Wall clock time and date at job start Tue Mar 31 2020 10:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 N 1.41601 * 113.99837 * 2 1 4 4 C 1.29337 * 120.00024 * 180.02562 * 3 2 1 5 5 C 1.47605 * 120.00074 * 180.02562 * 4 3 2 6 6 C 1.39731 * 120.00021 * 180.02562 * 5 4 3 7 7 C 1.37638 * 120.00302 * 180.27462 * 6 5 4 8 8 C 1.39749 * 119.99774 * 359.44807 * 7 6 5 9 9 C 1.47672 * 120.00108 * 180.27875 * 8 7 6 10 10 O 1.21483 * 119.99754 * 180.29126 * 9 8 7 11 11 O 1.34727 * 120.00119 * 0.29162 * 9 8 7 12 12 C 1.45193 * 116.99865 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46960 * 179.97438 * 12 11 9 14 14 O 1.42897 * 109.47170 * 65.00175 * 13 12 11 15 15 C 1.42898 * 113.99949 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47077 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99946 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00069 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99733 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99728 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47392 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47064 * 119.99998 * 20 18 16 23 23 H 1.48502 * 109.46846 * 239.99552 * 20 18 16 24 24 C 1.39740 * 119.99461 * 0.57077 * 8 7 6 25 25 C 1.37639 * 119.99990 * 359.70319 * 24 8 7 26 26 H 1.08994 * 109.47333 * 59.99803 * 1 2 3 27 27 H 1.09000 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46826 * 299.99715 * 1 2 3 29 29 H 1.08001 * 119.99925 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.99448 * 359.97438 * 6 5 4 31 31 H 1.07998 * 120.00344 * 179.69666 * 7 6 5 32 32 H 1.08997 * 109.47297 * 299.99967 * 12 11 9 33 33 H 1.08997 * 109.47436 * 60.00222 * 12 11 9 34 34 H 1.09002 * 109.46968 * 185.00190 * 13 12 11 35 35 H 1.08999 * 109.47309 * 305.00087 * 13 12 11 36 36 H 1.08994 * 109.47421 * 299.99594 * 15 14 13 37 37 H 1.09004 * 109.47162 * 60.00411 * 15 14 13 38 38 H 0.97004 * 119.99879 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.00319 * 179.69038 * 24 8 7 40 40 H 1.08001 * 120.00000 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 3.2912 1.4288 -0.0005 5 6 3.8916 2.7773 0.0001 6 6 5.2812 2.9234 -0.0010 7 6 5.8411 4.1807 0.0052 8 6 5.0197 5.3113 0.0010 9 6 5.6203 6.6604 0.0015 10 8 4.9062 7.6432 0.0031 11 8 6.9602 6.8013 0.0001 12 6 7.4805 8.1568 0.0001 13 6 9.0100 8.1160 -0.0010 14 8 9.4701 7.5345 -1.2225 15 6 10.8928 7.4494 -1.3260 16 6 11.2640 6.8248 -2.6463 17 1 10.4907 6.5226 -3.3371 18 6 12.5907 6.6381 -2.9720 19 7 13.5323 7.0056 -2.1306 20 14 13.0507 5.8633 -4.6083 21 1 11.8160 5.5409 -5.3679 22 1 13.8797 6.8148 -5.3909 23 1 13.8221 4.6176 -4.3666 24 6 3.6300 5.1652 0.0025 25 6 3.0702 3.9078 0.0019 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9261 0.5551 -0.0005 30 1 5.9160 2.0496 -0.0018 31 1 6.9152 4.2936 0.0093 32 1 7.1300 8.6805 -0.8893 33 1 7.1320 8.6797 0.8906 34 1 9.4005 9.1297 0.0886 35 1 9.3581 7.5168 0.8404 36 1 11.3221 8.4493 -1.2642 37 1 11.2803 6.8366 -0.5121 38 1 14.4657 6.8740 -2.3595 39 1 2.9951 6.0389 0.0043 40 1 1.9961 3.7948 0.0035 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815168607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:39 Heat of formation + Delta-G solvation = -92.729405 kcal Electronic energy + Delta-G solvation = -23206.649948 eV Core-core repulsion = 19374.957652 eV Total energy + Delta-G solvation = -3831.692296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.57454 -39.20214 -37.80407 -37.05261 -36.03130 -34.65737 -32.79199 -31.40820 -31.25251 -29.93039 -27.14839 -26.86633 -25.08505 -23.23767 -22.47935 -22.18192 -21.48100 -20.50595 -18.20856 -17.73430 -17.05270 -16.52561 -16.50277 -16.25605 -15.63592 -15.38301 -15.31697 -14.89278 -14.71460 -14.53821 -14.26766 -13.78156 -13.59135 -13.53743 -12.92567 -12.80658 -12.73684 -12.25095 -12.15683 -11.98103 -11.48674 -11.39439 -10.95373 -10.89640 -10.77247 -10.49627 -10.46084 -10.40047 -10.38330 -10.06482 -9.32438 -9.13362 -8.92176 -8.90257 -8.23637 -6.13895 -4.15451 0.02774 1.08856 1.68953 2.23710 2.60436 2.68498 3.27731 3.34426 3.40981 3.58004 4.18492 4.30831 4.51921 4.57832 4.65504 4.71873 4.90586 4.96808 4.97304 5.00377 5.12830 5.19998 5.21999 5.22881 5.43014 5.45751 5.67365 5.73185 5.83596 5.87232 5.94604 6.02401 6.06762 6.16091 6.47356 6.51334 7.01891 7.03267 7.37612 7.75893 7.77795 8.10486 8.50030 8.97525 9.49458 10.97629 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.002401 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.815990 B =11658.797575 C =13226.352889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.243 6.243 3 N -0.335 5.335 4 C 0.149 3.851 5 C -0.033 4.033 6 C -0.097 4.097 7 C -0.060 4.060 8 C -0.103 4.103 9 C 0.505 3.495 10 O -0.511 6.511 11 O -0.335 6.335 12 C 0.075 3.925 13 C 0.061 3.939 14 O -0.391 6.391 15 C 0.194 3.806 16 C -0.514 4.514 17 H 0.067 0.933 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.062 4.062 25 C -0.095 4.095 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.130 0.870 30 H 0.141 0.859 31 H 0.152 0.848 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.006 0.994 37 H 0.008 0.992 38 H 0.264 0.736 39 H 0.142 0.858 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.093 -9.603 7.775 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.258 6.258 3 N -0.080 5.080 4 C -0.061 4.061 5 C -0.034 4.034 6 C -0.117 4.117 7 C -0.078 4.078 8 C -0.105 4.105 9 C 0.350 3.650 10 O -0.402 6.402 11 O -0.250 6.250 12 C 0.002 3.998 13 C -0.016 4.016 14 O -0.311 6.311 15 C 0.120 3.880 16 C -0.552 4.552 17 H 0.086 0.914 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.080 4.080 25 C -0.115 4.115 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.159 0.841 31 H 0.170 0.830 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.160 0.840 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.009 -9.170 7.646 25.922 hybrid contribution 0.991 -0.628 -0.579 1.309 sum -22.017 -9.798 7.066 25.114 Atomic orbital electron populations 1.22736 0.78489 1.02621 1.01323 1.89854 1.22358 1.20012 1.93595 1.76601 1.13891 1.04435 1.13065 1.24308 0.92081 0.96794 0.92906 1.18638 0.93267 0.90292 1.01236 1.21248 0.93058 0.98185 0.99228 1.21564 1.01438 0.90825 0.94012 1.19366 0.93866 0.90796 1.06502 1.21142 0.81426 0.89541 0.72894 1.90816 1.62631 1.40517 1.46193 1.86634 1.21740 1.33639 1.83029 1.23260 0.94005 0.79841 1.02715 1.22329 0.90473 0.98307 0.90526 1.87920 1.26366 1.81965 1.34801 1.20247 0.74367 0.95865 0.97555 1.21087 0.92065 1.40091 1.01984 0.91443 1.24955 0.95957 0.95777 0.97861 1.69969 1.00250 1.47601 1.35930 0.86280 0.78532 0.78805 0.82880 1.19452 1.20850 1.20810 1.21228 0.93128 0.98206 0.95456 1.21277 1.00597 0.90846 0.98740 0.93035 0.88502 0.93078 0.85303 0.84082 0.83047 0.90317 0.90273 0.91844 0.93122 0.97599 0.97456 0.92683 0.84038 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 11.47 101.05 1.16 1.45 16 2 O -0.24 -2.45 11.72 -11.47 -0.13 -2.58 16 3 N -0.33 -3.39 10.45 32.13 0.34 -3.06 16 4 C 0.15 1.28 10.90 -14.78 -0.16 1.12 16 5 C -0.03 -0.29 5.87 -104.96 -0.62 -0.91 16 6 C -0.10 -0.83 9.77 -39.24 -0.38 -1.21 16 7 C -0.06 -0.65 9.60 -39.24 -0.38 -1.02 16 8 C -0.10 -1.26 5.88 -104.92 -0.62 -1.88 16 9 C 0.51 7.55 7.89 34.58 0.27 7.83 16 10 O -0.51 -8.46 16.12 -19.25 -0.31 -8.77 16 11 O -0.33 -5.41 9.43 -43.35 -0.41 -5.82 16 12 C 0.08 1.16 5.85 37.16 0.22 1.38 16 13 C 0.06 1.08 6.33 37.16 0.24 1.32 16 14 O -0.39 -9.24 10.30 -38.80 -0.40 -9.64 16 15 C 0.19 5.20 5.69 36.01 0.20 5.41 16 16 C -0.51 -14.96 9.43 -34.44 -0.32 -15.28 16 17 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 20 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.06 -0.65 9.58 -39.24 -0.38 -1.03 16 25 C -0.09 -0.88 9.56 -39.24 -0.38 -1.26 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 30 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 31 H 0.15 1.66 7.60 -52.49 -0.40 1.26 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.14 1.40 7.64 -52.49 -0.40 1.00 16 40 H 0.14 1.17 7.54 -52.49 -0.40 0.77 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -34.08 363.71 -6.35 -40.43 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -5.39 Total: -4.25 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.24 Total: -2.60 kcal Atomic # 7 Polarization: -29.89 SS G_CDS: 1.07 Total: -28.82 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -1.25 Total: -26.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.08 -6.35 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815168607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.301 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds