Wall clock time and date at job start Tue Mar 31 2020 10:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.46937 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00384 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99926 * 180.02562 * 8 7 6 11 11 N 1.40103 * 119.99926 * 180.02562 * 10 8 7 12 12 C 1.34776 * 119.99592 * 180.02562 * 11 10 8 13 13 O 1.21589 * 119.99367 * 179.97438 * 12 11 10 14 14 N 1.34771 * 120.00382 * 359.97438 * 12 11 10 15 15 C 1.46507 * 119.99986 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.46913 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00085 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99811 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00015 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99790 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47465 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47251 * 120.00094 * 20 18 16 23 23 H 1.48504 * 109.47003 * 239.99445 * 20 18 16 24 24 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 25 25 C 1.38145 * 119.94323 * 359.49123 * 24 5 4 26 26 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 27 27 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 28 28 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 29 29 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 30 30 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 32 32 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 33 33 H 0.96995 * 119.99933 * 359.97438 * 10 8 7 34 34 H 0.97004 * 119.99922 * 359.97438 * 11 10 8 35 35 H 0.96999 * 119.99848 * 359.97438 * 14 12 11 36 36 H 1.08996 * 109.47066 * 299.99773 * 15 14 12 37 37 H 1.08992 * 109.46926 * 60.00081 * 15 14 12 38 38 H 0.97002 * 119.99980 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.02769 * 179.72249 * 24 5 4 40 40 H 1.08006 * 119.97076 * 180.25587 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7752 -1.0756 0.0027 9 8 8.2388 0.0451 0.0031 10 7 8.5963 -2.1445 0.0028 11 7 9.9852 -1.9608 0.0039 12 6 10.8062 -3.0297 0.0034 13 8 12.0116 -2.8703 0.0038 14 7 10.2911 -4.2751 0.0025 15 6 11.1836 -5.4369 0.0025 16 6 10.3629 -6.7008 0.0020 17 1 9.2843 -6.6443 0.0012 18 6 10.9888 -7.9292 0.0025 19 7 12.3021 -7.9980 0.0029 20 14 9.9714 -9.4959 0.0011 21 1 8.5277 -9.1486 0.0002 22 1 10.2903 -10.2921 -1.2111 23 1 10.2877 -10.2926 1.2138 24 6 3.5787 -1.2007 -0.0033 25 6 2.1973 -1.1980 0.0014 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 1.6558 2.1327 -0.0009 30 1 4.1172 2.1370 0.0001 31 1 5.9884 -1.8297 0.8924 32 1 5.9884 -1.8305 -0.8875 33 1 8.2256 -3.0408 0.0029 34 1 10.3559 -1.0644 0.0042 35 1 9.3295 -4.4022 0.0025 36 1 11.8130 -5.4116 -0.8870 37 1 11.8117 -5.4125 0.8929 38 1 12.7425 -8.8623 0.0037 39 1 4.1174 -2.1367 -0.0070 40 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787366607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:58 Heat of formation + Delta-G solvation = -66.655294 kcal Electronic energy + Delta-G solvation = -23532.419605 eV Core-core repulsion = 19734.150718 eV Total energy + Delta-G solvation = -3798.268887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.78375 -41.13310 -40.21006 -38.51566 -36.86879 -36.24249 -34.28894 -33.14061 -32.50237 -31.92510 -29.51573 -28.92136 -26.91553 -24.95770 -23.94810 -22.66027 -22.14308 -21.92295 -20.56226 -19.51932 -18.63684 -18.35050 -17.56109 -17.45940 -16.87323 -16.70486 -16.49502 -16.26853 -16.08453 -15.62114 -15.28660 -15.16760 -14.94959 -14.44754 -14.37959 -14.17034 -14.05464 -13.78255 -13.13667 -12.88284 -12.85121 -12.77115 -12.56282 -12.38649 -12.21339 -11.84401 -11.82437 -11.68144 -11.42318 -11.22673 -10.82430 -10.11497 -9.92765 -9.42596 -9.00238 -8.26186 -6.42482 0.42014 0.46587 0.51357 1.20681 1.48143 1.48875 1.61780 1.91955 2.01093 2.33663 2.47461 2.81757 3.10118 3.15796 3.84531 3.96593 3.98225 4.06774 4.07864 4.14852 4.40193 4.49798 4.64984 4.87486 4.91851 4.98138 5.14214 5.17933 5.23998 5.26869 5.38775 5.39713 5.42601 5.45078 5.73027 5.77836 5.85403 5.91274 6.15413 6.39996 6.63177 6.72882 7.21082 7.27297 7.43780 8.86119 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.002488 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.268350 B =11250.845990 C =13133.366474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.132 4.132 3 C -0.087 4.087 4 C -0.165 4.165 5 C 0.103 3.897 6 O -0.319 6.319 7 C 0.053 3.947 8 C 0.519 3.481 9 O -0.562 6.562 10 N -0.506 5.506 11 N -0.531 5.531 12 C 0.705 3.295 13 O -0.625 6.625 14 N -0.712 5.712 15 C 0.279 3.721 16 C -0.551 4.551 17 H 0.092 0.908 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.985 3.015 21 H -0.247 1.247 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.207 4.207 25 C -0.087 4.087 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.439 0.561 34 H 0.439 0.561 35 H 0.403 0.597 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.268 0.732 39 H 0.156 0.844 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.147 12.188 -0.016 30.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.133 4.133 3 C -0.105 4.105 4 C -0.184 4.184 5 C 0.059 3.941 6 O -0.233 6.233 7 C -0.026 4.026 8 C 0.305 3.695 9 O -0.438 6.438 10 N -0.261 5.261 11 N -0.287 5.287 12 C 0.404 3.596 13 O -0.502 6.502 14 N -0.367 5.367 15 C 0.156 3.844 16 C -0.589 4.589 17 H 0.109 0.891 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.808 3.192 21 H -0.170 1.170 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.225 4.225 25 C -0.105 4.105 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.163 0.837 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.284 0.716 34 H 0.284 0.716 35 H 0.240 0.760 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.077 0.923 39 H 0.173 0.827 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.685 12.940 -0.016 29.657 hybrid contribution 0.196 -0.832 -0.006 0.855 sum -26.489 12.108 -0.022 29.125 Atomic orbital electron populations 1.20774 0.89412 1.03536 1.02865 1.20235 0.97639 0.92990 1.02395 1.21110 0.92373 0.99066 0.97968 1.20640 0.94620 0.96508 1.06608 1.19214 0.81118 0.95398 0.98407 1.86075 1.17422 1.30429 1.89339 1.22473 0.86039 0.86037 1.08009 1.20853 0.89066 0.83426 0.76124 1.90775 1.77764 1.24976 1.50312 1.44601 0.94099 1.10999 1.76416 1.44412 0.93674 1.09089 1.81529 1.15941 0.84165 0.81062 0.78388 1.90965 1.13796 1.84432 1.61055 1.45278 1.10822 1.03618 1.77013 1.18586 0.89306 0.81789 0.94680 1.21608 0.94447 0.90087 1.52736 0.89052 1.26053 0.96127 1.03503 0.93993 1.70146 1.10189 1.26638 1.49974 0.85104 0.79340 0.77377 0.77335 1.16966 1.20925 1.20929 1.21576 0.96001 0.97204 1.07756 1.21203 0.93302 0.98772 0.97232 0.90714 0.90741 0.90958 0.83668 0.85556 0.84686 0.84676 0.71636 0.71611 0.75989 0.98987 0.98994 0.92332 0.82669 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 71.24 0.71 -0.09 16 2 C -0.13 -1.64 5.88 -19.85 -0.12 -1.75 16 3 C -0.09 -1.22 9.69 22.25 0.22 -1.00 16 4 C -0.17 -2.96 9.99 22.36 0.22 -2.73 16 5 C 0.10 1.88 6.69 22.50 0.15 2.03 16 6 O -0.32 -6.75 9.67 -73.44 -0.71 -7.46 16 7 C 0.05 0.72 5.22 71.23 0.37 1.09 16 8 C 0.52 11.41 8.02 87.65 0.70 12.12 16 9 O -0.56 -18.04 16.34 16.02 0.26 -17.78 16 10 N -0.51 -10.73 6.26 -173.53 -1.09 -11.82 16 11 N -0.53 -16.16 6.26 -184.75 -1.16 -17.32 16 12 C 0.71 28.00 8.68 179.06 1.55 29.56 16 13 O -0.62 -31.25 17.18 -4.00 -0.07 -31.32 16 14 N -0.71 -27.54 5.51 -482.30 -2.66 -30.19 16 15 C 0.28 14.38 5.43 85.63 0.46 14.84 16 16 C -0.55 -27.57 9.28 25.60 0.24 -27.33 16 17 H 0.09 3.96 7.60 -2.91 -0.02 3.93 16 18 C 0.00 0.15 5.46 84.65 0.46 0.62 16 19 N -0.93 -53.96 13.29 21.45 0.28 -53.67 16 20 Si 0.98 39.64 29.54 68.60 2.03 41.66 16 21 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 22 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 24 C -0.21 -2.71 9.04 22.36 0.20 -2.51 16 25 C -0.09 -1.03 9.69 22.25 0.22 -0.82 16 26 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.07 0.42 8.08 -2.39 -0.02 0.40 16 28 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 29 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 30 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.14 0.92 7.67 -2.39 -0.02 0.90 16 32 H 0.14 0.92 7.65 -2.39 -0.02 0.90 16 33 H 0.44 6.36 6.70 -213.32 -1.43 4.93 16 34 H 0.44 13.68 8.10 -213.31 -1.73 11.95 16 35 H 0.40 11.75 6.24 -92.71 -0.58 11.18 16 36 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 37 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.16 1.10 6.30 -2.91 -0.02 1.08 16 40 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -79.52 351.78 -0.34 -79.86 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -2.63 Total: 24.00 kcal Atomic # 6 Polarization: 18.64 SS G_CDS: 5.40 Total: 24.03 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -4.62 Total: -113.00 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -0.52 Total: -56.55 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.66 kcal Total: -79.52 -0.34 -79.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787366607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.203 kcal (2) G-P(sol) polarization free energy of solvation -79.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds