Wall clock time and date at job start Tue Mar 31 2020 10:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.46937 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00384 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99926 * 180.02562 * 8 7 6 11 11 N 1.40103 * 119.99926 * 180.02562 * 10 8 7 12 12 C 1.34776 * 119.99592 * 180.02562 * 11 10 8 13 13 O 1.21589 * 119.99367 * 179.97438 * 12 11 10 14 14 N 1.34771 * 120.00382 * 359.97438 * 12 11 10 15 15 C 1.46507 * 119.99986 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.46913 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00085 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99811 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00015 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99790 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47465 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47251 * 120.00094 * 20 18 16 23 23 H 1.48504 * 109.47003 * 239.99445 * 20 18 16 24 24 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 25 25 C 1.38145 * 119.94323 * 359.49123 * 24 5 4 26 26 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 27 27 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 28 28 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 29 29 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 30 30 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 32 32 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 33 33 H 0.96995 * 119.99933 * 359.97438 * 10 8 7 34 34 H 0.97004 * 119.99922 * 359.97438 * 11 10 8 35 35 H 0.96999 * 119.99848 * 359.97438 * 14 12 11 36 36 H 1.08996 * 109.47066 * 299.99773 * 15 14 12 37 37 H 1.08992 * 109.46926 * 60.00081 * 15 14 12 38 38 H 0.97002 * 119.99980 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.02769 * 179.72249 * 24 5 4 40 40 H 1.08006 * 119.97076 * 180.25587 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7752 -1.0756 0.0027 9 8 8.2388 0.0451 0.0031 10 7 8.5963 -2.1445 0.0028 11 7 9.9852 -1.9608 0.0039 12 6 10.8062 -3.0297 0.0034 13 8 12.0116 -2.8703 0.0038 14 7 10.2911 -4.2751 0.0025 15 6 11.1836 -5.4369 0.0025 16 6 10.3629 -6.7008 0.0020 17 1 9.2843 -6.6443 0.0012 18 6 10.9888 -7.9292 0.0025 19 7 12.3021 -7.9980 0.0029 20 14 9.9714 -9.4959 0.0011 21 1 8.5277 -9.1486 0.0002 22 1 10.2903 -10.2921 -1.2111 23 1 10.2877 -10.2926 1.2138 24 6 3.5787 -1.2007 -0.0033 25 6 2.1973 -1.1980 0.0014 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 1.6558 2.1327 -0.0009 30 1 4.1172 2.1370 0.0001 31 1 5.9884 -1.8297 0.8924 32 1 5.9884 -1.8305 -0.8875 33 1 8.2256 -3.0408 0.0029 34 1 10.3559 -1.0644 0.0042 35 1 9.3295 -4.4022 0.0025 36 1 11.8130 -5.4116 -0.8870 37 1 11.8117 -5.4125 0.8929 38 1 12.7425 -8.8623 0.0037 39 1 4.1174 -2.1367 -0.0070 40 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787366607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:58 Heat of formation + Delta-G solvation = -41.229896 kcal Electronic energy + Delta-G solvation = -23531.317077 eV Core-core repulsion = 19734.150718 eV Total energy + Delta-G solvation = -3797.166359 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83052 -40.08952 -38.97075 -37.80886 -35.54667 -34.38760 -32.52069 -32.37687 -31.54663 -31.24258 -28.51988 -27.18967 -26.38493 -23.31890 -23.05053 -21.86466 -21.15574 -20.52843 -19.10305 -18.79079 -17.57019 -16.84488 -16.78908 -16.14284 -15.69802 -15.61091 -15.29328 -14.96046 -14.68874 -14.56263 -14.49259 -14.15605 -13.96371 -13.85106 -13.28692 -13.10540 -12.61572 -12.44916 -12.20576 -12.10447 -11.89991 -11.31600 -11.23669 -11.20193 -11.05220 -10.97025 -10.50061 -10.30588 -9.79283 -9.48310 -9.36787 -8.88609 -8.44431 -8.40760 -7.94359 -6.25545 -4.33414 0.97553 1.04996 1.58129 2.17645 2.89643 3.17325 3.23959 3.26692 3.38168 3.61912 3.62177 4.02401 4.25974 4.41644 4.46915 4.54075 4.60567 4.62987 4.88896 4.98405 5.11031 5.15212 5.19418 5.24597 5.35598 5.54746 5.67914 5.91768 5.98389 6.25298 6.31959 6.42722 6.60366 6.99133 7.19258 7.29406 7.36118 7.42066 7.54082 7.83060 7.97400 8.56881 8.73198 8.99177 9.33386 10.84539 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.002488 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.268350 B =11250.845990 C =13133.366474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.126 4.126 3 C -0.081 4.081 4 C -0.143 4.143 5 C 0.125 3.875 6 O -0.288 6.288 7 C 0.051 3.949 8 C 0.515 3.485 9 O -0.516 6.516 10 N -0.519 5.519 11 N -0.540 5.540 12 C 0.702 3.298 13 O -0.575 6.575 14 N -0.724 5.724 15 C 0.263 3.737 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.882 5.882 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.206 4.206 25 C -0.079 4.079 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.423 0.577 34 H 0.436 0.564 35 H 0.381 0.619 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.267 0.733 39 H 0.131 0.869 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.210 13.531 -0.021 27.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.162 4.162 5 C 0.079 3.921 6 O -0.201 6.201 7 C -0.029 4.029 8 C 0.299 3.701 9 O -0.389 6.389 10 N -0.271 5.271 11 N -0.300 5.300 12 C 0.401 3.599 13 O -0.449 6.449 14 N -0.378 5.378 15 C 0.142 3.858 16 C -0.584 4.584 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.519 5.519 20 Si 0.733 3.267 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.224 4.224 25 C -0.097 4.097 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.265 0.735 34 H 0.281 0.719 35 H 0.214 0.786 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.149 0.851 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.649 14.257 -0.020 26.763 hybrid contribution -0.965 -1.373 -0.004 1.678 sum -23.614 12.885 -0.025 26.901 Atomic orbital electron populations 1.20729 0.91039 1.02693 1.02211 1.19871 0.96309 0.93082 1.03402 1.20864 0.92865 0.97882 0.98288 1.20454 0.93723 0.96460 1.05560 1.19030 0.81632 0.94469 0.96932 1.86137 1.16436 1.28769 1.88718 1.22255 0.89561 0.86335 1.04746 1.20038 0.87599 0.84456 0.78020 1.90784 1.76744 1.23072 1.48307 1.44537 0.96416 1.09813 1.76382 1.44848 0.91601 1.10343 1.83184 1.15998 0.84543 0.80553 0.78800 1.90999 1.11216 1.83463 1.59200 1.45806 1.10280 1.04872 1.76875 1.19119 0.89047 0.79487 0.98110 1.21188 0.93127 0.90341 1.53722 0.91881 1.24948 0.95059 0.99367 0.94608 1.69977 1.07840 1.25638 1.48472 0.86337 0.79981 0.82582 0.77830 1.19663 1.20756 1.20760 1.21292 0.95572 0.96996 1.08586 1.20850 0.93244 0.97824 0.97832 0.91372 0.91651 0.91656 0.85307 0.84915 0.88141 0.88137 0.73477 0.71858 0.78615 0.95259 0.95266 0.92356 0.85119 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.01 36.01 0.36 -0.18 16 2 C -0.13 -0.92 5.88 -104.60 -0.62 -1.53 16 3 C -0.08 -0.61 9.69 -39.61 -0.38 -0.99 16 4 C -0.14 -1.31 9.99 -39.44 -0.39 -1.70 16 5 C 0.12 1.22 6.69 -39.22 -0.26 0.96 16 6 O -0.29 -3.23 9.67 -39.35 -0.38 -3.61 16 7 C 0.05 0.42 5.22 36.00 0.19 0.61 16 8 C 0.51 6.12 8.02 -10.99 -0.09 6.04 16 9 O -0.52 -8.35 16.34 -14.35 -0.23 -8.59 16 10 N -0.52 -6.05 6.26 31.22 0.20 -5.85 16 11 N -0.54 -8.39 6.26 27.63 0.17 -8.21 16 12 C 0.70 13.84 8.68 -86.92 -0.75 13.09 16 13 O -0.57 -13.87 17.18 5.29 0.09 -13.78 16 14 N -0.72 -14.20 5.51 -66.42 -0.37 -14.57 16 15 C 0.26 6.62 5.43 -5.19 -0.03 6.60 16 16 C -0.55 -13.92 9.28 -34.44 -0.32 -14.24 16 17 H 0.06 1.47 7.60 -52.48 -0.40 1.07 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.88 -25.08 13.29 55.43 0.74 -24.34 16 20 Si 0.91 19.87 29.54 -169.99 -5.02 14.85 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.21 -1.64 9.04 -39.44 -0.36 -2.00 16 25 C -0.08 -0.59 9.69 -39.61 -0.38 -0.97 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 28 H 0.06 0.27 8.08 -51.93 -0.42 -0.15 16 29 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.10 0.56 7.67 -51.93 -0.40 0.16 16 32 H 0.10 0.56 7.65 -51.93 -0.40 0.16 16 33 H 0.42 3.77 6.70 -182.60 -1.22 2.55 16 34 H 0.44 6.79 8.10 -182.59 -1.48 5.31 16 35 H 0.38 6.00 6.24 -40.82 -0.25 5.75 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 40 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -34.99 351.78 -9.63 -44.62 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.99 Total: 6.90 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -3.13 Total: 7.28 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.74 Total: -52.98 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.52 Total: -25.98 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.99 -9.63 -44.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787366607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.394 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds