Wall clock time and date at job start Tue Mar 31 2020 09:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47173 * 281.70745 * 3 2 1 5 5 C 1.37108 * 119.99880 * 263.81774 * 4 3 2 6 6 H 1.07993 * 119.99843 * 142.47981 * 5 4 3 7 7 C 1.38945 * 119.99582 * 322.47985 * 5 4 3 8 8 N 1.31410 * 119.99677 * 157.62867 * 7 5 4 9 9 Si 1.86801 * 120.00245 * 337.62470 * 7 5 4 10 10 H 1.48498 * 109.47054 * 95.70756 * 9 7 5 11 11 H 1.48506 * 109.47072 * 215.71226 * 9 7 5 12 12 H 1.48501 * 109.47256 * 335.70713 * 9 7 5 13 13 C 1.34772 * 120.00290 * 83.81498 * 4 3 2 14 14 O 1.21291 * 120.00461 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99711 * 0.27579 * 13 4 3 16 16 C 1.52999 * 109.46999 * 179.72456 * 15 13 4 17 17 H 1.08998 * 109.47365 * 304.99978 * 16 15 13 18 18 C 1.53004 * 109.47352 * 65.00354 * 16 15 13 19 19 C 1.50702 * 109.46978 * 185.00083 * 16 15 13 20 20 C 1.38234 * 119.98790 * 299.72091 * 19 16 15 21 21 C 1.38187 * 120.05034 * 179.76961 * 20 19 16 22 22 C 1.38495 * 120.02411 * 0.51042 * 21 20 19 23 23 F 1.35102 * 120.01014 * 179.76901 * 22 21 20 24 24 C 1.38396 * 119.97466 * 359.74549 * 22 21 20 25 25 C 1.38438 * 119.95149 * 359.97438 * 24 22 21 26 26 F 1.35103 * 120.01425 * 180.02562 * 25 24 22 27 27 H 4.40645 * 5.51434 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.46949 * 161.70716 * 3 2 1 29 29 H 1.08996 * 109.47099 * 41.70910 * 3 2 1 30 30 H 0.97004 * 119.99801 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47491 * 299.72266 * 15 13 4 32 32 H 1.08994 * 109.47426 * 59.72631 * 15 13 4 33 33 H 1.08998 * 109.47193 * 59.99518 * 18 16 15 34 34 H 1.08998 * 109.47176 * 180.02562 * 18 16 15 35 35 H 1.09001 * 109.46561 * 299.99736 * 18 16 15 36 36 H 1.08000 * 119.97162 * 0.02729 * 20 19 16 37 37 H 1.07995 * 119.98411 * 180.25844 * 21 20 19 38 38 H 1.08003 * 120.02544 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2794 1.3525 5 6 3.4830 0.7542 2.1831 6 1 3.2631 0.6962 3.2388 7 6 4.1193 1.8762 1.6665 8 7 4.0660 3.0183 2.3144 9 14 5.0504 1.7613 0.0512 10 1 4.1705 2.2044 -1.0599 11 1 6.2516 2.6325 0.1092 12 1 5.4693 0.3554 -0.1797 13 6 3.2411 -1.5530 1.7802 14 8 3.6460 -1.7849 2.8998 15 6 2.8638 -2.6893 0.8650 16 6 3.0829 -4.0201 1.5873 17 1 4.1108 -4.0739 1.9460 18 6 2.1226 -4.1205 2.7742 19 6 2.8234 -5.1578 0.6337 20 6 1.5781 -5.3005 0.0509 21 6 1.3401 -6.3405 -0.8273 22 6 2.3462 -7.2473 -1.1165 23 9 2.1119 -8.2667 -1.9716 24 6 3.5918 -7.1085 -0.5296 25 6 3.8308 -6.0629 0.3457 26 9 5.0465 -5.9258 0.9190 27 1 -1.0500 0.0002 0.0001 28 1 3.0088 0.9766 -0.3226 29 1 3.0096 -0.7663 -0.6837 30 1 4.5105 3.8015 1.9540 31 1 1.8145 -2.5967 0.5843 32 1 3.4838 -2.6556 -0.0307 33 1 1.0947 -4.0666 2.4156 34 1 2.2791 -5.0684 3.2890 35 1 2.3103 -3.2975 3.4639 36 1 0.7917 -4.5962 0.2790 37 1 0.3680 -6.4486 -1.2852 38 1 4.3771 -7.8149 -0.7548 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281025607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:22 Heat of formation + Delta-G solvation = -36.647315 kcal Electronic energy + Delta-G solvation = -24821.858276 eV Core-core repulsion = 20881.510366 eV Total energy + Delta-G solvation = -3940.347910 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.112 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.19981 -49.07067 -39.68980 -38.73170 -35.76447 -34.55783 -32.70249 -31.64701 -31.00597 -29.56732 -27.83343 -26.77329 -24.74744 -23.80727 -23.00246 -20.61259 -18.86966 -18.52435 -18.36609 -17.36211 -16.82001 -16.45295 -16.13058 -15.92007 -15.66929 -15.43246 -15.24109 -14.87552 -14.57248 -14.18248 -13.78285 -13.65484 -13.12799 -13.08497 -12.87374 -12.72169 -12.63755 -12.28207 -11.95396 -11.83486 -11.63579 -11.08703 -10.93575 -10.90381 -10.76486 -10.56543 -10.28506 -9.81842 -9.61672 -9.26337 -9.15585 -8.76796 -8.53149 -7.91667 -6.45323 -4.03298 0.76902 0.81044 2.95308 3.10419 3.14004 3.17151 3.19262 3.29243 3.64738 3.68624 4.08429 4.24577 4.29385 4.39307 4.61324 4.67264 4.79920 4.95063 5.02698 5.17757 5.31754 5.42489 5.57415 5.58719 5.71257 5.75494 5.80107 5.85272 5.89173 5.93614 5.99212 6.09003 6.23272 6.33849 6.50569 6.58054 6.72569 7.46265 8.02720 8.22053 8.41514 8.89010 9.23476 9.66770 10.66727 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.003942 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.791558 B = 7100.587204 C = 7393.125522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.175 4.175 3 C 0.191 3.809 4 N -0.463 5.463 5 C -0.318 4.318 6 H 0.107 0.893 7 C 0.062 3.938 8 N -0.859 5.859 9 Si 0.864 3.136 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.260 1.260 13 C 0.474 3.526 14 O -0.552 6.552 15 C -0.132 4.132 16 C -0.036 4.036 17 H 0.094 0.906 18 C -0.146 4.146 19 C -0.110 4.110 20 C -0.057 4.057 21 C -0.161 4.161 22 C 0.118 3.882 23 F -0.136 7.136 24 C -0.191 4.191 25 C 0.132 3.868 26 F -0.126 7.126 27 H 0.213 0.787 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.275 0.725 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 -16.448 -9.298 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.176 4.176 3 C 0.068 3.932 4 N -0.185 5.185 5 C -0.445 4.445 6 H 0.124 0.876 7 C -0.144 4.144 8 N -0.495 5.495 9 Si 0.691 3.309 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.184 1.184 13 C 0.263 3.737 14 O -0.433 6.433 15 C -0.173 4.173 16 C -0.055 4.055 17 H 0.112 0.888 18 C -0.202 4.202 19 C -0.111 4.111 20 C -0.075 4.075 21 C -0.180 4.180 22 C 0.098 3.902 23 F -0.114 7.114 24 C -0.211 4.211 25 C 0.112 3.888 26 F -0.105 7.105 27 H 0.230 0.770 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.360 -16.376 -8.686 19.296 hybrid contribution 0.479 0.037 -1.126 1.225 sum -4.881 -16.339 -9.812 19.674 Atomic orbital electron populations 1.24725 0.95648 1.02379 1.00920 1.23772 0.94867 0.99192 0.99772 1.18927 0.84014 1.02591 0.87681 1.43698 1.57086 1.05512 1.12167 1.19033 1.37879 0.94019 0.93556 0.87568 1.25343 0.96227 0.94796 0.98044 1.69761 1.40093 0.99453 1.40151 0.87139 0.80716 0.79482 0.83573 1.20009 1.20847 1.18385 1.20148 0.81576 0.83256 0.88736 1.90535 1.48509 1.83334 1.20917 1.21757 1.02856 0.93483 0.99155 1.19843 1.02764 0.89540 0.93362 0.88813 1.21945 0.97359 1.03117 0.97829 1.20239 0.93175 0.97590 1.00142 1.20826 0.96163 0.96627 0.93931 1.21192 0.99586 0.95804 1.01390 1.17271 0.93878 0.87158 0.91869 1.91517 1.94923 1.57206 1.67768 1.20987 0.97988 1.00964 1.01157 1.17183 0.81133 0.95560 0.94888 1.91541 1.41050 1.95264 1.82599 0.76988 0.88557 0.89645 0.91489 0.89725 0.89979 0.93290 0.93201 0.89194 0.83778 0.84104 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.43 19.25 29.55 0.57 -2.86 16 2 C -0.17 -3.21 12.93 -37.12 -0.48 -3.69 16 3 C 0.19 3.78 4.27 -6.83 -0.03 3.75 16 4 N -0.46 -10.89 2.15 -117.94 -0.25 -11.15 16 5 C -0.32 -8.83 9.36 -14.93 -0.14 -8.97 16 6 H 0.11 3.32 7.91 -52.49 -0.42 2.91 16 7 C 0.06 1.69 5.26 -17.47 -0.09 1.59 16 8 N -0.86 -24.48 13.96 55.50 0.77 -23.71 16 9 Si 0.86 19.69 25.04 -169.99 -4.26 15.43 16 10 H -0.27 -5.77 6.69 56.52 0.38 -5.39 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.47 10.45 7.28 -10.99 -0.08 10.37 16 14 O -0.55 -13.94 13.84 5.55 0.08 -13.86 16 15 C -0.13 -2.14 3.52 -27.88 -0.10 -2.24 16 16 C -0.04 -0.54 2.19 -91.77 -0.20 -0.74 16 17 H 0.09 1.59 6.94 -51.93 -0.36 1.23 16 18 C -0.15 -2.13 8.74 37.16 0.32 -1.81 16 19 C -0.11 -1.37 4.79 -104.54 -0.50 -1.87 16 20 C -0.06 -0.58 8.76 -39.60 -0.35 -0.93 16 21 C -0.16 -1.49 10.03 -39.51 -0.40 -1.88 16 22 C 0.12 1.21 7.30 -39.43 -0.29 0.92 16 23 F -0.14 -1.42 17.27 2.25 0.04 -1.39 16 24 C -0.19 -2.04 10.01 -39.45 -0.39 -2.43 16 25 C 0.13 1.64 7.24 -39.43 -0.29 1.35 16 26 F -0.13 -1.75 16.19 2.25 0.04 -1.71 16 27 H 0.21 2.40 7.80 -54.09 -0.42 1.98 16 28 H 0.10 2.02 3.61 -51.93 -0.19 1.84 16 29 H 0.09 1.39 6.69 -51.93 -0.35 1.05 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.08 1.22 6.94 -51.93 -0.36 0.86 16 32 H 0.08 1.22 7.41 -51.93 -0.38 0.84 16 33 H 0.05 0.62 7.37 -51.93 -0.38 0.24 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.62 5.95 -51.93 -0.31 1.31 16 36 H 0.14 1.26 7.16 -52.49 -0.38 0.88 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -30.96 330.63 -5.01 -35.98 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.97 Total: 4.87 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.44 Total: -9.45 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.52 Total: -34.86 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.08 Total: -13.86 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.26 Total: 15.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.96 -5.01 -35.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281025607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.672 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds