Wall clock time and date at job start Tue Mar 31 2020 10:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41594 * 114.00524 * 2 1 4 4 C 1.46502 * 120.00194 * 92.96136 * 3 2 1 5 5 C 1.53008 * 109.46917 * 69.48229 * 4 3 2 6 6 C 1.53177 * 109.54052 * 59.98295 * 5 4 3 7 7 C 1.53097 * 109.16290 * 176.84839 * 6 5 4 8 8 O 1.42907 * 109.41315 * 302.39311 * 7 6 5 9 9 C 1.42902 * 114.09830 * 61.15674 * 8 7 6 10 10 C 1.53094 * 109.41261 * 298.83998 * 9 8 7 11 11 S 1.65600 * 119.99883 * 272.96717 * 3 2 1 12 12 O 1.42094 * 104.27615 * 31.06950 * 11 3 2 13 13 O 1.42104 * 104.27721 * 158.92756 * 11 3 2 14 14 C 1.81395 * 104.44830 * 274.99595 * 11 3 2 15 15 C 1.53006 * 109.47136 * 179.97438 * 14 11 3 16 16 C 1.50703 * 109.46832 * 180.02562 * 15 14 11 17 17 H 1.07996 * 120.00579 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99617 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99702 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99780 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47366 * 60.00411 * 20 18 16 22 22 H 1.48498 * 109.47117 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47440 * 299.99954 * 20 18 16 24 24 H 1.08999 * 109.47685 * 175.05360 * 1 2 3 25 25 H 1.09006 * 109.47244 * 295.05846 * 1 2 3 26 26 H 1.09001 * 109.46744 * 55.04924 * 1 2 3 27 27 H 1.09000 * 109.47429 * 309.48350 * 4 3 2 28 28 H 1.08997 * 109.47482 * 189.47942 * 4 3 2 29 29 H 1.08998 * 109.61629 * 299.76359 * 5 4 3 30 30 H 1.08997 * 109.52654 * 296.75253 * 6 5 4 31 31 H 1.08996 * 109.52708 * 56.94470 * 6 5 4 32 32 H 1.09000 * 109.48265 * 182.40853 * 7 6 5 33 33 H 1.08996 * 109.48049 * 62.37042 * 7 6 5 34 34 H 1.09004 * 109.48158 * 178.86232 * 9 8 7 35 35 H 1.08996 * 109.48966 * 58.82788 * 9 8 7 36 36 H 1.08997 * 109.52283 * 297.70083 * 10 9 8 37 37 H 1.09006 * 109.51882 * 177.51766 * 10 9 8 38 38 H 1.09005 * 109.47585 * 300.00253 * 14 11 3 39 39 H 1.09003 * 109.47440 * 60.00070 * 14 11 3 40 40 H 1.08992 * 109.47190 * 300.00433 * 15 14 11 41 41 H 1.08996 * 109.46681 * 60.00287 * 15 14 11 42 42 H 0.97001 * 119.99926 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3629 1.9360 1.2670 5 6 3.5539 1.2054 1.8908 6 6 4.7487 1.2634 0.9341 7 6 5.9574 0.5993 1.5988 8 8 6.2409 1.2577 2.8351 9 6 5.1768 1.1949 3.7869 10 6 3.9368 1.8830 3.2100 11 16 2.2740 2.0800 -1.4322 12 8 1.2392 1.6145 -2.2874 13 8 2.3624 3.4508 -1.0681 14 6 3.8865 1.4646 -1.9906 15 6 4.2511 2.1248 -3.3219 16 6 5.5904 1.6130 -3.7861 17 1 6.1276 0.8891 -3.1914 18 6 6.1300 2.0691 -4.9701 19 7 5.4761 2.9511 -5.6941 20 14 7.7904 1.4354 -5.5452 21 1 7.7229 -0.0371 -5.7255 22 1 8.1449 2.0769 -6.8367 23 1 8.8238 1.7629 -4.5303 24 1 -0.3634 -1.0238 -0.0886 25 1 -0.3634 0.4353 0.9310 26 1 -0.3633 0.5887 -0.8423 27 1 1.5133 1.8938 1.9486 28 1 2.6305 2.9766 1.0839 29 1 3.2875 0.1654 2.0788 30 1 4.5037 0.7350 0.0128 31 1 4.9836 2.3033 0.7071 32 1 6.8222 0.6755 0.9397 33 1 5.7363 -0.4510 1.7887 34 1 5.4793 1.7003 4.7041 35 1 4.9455 0.1525 4.0055 36 1 4.1553 2.9354 3.0291 37 1 3.1111 1.7976 3.9165 38 1 4.6450 1.7050 -1.2456 39 1 3.8369 0.3838 -2.1230 40 1 3.4926 1.8841 -4.0666 41 1 4.3006 3.2056 -3.1899 42 1 5.8559 3.2723 -6.5269 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800981114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:56 Heat of formation + Delta-G solvation = -142.952938 kcal Electronic energy + Delta-G solvation = -25160.684891 eV Core-core repulsion = 21462.258690 eV Total energy + Delta-G solvation = -3698.426200 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44174 -38.81644 -38.40041 -37.21939 -36.11493 -35.85797 -33.28446 -32.78201 -31.88718 -28.41097 -27.61886 -26.94863 -24.60031 -23.86015 -23.24128 -21.09198 -20.63687 -19.32974 -18.57360 -18.14472 -17.38509 -17.13353 -16.85829 -16.72899 -16.55677 -16.20865 -15.69513 -15.56454 -15.35366 -15.15850 -14.63485 -14.48377 -14.02846 -13.79248 -13.61079 -13.50728 -13.37572 -13.21603 -13.17269 -12.90078 -12.72670 -12.60312 -12.25617 -12.23447 -12.19908 -11.93384 -11.76671 -11.42039 -11.34641 -11.22745 -11.03457 -10.63559 -10.58182 -10.18243 -8.25342 -6.38943 -1.05429 1.00748 1.42002 1.45144 1.53079 2.38480 2.53806 2.65070 3.03910 3.08461 3.16873 3.72530 3.75898 3.85389 3.98436 4.03705 4.11478 4.30264 4.36512 4.43363 4.48557 4.50164 4.56831 4.61372 4.65826 4.77099 4.80750 4.85481 4.89284 4.92459 5.03558 5.15686 5.19744 5.24978 5.25452 5.46608 5.68558 5.88918 6.05920 6.33660 6.73683 7.31049 8.86830 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.012231 B = 0.005447 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.641611 B = 5139.265363 C = 6777.765209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 O -0.125 6.125 3 N -0.864 5.864 4 C 0.104 3.896 5 C -0.096 4.096 6 C -0.186 4.186 7 C 0.065 3.935 8 O -0.406 6.406 9 C 0.055 3.945 10 C -0.147 4.147 11 S 2.610 3.390 12 O -0.983 6.983 13 O -0.971 6.971 14 C -0.592 4.592 15 C 0.024 3.976 16 C -0.536 4.536 17 H 0.077 0.923 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.263 1.263 24 H 0.133 0.867 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.143 0.857 40 H 0.006 0.994 41 H 0.009 0.991 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 -6.805 20.543 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 O -0.132 6.132 3 N -0.740 5.740 4 C -0.019 4.019 5 C -0.116 4.116 6 C -0.224 4.224 7 C -0.012 4.012 8 O -0.325 6.325 9 C -0.021 4.021 10 C -0.186 4.186 11 S 2.708 3.292 12 O -0.974 6.974 13 O -0.962 6.962 14 C -0.724 4.724 15 C -0.015 4.015 16 C -0.575 4.575 17 H 0.095 0.905 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.795 3.205 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.187 1.187 24 H 0.151 0.849 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.025 0.975 41 H 0.027 0.973 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.040 -6.168 20.078 21.855 hybrid contribution 0.547 -0.381 -0.887 1.110 sum -5.492 -6.549 19.191 21.008 Atomic orbital electron populations 1.23711 0.80681 1.05674 1.01961 1.90501 1.21366 1.04677 1.96699 1.60035 1.72204 1.20374 1.21396 1.22033 0.98991 0.96487 0.84427 1.21532 0.93436 1.01526 0.95102 1.22809 0.96876 1.02176 1.00502 1.22544 0.97661 0.95680 0.85299 1.87914 1.41071 1.77739 1.25819 1.22761 0.86804 1.00701 0.91810 1.22218 0.99443 1.00514 0.96396 1.05254 0.77916 0.73618 0.72424 1.93480 1.54993 1.82051 1.66861 1.93539 1.88435 1.32091 1.82103 1.30713 1.20045 1.12718 1.08972 1.18822 0.98151 0.95174 0.89310 1.21441 1.03682 1.25704 1.06716 0.90527 1.26070 1.02142 0.95027 0.96693 1.70088 1.40602 1.31689 1.14954 0.85404 0.78643 0.78882 0.77602 1.18814 1.20983 1.18746 0.84949 0.90999 0.93688 0.87444 0.87889 0.89007 0.89968 0.91735 0.89048 0.91769 0.87451 0.92071 0.91266 0.88019 0.82977 0.83918 0.97534 0.97251 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.45 11.25 113.37 1.28 0.82 16 2 O -0.13 -3.17 11.35 -28.14 -0.32 -3.49 16 3 N -0.86 -23.64 2.58 -187.48 -0.48 -24.12 16 4 C 0.10 2.23 5.56 86.38 0.48 2.71 16 5 C -0.10 -1.83 2.49 -10.67 -0.03 -1.85 16 6 C -0.19 -4.47 3.94 30.69 0.12 -4.34 16 7 C 0.06 1.45 6.84 72.01 0.49 1.95 16 8 O -0.41 -9.52 10.77 -148.98 -1.60 -11.12 16 9 C 0.06 0.88 6.84 72.01 0.49 1.38 16 10 C -0.15 -2.22 5.42 30.68 0.17 -2.05 16 11 S 2.61 96.45 5.59 -56.49 -0.32 96.13 16 12 O -0.98 -41.77 16.35 -122.35 -2.00 -43.77 16 13 O -0.97 -39.47 16.37 -127.65 -2.09 -41.56 16 14 C -0.59 -23.04 4.62 71.98 0.33 -22.70 16 15 C 0.02 1.28 4.98 29.85 0.15 1.43 16 16 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16 17 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 18 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 19 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 20 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.04 1.15 6.87 -2.39 -0.02 1.13 16 27 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.10 2.43 6.63 -2.39 -0.02 2.41 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 2.09 4.64 -2.39 -0.01 2.08 16 31 H 0.06 1.72 7.83 -2.39 -0.02 1.70 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.15 5.29 4.89 -2.39 -0.01 5.28 16 39 H 0.14 5.02 8.14 -2.39 -0.02 5.00 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -73.36 346.43 0.68 -72.68 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 1.00 Total: 17.92 kcal Atomic # 6 Polarization: -55.74 SS G_CDS: 4.18 Total: -51.56 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -0.20 Total: -80.43 kcal Atomic # 8 Polarization: -93.93 SS G_CDS: -6.01 Total: -99.95 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 96.45 SS G_CDS: -0.32 Total: 96.13 kcal Total: -73.36 0.68 -72.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800981114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.268 kcal (2) G-P(sol) polarization free energy of solvation -73.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds