Wall clock time and date at job start Tue Mar 31 2020 08:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38312 * 119.93978 * 2 1 4 4 C 1.38393 * 120.32222 * 180.02562 * 3 2 1 5 5 C 1.37933 * 120.20954 * 0.25687 * 4 3 2 6 6 C 1.39573 * 119.87993 * 359.42688 * 5 4 3 7 7 C 1.47867 * 120.16291 * 180.29682 * 6 5 4 8 8 N 1.31588 * 119.45060 * 229.53092 * 7 6 5 9 9 C 1.33657 * 121.74718 * 179.75715 * 8 7 6 10 10 C 1.40479 * 120.98324 * 180.24224 * 9 8 7 11 11 C 1.36246 * 119.70614 * 180.27492 * 10 9 8 12 12 C 1.39165 * 121.75468 * 359.97438 * 11 10 9 13 13 C 1.36129 * 121.46561 * 0.02562 * 12 11 10 14 14 C 1.40781 * 119.46834 * 359.97438 * 13 12 11 15 15 C 1.40022 * 121.40669 * 179.97438 * 14 13 12 16 16 C 1.40378 * 117.96997 * 180.02562 * 15 14 13 17 17 C 1.40833 * 120.41201 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00171 * 207.70667 * 17 16 15 19 19 C 1.40098 * 119.99913 * 27.70965 * 17 16 15 20 20 N 1.30765 * 120.00012 * 12.15769 * 19 17 16 21 21 Si 1.86804 * 119.99758 * 192.15933 * 19 17 16 22 22 H 1.48502 * 109.46739 * 59.99964 * 21 19 17 23 23 H 1.48493 * 109.46695 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47080 * 299.99977 * 21 19 17 25 25 C 1.38216 * 119.94313 * 179.97438 * 2 1 3 26 26 F 1.35102 * 120.09991 * 0.02849 * 25 2 1 27 27 H 1.09005 * 109.47073 * 90.00163 * 1 2 3 28 28 H 1.09007 * 109.47201 * 209.99945 * 1 2 3 29 29 H 1.08999 * 109.47474 * 330.00076 * 1 2 3 30 30 H 1.07991 * 119.83442 * 359.97438 * 3 2 1 31 31 H 1.08006 * 119.89421 * 179.97438 * 4 3 2 32 32 H 1.08004 * 120.06081 * 179.69746 * 5 4 3 33 33 H 1.08000 * 120.14931 * 0.29153 * 10 9 8 34 34 H 1.08007 * 119.12304 * 180.02562 * 11 10 9 35 35 H 1.07998 * 119.26323 * 179.97438 * 12 11 10 36 36 H 1.07997 * 120.26402 * 180.02562 * 13 12 11 37 37 H 1.08006 * 121.01484 * 0.02562 * 15 14 13 38 38 H 0.96994 * 119.99663 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1985 0.0000 4 6 3.5812 1.2078 -0.0005 5 6 4.2831 0.0204 -0.0064 6 6 3.5953 -1.1940 0.0003 7 6 4.3416 -2.4705 0.0006 8 7 4.0221 -3.4070 -0.8669 9 6 4.6691 -4.5757 -0.9103 10 6 4.3180 -5.5624 -1.8466 11 6 4.9913 -6.7467 -1.8641 12 6 6.0277 -7.0132 -0.9744 13 6 6.4170 -6.1000 -0.0429 14 6 5.7597 -4.8569 0.0253 15 6 6.1265 -3.8884 0.9676 16 6 5.4221 -2.6741 0.9720 17 6 5.7479 -1.6643 1.8980 18 1 4.9929 -0.9618 2.2188 19 6 7.0514 -1.5709 2.4029 20 7 8.0177 -2.2559 1.8490 21 14 7.4088 -0.4680 3.8676 22 1 6.6039 -0.9159 5.0325 23 1 8.8528 -0.5458 4.2050 24 1 7.0536 0.9337 3.5301 25 6 2.1969 -1.1977 0.0005 26 9 1.5222 -2.3682 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6536 2.1316 -0.0004 31 1 4.1132 2.1477 -0.0009 32 1 5.3631 0.0305 -0.0118 33 1 3.5180 -5.3828 -2.5496 34 1 4.7137 -7.4985 -2.5882 35 1 6.5339 -7.9659 -1.0237 36 1 7.2242 -6.3271 0.6378 37 1 6.9270 -4.0699 1.6696 38 1 8.9202 -2.1909 2.1984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242237017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:08 Heat of formation + Delta-G solvation = 10.474822 kcal Electronic energy + Delta-G solvation = -24173.364446 eV Core-core repulsion = 20665.829131 eV Total energy + Delta-G solvation = -3507.535316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.19670 -39.18337 -38.35367 -36.00637 -34.24938 -32.62134 -31.72076 -30.72776 -29.38209 -28.28728 -26.59435 -25.67724 -23.65895 -21.98946 -21.36063 -20.72338 -20.43123 -18.03541 -17.01167 -16.47331 -16.29342 -15.82081 -15.39057 -15.02699 -14.86017 -14.35736 -13.61712 -13.50062 -13.25509 -13.12878 -12.96850 -12.83534 -12.67882 -12.50507 -12.14008 -11.97919 -11.79601 -11.51859 -11.33960 -11.17574 -11.09269 -10.86201 -10.77690 -10.50542 -10.45247 -9.95272 -9.61231 -9.02942 -8.54002 -8.22404 -8.14098 -7.39416 -7.17143 -7.01669 -4.62001 1.27209 1.68376 1.82134 2.07923 2.86111 2.90850 2.93588 3.40837 3.68115 3.79303 4.12064 4.62425 4.74542 5.03463 5.07209 5.22214 5.48783 5.49956 5.62891 5.66275 5.69916 5.73130 5.85790 5.86470 6.00415 6.15417 6.25001 6.29623 6.34112 6.49189 6.58636 6.69348 6.76727 6.82029 6.86144 6.98093 6.99580 7.24116 7.33017 7.34897 7.41799 7.66331 7.71413 7.88287 8.22932 8.41075 8.48195 9.18797 9.83772 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.009358 B = 0.007357 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.283735 B = 3804.951194 C = 6404.530895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.136 4.136 3 C -0.103 4.103 4 C -0.137 4.137 5 C -0.062 4.062 6 C -0.027 4.027 7 C 0.107 3.893 8 N -0.448 5.448 9 C 0.026 3.974 10 C -0.058 4.058 11 C -0.178 4.178 12 C -0.117 4.117 13 C -0.129 4.129 14 C -0.045 4.045 15 C -0.169 4.169 16 C 0.079 3.921 17 C -0.426 4.426 18 H 0.089 0.911 19 C 0.071 3.929 20 N -0.775 5.775 21 Si 0.914 3.086 22 H -0.260 1.260 23 H -0.275 1.275 24 H -0.260 1.260 25 C 0.113 3.887 26 F -0.131 7.131 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 4.157 -0.774 6.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C -0.122 4.122 4 C -0.155 4.155 5 C -0.081 4.081 6 C -0.028 4.028 7 C -0.048 4.048 8 N -0.155 5.155 9 C -0.097 4.097 10 C -0.076 4.076 11 C -0.199 4.199 12 C -0.135 4.135 13 C -0.149 4.149 14 C -0.047 4.047 15 C -0.195 4.195 16 C 0.074 3.926 17 C -0.455 4.455 18 H 0.107 0.893 19 C -0.150 4.150 20 N -0.398 5.398 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.184 1.184 25 C 0.093 3.907 26 F -0.110 7.110 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.153 0.847 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.298 4.079 -1.408 6.834 hybrid contribution 0.974 0.010 1.209 1.553 sum -4.324 4.090 -0.200 5.955 Atomic orbital electron populations 1.20639 0.90793 1.02710 1.02232 1.19726 0.96455 0.91946 1.05526 1.20792 0.94151 0.96338 1.00890 1.21027 0.93901 0.98052 1.02565 1.21275 1.01052 0.90102 0.95713 1.18552 0.90177 0.93297 1.00817 1.20846 0.97741 0.91578 0.94610 1.67416 1.25993 1.00513 1.21532 1.19301 0.97430 0.93092 0.99843 1.20506 0.98233 0.92303 0.96589 1.20267 0.99854 0.97667 1.02068 1.20482 0.97847 0.98614 0.96541 1.20855 1.00351 0.93888 0.99757 1.19730 0.94725 0.94504 0.95768 1.21551 1.04814 0.91769 1.01333 1.19161 0.89811 0.92914 0.90667 1.19604 0.95468 1.11489 1.18895 0.89303 1.26038 0.95760 0.95971 0.97206 1.69746 1.01975 1.33049 1.34992 0.86234 0.78254 0.80718 0.81073 1.18465 1.19975 1.18395 1.17652 0.89273 0.80853 1.02943 1.91465 1.79804 1.46144 1.93565 0.91377 0.91557 0.91483 0.85900 0.85771 0.84187 0.86918 0.87663 0.87813 0.87049 0.84719 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.83 36.00 0.35 -1.01 16 2 C -0.14 -2.18 5.88 -104.60 -0.62 -2.80 16 3 C -0.10 -1.47 9.69 -39.50 -0.38 -1.86 16 4 C -0.14 -2.09 10.03 -39.64 -0.40 -2.49 16 5 C -0.06 -1.17 8.01 -39.20 -0.31 -1.48 16 6 C -0.03 -0.57 5.09 -104.86 -0.53 -1.11 16 7 C 0.11 2.63 6.26 -80.61 -0.50 2.13 16 8 N -0.45 -11.24 9.68 -4.84 -0.05 -11.29 16 9 C 0.03 0.64 6.74 -82.94 -0.56 0.08 16 10 C -0.06 -1.22 9.98 -39.45 -0.39 -1.61 16 11 C -0.18 -3.33 9.90 -39.95 -0.40 -3.73 16 12 C -0.12 -2.18 9.91 -40.00 -0.40 -2.58 16 13 C -0.13 -2.72 9.80 -39.38 -0.39 -3.11 16 14 C -0.04 -1.09 5.87 -104.98 -0.62 -1.70 16 15 C -0.17 -4.28 8.52 -38.11 -0.32 -4.60 16 16 C 0.08 2.01 5.69 -104.69 -0.60 1.41 16 17 C -0.43 -10.11 7.13 -37.90 -0.27 -10.38 16 18 H 0.09 2.03 6.71 -52.49 -0.35 1.68 16 19 C 0.07 1.59 5.25 -17.31 -0.09 1.50 16 20 N -0.77 -18.10 10.86 55.56 0.60 -17.50 16 21 Si 0.91 16.86 29.58 -169.99 -5.03 11.83 16 22 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 24 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 25 C 0.11 2.25 7.18 -38.99 -0.28 1.97 16 26 F -0.13 -2.81 15.63 2.25 0.04 -2.77 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.87 7.63 -51.93 -0.40 0.48 16 29 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.14 2.71 7.31 -52.48 -0.38 2.33 16 33 H 0.11 2.19 8.06 -52.49 -0.42 1.76 16 34 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 37 H 0.14 3.43 6.26 -52.48 -0.33 3.10 16 38 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -27.38 328.62 -10.16 -37.54 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -3.97 Total: 8.59 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -6.70 Total: -31.35 kcal Atomic # 7 Polarization: -29.34 SS G_CDS: 0.56 Total: -28.78 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.38 -10.16 -37.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242237017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.015 kcal (2) G-P(sol) polarization free energy of solvation -27.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds