Wall clock time and date at job start Tue Mar 31 2020 08:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38312 * 119.93978 * 2 1 4 4 C 1.38393 * 120.32222 * 180.02562 * 3 2 1 5 5 C 1.37933 * 120.20954 * 0.25687 * 4 3 2 6 6 C 1.39573 * 119.87993 * 359.42688 * 5 4 3 7 7 C 1.47867 * 120.16291 * 180.29682 * 6 5 4 8 8 N 1.31588 * 119.45060 * 229.53092 * 7 6 5 9 9 C 1.33657 * 121.74718 * 179.75715 * 8 7 6 10 10 C 1.40479 * 120.98324 * 180.24224 * 9 8 7 11 11 C 1.36246 * 119.70614 * 180.27492 * 10 9 8 12 12 C 1.39165 * 121.75468 * 359.97438 * 11 10 9 13 13 C 1.36129 * 121.46561 * 0.02562 * 12 11 10 14 14 C 1.40781 * 119.46834 * 359.97438 * 13 12 11 15 15 C 1.40022 * 121.40669 * 179.97438 * 14 13 12 16 16 C 1.40378 * 117.96997 * 180.02562 * 15 14 13 17 17 C 1.40833 * 120.41201 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00171 * 207.70667 * 17 16 15 19 19 C 1.40098 * 119.99913 * 27.70965 * 17 16 15 20 20 N 1.30765 * 120.00012 * 12.15769 * 19 17 16 21 21 Si 1.86804 * 119.99758 * 192.15933 * 19 17 16 22 22 H 1.48502 * 109.46739 * 59.99964 * 21 19 17 23 23 H 1.48493 * 109.46695 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47080 * 299.99977 * 21 19 17 25 25 C 1.38216 * 119.94313 * 179.97438 * 2 1 3 26 26 F 1.35102 * 120.09991 * 0.02849 * 25 2 1 27 27 H 1.09005 * 109.47073 * 90.00163 * 1 2 3 28 28 H 1.09007 * 109.47201 * 209.99945 * 1 2 3 29 29 H 1.08999 * 109.47474 * 330.00076 * 1 2 3 30 30 H 1.07991 * 119.83442 * 359.97438 * 3 2 1 31 31 H 1.08006 * 119.89421 * 179.97438 * 4 3 2 32 32 H 1.08004 * 120.06081 * 179.69746 * 5 4 3 33 33 H 1.08000 * 120.14931 * 0.29153 * 10 9 8 34 34 H 1.08007 * 119.12304 * 180.02562 * 11 10 9 35 35 H 1.07998 * 119.26323 * 179.97438 * 12 11 10 36 36 H 1.07997 * 120.26402 * 180.02562 * 13 12 11 37 37 H 1.08006 * 121.01484 * 0.02562 * 15 14 13 38 38 H 0.96994 * 119.99663 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1985 0.0000 4 6 3.5812 1.2078 -0.0005 5 6 4.2831 0.0204 -0.0064 6 6 3.5953 -1.1940 0.0003 7 6 4.3416 -2.4705 0.0006 8 7 4.0221 -3.4070 -0.8669 9 6 4.6691 -4.5757 -0.9103 10 6 4.3180 -5.5624 -1.8466 11 6 4.9913 -6.7467 -1.8641 12 6 6.0277 -7.0132 -0.9744 13 6 6.4170 -6.1000 -0.0429 14 6 5.7597 -4.8569 0.0253 15 6 6.1265 -3.8884 0.9676 16 6 5.4221 -2.6741 0.9720 17 6 5.7479 -1.6643 1.8980 18 1 4.9929 -0.9618 2.2188 19 6 7.0514 -1.5709 2.4029 20 7 8.0177 -2.2559 1.8490 21 14 7.4088 -0.4680 3.8676 22 1 6.6039 -0.9159 5.0325 23 1 8.8528 -0.5458 4.2050 24 1 7.0536 0.9337 3.5301 25 6 2.1969 -1.1977 0.0005 26 9 1.5222 -2.3682 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6536 2.1316 -0.0004 31 1 4.1132 2.1477 -0.0009 32 1 5.3631 0.0305 -0.0118 33 1 3.5180 -5.3828 -2.5496 34 1 4.7137 -7.4985 -2.5882 35 1 6.5339 -7.9659 -1.0237 36 1 7.2242 -6.3271 0.6378 37 1 6.9270 -4.0699 1.6696 38 1 8.9202 -2.1909 2.1984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242237017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:08 Heat of formation + Delta-G solvation = -1.645806 kcal Electronic energy + Delta-G solvation = -24173.890036 eV Core-core repulsion = 20665.829131 eV Total energy + Delta-G solvation = -3508.060906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.74318 -40.83603 -39.76689 -37.63489 -35.99444 -33.93933 -33.45915 -32.13801 -31.08348 -29.86806 -27.80089 -27.40176 -25.21223 -23.69485 -22.79853 -22.25852 -22.03578 -19.74028 -18.50042 -18.13144 -17.86654 -17.37951 -16.88569 -16.53649 -16.41251 -15.75575 -15.17741 -15.08905 -14.76557 -14.72197 -14.41347 -14.22427 -14.05686 -13.98538 -13.68521 -13.46932 -13.24815 -13.00153 -12.83312 -12.67118 -12.43132 -12.34122 -12.28582 -12.03623 -11.92802 -11.62573 -11.30040 -10.77738 -10.20327 -9.79746 -9.48920 -9.12173 -8.86780 -8.71462 -6.42855 -0.32415 0.20761 0.34051 0.50480 1.34798 1.38968 1.49563 1.65002 2.11595 2.18996 2.73189 2.91524 3.37690 3.48487 3.65585 3.87119 3.96149 4.03894 4.22515 4.28983 4.34399 4.43810 4.51877 4.58823 4.63439 4.69372 4.79786 4.87983 4.96234 5.03644 5.11747 5.18509 5.28526 5.32819 5.41309 5.49694 5.52519 5.57290 5.69203 5.74076 5.86829 5.93083 6.07713 6.20639 6.43803 6.62913 6.68762 7.38114 8.16331 Molecular weight = 307.11amu Principal moments of inertia in cm(-1) A = 0.009358 B = 0.007357 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.283735 B = 3804.951194 C = 6404.530895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.130 4.130 3 C -0.086 4.086 4 C -0.123 4.123 5 C -0.079 4.079 6 C -0.062 4.062 7 C 0.093 3.907 8 N -0.470 5.470 9 C -0.007 4.007 10 C -0.078 4.078 11 C -0.160 4.160 12 C -0.102 4.102 13 C -0.150 4.150 14 C -0.068 4.068 15 C -0.200 4.200 16 C 0.051 3.949 17 C -0.440 4.440 18 H 0.090 0.910 19 C 0.035 3.965 20 N -0.806 5.806 21 Si 0.983 3.017 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.246 1.246 25 C 0.080 3.920 26 F -0.151 7.151 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.174 0.826 31 H 0.163 0.837 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 5.653 -0.954 8.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.131 4.131 3 C -0.104 4.104 4 C -0.141 4.141 5 C -0.098 4.098 6 C -0.063 4.063 7 C -0.062 4.062 8 N -0.176 5.176 9 C -0.129 4.129 10 C -0.096 4.096 11 C -0.180 4.180 12 C -0.119 4.119 13 C -0.169 4.169 14 C -0.070 4.070 15 C -0.226 4.226 16 C 0.046 3.954 17 C -0.468 4.468 18 H 0.108 0.892 19 C -0.183 4.183 20 N -0.429 5.429 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.190 1.190 24 H -0.170 1.170 25 C 0.060 3.940 26 F -0.129 7.129 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.192 0.808 31 H 0.180 0.820 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.241 5.558 -1.610 8.511 hybrid contribution 1.224 -0.519 1.146 1.755 sum -5.018 5.039 -0.464 7.127 Atomic orbital electron populations 1.20741 0.88156 1.03879 1.03445 1.20204 0.98402 0.90961 1.03516 1.21357 0.93785 0.97425 0.97798 1.21447 0.94700 0.97866 1.00055 1.21236 1.00384 0.90848 0.97310 1.18672 0.91117 0.92837 1.03709 1.21382 0.97844 0.92845 0.94131 1.67480 1.26722 1.01221 1.22204 1.19889 0.98019 0.93953 1.01084 1.20777 0.99459 0.92785 0.96619 1.20795 0.98213 0.97222 1.01799 1.20987 0.96973 0.99481 0.94498 1.21081 1.01033 0.93419 1.01343 1.20050 0.95391 0.95775 0.95821 1.21521 1.05665 0.92855 1.02516 1.19541 0.90682 0.93557 0.91650 1.19733 0.96294 1.11480 1.19315 0.89228 1.26897 0.94906 0.97121 0.99364 1.69814 1.02567 1.34272 1.36283 0.85203 0.78280 0.79201 0.77038 1.18659 1.19044 1.16973 1.18042 0.89029 0.81704 1.05222 1.91400 1.79977 1.47555 1.94016 0.90013 0.92709 0.88008 0.80833 0.81979 0.86076 0.85788 0.83207 0.83298 0.85967 0.85994 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.40 9.83 71.24 0.70 -1.70 16 2 C -0.13 -3.96 5.88 -19.85 -0.12 -4.08 16 3 C -0.09 -2.12 9.69 22.32 0.22 -1.90 16 4 C -0.12 -3.44 10.03 22.23 0.22 -3.22 16 5 C -0.08 -3.03 8.01 22.52 0.18 -2.85 16 6 C -0.06 -2.79 5.09 -20.02 -0.10 -2.89 16 7 C 0.09 4.95 6.26 43.95 0.28 5.22 16 8 N -0.47 -25.25 9.68 -169.22 -1.64 -26.89 16 9 C -0.01 -0.37 6.74 41.54 0.28 -0.09 16 10 C -0.08 -3.32 9.98 22.35 0.22 -3.10 16 11 C -0.16 -5.65 9.90 22.03 0.22 -5.43 16 12 C -0.10 -3.59 9.91 22.00 0.22 -3.37 16 13 C -0.15 -6.41 9.80 22.40 0.22 -6.19 16 14 C -0.07 -3.50 5.87 -20.09 -0.12 -3.62 16 15 C -0.20 -10.95 8.52 23.22 0.20 -10.76 16 16 C 0.05 2.77 5.69 -19.91 -0.11 2.65 16 17 C -0.44 -22.20 7.13 23.36 0.17 -22.03 16 18 H 0.09 4.34 6.71 -2.91 -0.02 4.32 16 19 C 0.03 1.63 5.25 85.30 0.45 2.07 16 20 N -0.81 -39.62 10.86 21.85 0.24 -39.38 16 21 Si 0.98 34.90 29.58 68.60 2.03 36.93 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 23 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 24 H -0.25 -8.15 7.11 99.48 0.71 -7.44 16 25 C 0.08 3.30 7.18 22.65 0.16 3.46 16 26 F -0.15 -6.82 15.63 44.97 0.70 -6.12 16 27 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.05 1.38 7.63 -2.38 -0.02 1.36 16 29 H 0.10 1.61 8.08 -2.39 -0.02 1.59 16 30 H 0.17 2.61 8.06 -2.92 -0.02 2.59 16 31 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 32 H 0.12 5.01 7.31 -2.91 -0.02 4.99 16 33 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 34 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.12 6.76 6.26 -2.91 -0.02 6.74 16 38 H 0.30 13.04 8.29 -92.71 -0.77 12.27 16 Total: -1.00 -67.08 328.62 5.71 -61.37 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 1.10 Total: 31.90 kcal Atomic # 6 Polarization: -61.09 SS G_CDS: 3.28 Total: -57.81 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -1.40 Total: -66.27 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.70 Total: -6.12 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Total: -67.08 5.71 -61.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242237017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.724 kcal (2) G-P(sol) polarization free energy of solvation -67.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds