Wall clock time and date at job start Tue Mar 31 2020 08:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47329 * 2 1 4 4 C 1.50698 * 109.47095 * 119.99374 * 2 1 3 5 5 N 1.29034 * 124.91539 * 120.27759 * 4 2 1 6 6 C 1.31782 * 117.12183 * 180.23076 * 5 4 2 7 7 C 1.50705 * 122.74696 * 179.75375 * 6 5 4 8 8 C 1.50700 * 109.47106 * 264.73357 * 7 6 5 9 9 N 1.29940 * 126.29088 * 269.97928 * 8 7 6 10 10 O 1.21304 * 110.25582 * 179.72521 * 9 8 7 11 11 C 1.33647 * 109.80784 * 0.46474 * 10 9 8 12 12 C 1.50698 * 126.55199 * 179.79864 * 11 10 9 13 13 H 1.08998 * 109.47083 * 179.68695 * 12 11 10 14 14 C 1.53006 * 109.46561 * 59.69078 * 12 11 10 15 15 C 1.50697 * 109.46993 * 299.69279 * 12 11 10 16 16 H 1.07991 * 120.00449 * 359.72131 * 15 12 11 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 12 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 N 1.31126 * 106.89472 * 359.54097 * 11 10 9 24 24 C 1.33635 * 114.50506 * 359.48591 * 6 5 4 25 25 S 1.70983 * 124.92073 * 299.98174 * 4 2 1 26 26 H 1.08993 * 109.47214 * 300.00724 * 1 2 3 27 27 H 1.09000 * 109.46737 * 60.00047 * 1 2 3 28 28 H 1.08991 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47431 * 239.99480 * 2 1 3 30 30 H 1.09005 * 109.47606 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47172 * 299.99686 * 3 2 1 32 32 H 1.09001 * 109.47289 * 59.99393 * 3 2 1 33 33 H 1.09004 * 109.47132 * 144.73376 * 7 6 5 34 34 H 1.08999 * 109.46936 * 24.73272 * 7 6 5 35 35 H 1.08998 * 109.47109 * 299.99601 * 14 12 11 36 36 H 1.08994 * 109.47204 * 59.99959 * 14 12 11 37 37 H 1.09006 * 109.46531 * 179.97438 * 14 12 11 38 38 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 39 39 H 1.07997 * 126.04229 * 180.26910 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.7815 -1.7608 1.2228 6 6 3.1279 -2.2603 2.3921 7 6 3.9939 -3.4859 2.5307 8 6 3.1200 -4.7019 2.7001 9 7 2.6934 -5.1917 3.8254 10 8 2.0067 -6.1711 3.6237 11 6 1.9360 -6.4122 2.3111 12 6 1.1867 -7.5368 1.6441 13 1 1.3127 -7.4668 0.5637 14 6 -0.2999 -7.4358 1.9919 15 6 1.7274 -8.8574 2.1286 16 1 2.5360 -8.8801 2.8440 17 6 1.1931 -10.0367 1.6543 18 7 0.2080 -10.0090 0.7834 19 14 1.8684 -11.6737 2.2490 20 1 2.9663 -11.4331 3.2194 21 1 0.7849 -12.4461 2.9082 22 1 2.3912 -12.4433 1.0915 23 7 2.6387 -5.4798 1.7141 24 6 2.6530 -1.5878 3.4447 25 16 1.6981 -0.2366 2.8391 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 4.6393 -3.3780 3.4025 34 1 4.6069 -3.6006 1.6368 35 1 -0.4258 -7.5057 3.0723 36 1 -0.6909 -6.4806 1.6416 37 1 -0.8419 -8.2490 1.5091 38 1 -0.1680 -10.8387 0.4501 39 1 2.8243 -1.8297 4.4832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596586310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:17 Heat of formation + Delta-G solvation = 89.621950 kcal Electronic energy + Delta-G solvation = -22258.371952 eV Core-core repulsion = 18909.632626 eV Total energy + Delta-G solvation = -3348.739326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.73345 -40.06479 -36.15827 -35.26200 -34.79318 -32.42353 -31.06395 -29.56889 -27.98445 -27.50429 -25.38629 -25.13479 -23.40526 -22.62781 -21.14482 -20.20410 -19.59972 -17.66646 -17.34069 -16.67891 -16.03196 -15.87480 -15.11560 -14.96804 -14.66930 -14.20143 -13.88287 -13.75448 -13.27829 -13.03208 -12.85743 -12.67078 -12.47243 -11.92186 -11.84733 -11.76048 -11.53213 -11.51004 -11.21338 -11.15448 -11.03741 -10.70594 -10.60251 -10.38410 -10.27736 -10.05825 -9.70086 -9.49042 -9.45957 -8.90247 -8.80902 -8.57545 -6.21724 -4.30943 0.60671 1.24824 1.61451 1.98752 2.63930 3.03360 3.22905 3.31077 3.36480 3.80169 3.86234 4.26120 4.36984 4.54651 4.66429 4.77895 4.79855 5.05269 5.11385 5.22980 5.26533 5.27297 5.46264 5.50541 5.53754 5.66919 5.69550 5.88392 5.93138 5.96048 6.13334 6.53022 6.59373 6.69902 6.85171 6.88100 7.39205 7.62493 7.69774 7.80950 8.00848 8.68549 8.97935 9.35233 10.84533 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.024203 B = 0.003123 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.593196 B = 8962.658863 C = 9530.796882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.146 4.146 4 C 0.058 3.942 5 N -0.456 5.456 6 C 0.078 3.922 7 C 0.052 3.948 8 C 0.161 3.839 9 N -0.407 5.407 10 O 0.070 5.930 11 C 0.243 3.757 12 C 0.125 3.875 13 H 0.075 0.925 14 C -0.138 4.138 15 C -0.522 4.522 16 H 0.063 0.937 17 C 0.070 3.930 18 N -0.884 5.884 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.281 1.281 23 N -0.505 5.505 24 C -0.248 4.248 25 S 0.113 5.887 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.015 0.985 37 H 0.102 0.898 38 H 0.266 0.734 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 20.829 1.144 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.043 4.043 3 C -0.204 4.204 4 C -0.221 4.221 5 N -0.169 5.169 6 C -0.054 4.054 7 C 0.010 3.990 8 C -0.113 4.113 9 N -0.119 5.119 10 O 0.014 5.986 11 C 0.025 3.975 12 C 0.105 3.895 13 H 0.093 0.907 14 C -0.197 4.197 15 C -0.561 4.561 16 H 0.081 0.919 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.207 1.207 23 N -0.239 5.239 24 C -0.387 4.387 25 S 0.368 5.632 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.058 0.942 36 H 0.034 0.966 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.567 21.861 1.428 21.964 hybrid contribution 0.784 -1.881 0.445 2.086 sum 2.352 19.980 1.873 20.205 Atomic orbital electron populations 1.21930 0.93081 1.03050 1.02576 1.19841 0.96191 0.95301 0.92988 1.21919 1.01748 0.94102 1.02618 1.27112 0.99626 0.96534 0.98798 1.66092 1.12990 1.09619 1.28219 1.19842 1.00952 0.98044 0.86608 1.18229 0.92783 0.82830 1.05131 1.25260 1.01459 0.99411 0.85145 1.74491 1.11727 1.01503 1.24228 1.85242 1.50328 1.33795 1.29187 1.30189 0.92532 0.95391 0.79415 1.17828 0.90591 0.85346 0.95776 0.90727 1.21853 0.96817 1.00470 1.00518 1.20916 1.19446 0.88807 1.26929 0.91884 1.24887 0.94635 0.99372 0.94461 1.69864 1.24523 1.27880 1.29891 0.86326 0.79051 0.82757 0.78735 1.19566 1.20633 1.20709 1.71988 1.15273 1.06045 1.30565 1.26871 1.06489 1.00727 1.04644 1.83751 1.48838 1.28498 1.02111 0.92292 0.91069 0.91746 0.87870 0.92003 0.91131 0.92290 0.87811 0.87137 0.94217 0.96552 0.88003 0.92390 0.80435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.09 37.16 0.34 -0.92 16 2 C -0.02 -0.20 3.35 -91.77 -0.31 -0.51 16 3 C -0.15 -1.04 9.09 37.16 0.34 -0.71 16 4 C 0.06 0.74 6.03 -13.45 -0.08 0.66 16 5 N -0.46 -7.11 10.53 -8.05 -0.08 -7.20 16 6 C 0.08 1.19 5.98 -84.22 -0.50 0.68 16 7 C 0.05 0.80 6.25 -29.03 -0.18 0.62 16 8 C 0.16 3.22 7.45 -156.37 -1.17 2.05 16 9 N -0.41 -8.54 12.16 30.90 0.38 -8.16 16 10 O 0.07 1.59 11.31 18.09 0.20 1.80 16 11 C 0.24 5.73 6.96 -13.06 -0.09 5.64 16 12 C 0.12 3.12 2.77 -92.92 -0.26 2.86 16 13 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 14 C -0.14 -3.21 8.95 37.16 0.33 -2.88 16 15 C -0.52 -13.91 8.55 -34.44 -0.29 -14.21 16 16 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 17 C 0.07 1.83 5.31 -17.82 -0.09 1.74 16 18 N -0.88 -23.75 11.31 55.43 0.63 -23.12 16 19 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 N -0.51 -11.54 11.55 -9.87 -0.11 -11.65 16 24 C -0.25 -3.24 11.14 29.12 0.32 -2.92 16 25 S 0.11 1.25 22.53 -107.50 -2.42 -1.17 16 26 H 0.06 0.46 7.93 -51.93 -0.41 0.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 7.93 -51.93 -0.41 -0.02 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 2.53 6.06 -51.93 -0.31 2.21 16 38 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.18 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -29.60 348.60 -8.15 -37.76 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.33 Total: -1.10 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -1.64 Total: -7.91 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.80 Total: -50.14 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.20 Total: 1.80 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.42 Total: -1.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.60 -8.15 -37.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596586310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.380 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds