241 0.90078 0.90934 0.87971 0.77889 0.77327 0.91321 0.92911 0.92490 0.93627 0.93315 0.92920 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 9.69 36.00 0.35 -0.73 16 2 C 0.14 1.79 6.79 -83.89 -0.57 1.22 16 3 N -0.47 -5.62 10.50 -11.53 -0.12 -5.74 16 4 C 0.03 0.27 12.22 51.75 0.63 0.90 16 5 S 0.16 1.44 22.35 -107.50 -2.40 -0.96 16 6 C -0.29 -3.73 6.48 -37.09 -0.24 -3.97 16 7 C 0.59 9.26 7.77 -12.85 -0.10 9.16 16 8 O -0.52 -9.70 14.00 5.20 0.07 -9.63 16 9 N -0.70 -10.59 3.66 -52.70 -0.19 -10.78 16 10 C 0.13 2.37 3.08 -65.44 -0.20 2.17 16 11 H 0.09 1.75 7.70 -51.94 -0.40 1.35 16 12 C -0.14 -2.65 6.30 -23.14 -0.15 -2.79 16 13 C 0.16 3.43 4.77 -61.70 -0.29 3.13 16 14 H 0.16 3.91 5.52 -51.93 -0.29 3.62 16 15 C -0.14 -2.57 6.44 -24.57 -0.16 -2.73 16 16 C -0.13 -2.39 6.31 -24.57 -0.16 -2.55 16 17 C 0.13 2.68 5.29 -62.80 -0.33 2.35 16 18 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 19 N -0.59 -14.49 2.96 -144.64 -0.43 -14.92 16 20 C -0.21 -5.77 10.59 -15.06 -0.16 -5.93 16 21 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 23 N -0.92 -25.84 10.47 55.49 0.58 -25.26 16 24 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.10 1.39 6.01 -51.93 -0.31 1.08 16 31 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.39 5.01 7.24 -40.82 -0.30 4.72 16 33 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 34 H 0.05 0.82 7.43 -51.93 -0.39 0.44 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.73 7.91 -51.93 -0.41 0.32 16 37 H 0.05 0.78 6.56 -51.93 -0.34 0.44 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -30.67 327.46 -8.99 -39.66 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.94 Total: 6.07 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.47 Total: -0.17 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.16 Total: -56.70 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.40 Total: -0.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.67 -8.99 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095201630.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.443 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds