Wall clock time and date at job start Tue Mar 31 2020 10:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86794 * 120.00252 * 2 1 4 4 H 1.48500 * 109.46990 * 90.00525 * 3 2 1 5 5 H 1.48503 * 109.47303 * 210.00339 * 3 2 1 6 6 H 1.48497 * 109.47372 * 330.00611 * 3 2 1 7 7 C 1.40030 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00306 * 15.95513 * 7 2 1 9 9 C 1.41337 * 119.99630 * 195.95740 * 7 2 1 10 10 C 1.40608 * 119.78463 * 188.65439 * 9 7 2 11 11 C 1.38314 * 119.13031 * 179.70233 * 10 9 7 12 12 C 1.38695 * 118.66655 * 0.56475 * 11 10 9 13 13 C 1.39641 * 119.49577 * 359.71933 * 12 11 10 14 14 N 1.39249 * 119.57287 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00231 * 18.78570 * 14 13 12 16 16 O 1.21581 * 119.99979 * 5.79082 * 15 14 13 17 17 N 1.34767 * 120.00441 * 185.78464 * 15 14 13 18 18 C 1.46504 * 120.00291 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47007 * 180.02562 * 18 17 15 20 20 C 1.53005 * 109.47153 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47516 * 179.97438 * 20 19 18 22 22 C 1.50691 * 109.47115 * 179.97438 * 21 20 19 23 23 O 1.20830 * 120.00290 * 359.97438 * 22 21 20 24 24 O 1.34235 * 119.99990 * 180.02562 * 22 21 20 25 25 N 1.31928 * 120.85228 * 359.97438 * 13 12 11 26 26 H 0.96998 * 119.99921 * 174.92941 * 1 2 3 27 27 H 1.07998 * 120.43541 * 0.02562 * 10 9 7 28 28 H 1.08000 * 120.66754 * 180.25973 * 11 10 9 29 29 H 1.07999 * 120.25122 * 179.74544 * 12 11 10 30 30 H 0.96999 * 120.00037 * 198.78123 * 14 13 12 31 31 H 0.97007 * 120.00028 * 0.02562 * 17 15 14 32 32 H 1.08991 * 109.47171 * 300.00475 * 18 17 15 33 33 H 1.09000 * 109.46633 * 60.00927 * 18 17 15 34 34 H 1.09005 * 109.47382 * 299.99869 * 19 18 17 35 35 H 1.08995 * 109.47549 * 60.00266 * 19 18 17 36 36 H 1.09005 * 109.46549 * 299.99986 * 20 19 18 37 37 H 1.09008 * 109.47229 * 59.99717 * 20 19 18 38 38 H 1.09002 * 109.46632 * 300.00041 * 21 20 19 39 39 H 1.08997 * 109.46640 * 59.99507 * 21 20 19 40 40 H 0.96703 * 117.00082 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4891 2.0462 1.4001 5 1 3.5391 1.4401 -0.7001 6 1 1.4390 2.6527 -0.6999 7 6 2.0075 -1.2127 -0.0005 8 1 1.4987 -2.1299 -0.2580 9 6 3.3801 -1.2365 0.3360 10 6 4.1222 -2.4176 0.1594 11 6 5.4659 -2.4239 0.4873 12 6 6.0331 -1.2632 0.9919 13 6 5.2416 -0.1236 1.1499 14 7 5.8092 1.0425 1.6569 15 6 7.1471 1.2042 1.6379 16 8 7.8510 0.3819 1.0845 17 7 7.7046 2.2776 2.2323 18 6 9.1590 2.4531 2.2122 19 6 9.5276 3.7406 2.9518 20 6 11.0464 3.9243 2.9303 21 6 11.4151 5.2122 3.6694 22 6 12.9110 5.3927 3.6486 23 8 13.6106 4.5748 3.0994 24 8 13.4664 6.4615 4.2411 25 7 3.9630 -0.1375 0.8251 26 1 -0.4850 -0.8367 -0.0742 27 1 3.6505 -3.3067 -0.2321 28 1 6.0604 -3.3162 0.3576 29 1 7.0790 -1.2407 1.2602 30 1 5.2418 1.7384 2.0237 31 1 7.1430 2.9336 2.6742 32 1 9.6343 1.6038 2.7029 33 1 9.5031 2.5155 1.1798 34 1 9.0523 4.5902 2.4614 35 1 9.1835 3.6779 3.9842 36 1 11.5220 3.0748 3.4204 37 1 11.3902 3.9872 1.8977 38 1 10.9394 6.0614 3.1788 39 1 11.0712 5.1497 4.7018 40 1 14.4298 6.5343 4.2013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:17 Heat of formation + Delta-G solvation = -107.429277 kcal Electronic energy + Delta-G solvation = -23735.410665 eV Core-core repulsion = 19935.373686 eV Total energy + Delta-G solvation = -3800.036979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.69792 -40.28257 -38.34978 -36.88156 -36.23451 -34.49784 -34.02086 -33.39962 -31.02803 -30.29302 -28.99393 -25.50544 -25.07677 -22.61298 -21.88138 -21.65108 -21.17776 -20.18802 -18.68505 -18.45559 -17.82220 -17.11800 -16.88128 -16.72978 -15.93692 -15.39594 -15.01012 -14.92562 -14.65343 -14.07474 -13.87898 -13.74233 -13.50060 -13.04838 -12.82396 -12.58252 -12.26833 -12.12744 -12.09813 -11.93787 -11.82179 -11.61968 -11.18583 -11.12707 -11.02589 -10.85357 -10.29952 -9.96383 -9.74981 -9.38508 -9.08847 -9.02058 -8.47430 -7.87689 -7.34515 -7.24140 -4.72283 1.74797 2.42122 2.51710 2.71834 2.79428 3.43014 3.47665 3.65193 3.91104 4.18928 4.28748 4.34981 4.41865 4.59605 4.63581 4.80693 4.81635 5.04991 5.15241 5.30280 5.40695 5.57776 5.64371 5.81001 5.83303 5.90680 6.04653 6.13394 6.35002 6.47018 6.58889 6.71694 6.93343 7.21634 7.37563 7.41916 7.47308 7.67094 7.80904 7.95044 8.23558 8.37228 8.67182 8.78488 9.48394 10.00080 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.002354 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.372548 B =11891.925664 C =12804.923908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.049 3.951 3 Si 1.145 2.855 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.328 1.328 7 C -0.483 4.483 8 H 0.083 0.917 9 C 0.276 3.724 10 C -0.280 4.280 11 C -0.036 4.036 12 C -0.310 4.310 13 C 0.400 3.600 14 N -0.667 5.667 15 C 0.708 3.292 16 O -0.564 6.564 17 N -0.748 5.748 18 C 0.139 3.861 19 C -0.131 4.131 20 C -0.108 4.108 21 C -0.113 4.113 22 C 0.476 3.524 23 O -0.514 6.514 24 O -0.520 6.520 25 N -0.597 5.597 26 H 0.284 0.716 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.141 0.859 30 H 0.403 0.597 31 H 0.396 0.604 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.188 13.397 9.185 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.173 4.173 3 Si 0.978 3.022 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.260 1.260 7 C -0.515 4.515 8 H 0.101 0.899 9 C 0.152 3.848 10 C -0.303 4.303 11 C -0.061 4.061 12 C -0.335 4.335 13 C 0.168 3.832 14 N -0.314 5.314 15 C 0.408 3.592 16 O -0.439 6.439 17 N -0.404 5.404 18 C 0.015 3.985 19 C -0.169 4.169 20 C -0.146 4.146 21 C -0.151 4.151 22 C 0.319 3.681 23 O -0.402 6.402 24 O -0.333 6.333 25 N -0.322 5.322 26 H 0.095 0.905 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.158 0.842 30 H 0.238 0.762 31 H 0.230 0.770 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 18.841 14.631 8.725 25.400 hybrid contribution 0.582 -1.859 0.224 1.961 sum 19.422 12.772 8.949 24.909 Atomic orbital electron populations 1.70616 1.08255 1.32989 1.30897 1.27651 0.95230 1.05959 0.88454 0.82115 0.72760 0.70047 0.77282 1.21613 1.20721 1.26028 1.20642 0.93158 0.96978 1.40732 0.89860 1.18170 0.92909 0.86001 0.87737 1.21597 0.94674 0.99826 1.14177 1.20921 0.94310 0.96324 0.94504 1.21547 1.01975 0.92761 1.17178 1.17783 0.89517 0.83857 0.92067 1.42319 1.05563 1.20418 1.63124 1.15714 0.81684 0.82162 0.79641 1.90859 1.61284 1.43360 1.48436 1.45102 1.08102 1.26109 1.61136 1.21148 0.79007 0.97216 1.01143 1.21787 0.95719 0.97875 1.01536 1.21346 0.95209 0.96151 1.01894 1.21393 0.87615 1.01334 1.04712 1.23617 0.92576 0.77835 0.74106 1.90760 1.64397 1.43277 1.41748 1.84542 1.29876 1.46279 1.72569 1.66128 1.10173 1.30324 1.25588 0.90493 0.87770 0.87707 0.84213 0.76245 0.77004 0.91325 0.91330 0.90771 0.90786 0.90384 0.90376 0.87388 0.87410 0.73077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.87 13.65 55.55 0.76 -21.12 16 2 C 0.05 1.32 5.51 -17.34 -0.10 1.23 16 3 Si 1.14 27.60 25.93 -169.99 -4.41 23.19 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.97 6.55 56.52 0.37 -6.60 16 6 H -0.33 -7.76 7.11 56.52 0.40 -7.36 16 7 C -0.48 -13.25 9.51 -37.73 -0.36 -13.61 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 9 C 0.28 7.35 6.27 -85.00 -0.53 6.82 16 10 C -0.28 -6.83 9.83 -38.66 -0.38 -7.21 16 11 C -0.04 -0.82 10.15 -39.38 -0.40 -1.22 16 12 C -0.31 -7.18 8.83 -38.89 -0.34 -7.52 16 13 C 0.40 9.33 7.51 -154.99 -1.16 8.16 16 14 N -0.67 -12.44 5.42 -15.79 -0.09 -12.52 16 15 C 0.71 12.07 8.40 -86.93 -0.73 11.34 16 16 O -0.56 -11.62 13.14 5.29 0.07 -11.55 16 17 N -0.75 -8.50 5.56 -65.23 -0.36 -8.86 16 18 C 0.14 1.31 5.67 -4.04 -0.02 1.29 16 19 C -0.13 -0.72 5.33 -26.73 -0.14 -0.86 16 20 C -0.11 -0.62 4.50 -26.73 -0.12 -0.74 16 21 C -0.11 -0.48 5.81 -27.89 -0.16 -0.65 16 22 C 0.48 3.21 8.33 36.00 0.30 3.51 16 23 O -0.51 -5.38 16.74 -18.75 -0.31 -5.70 16 24 O -0.52 -2.53 13.42 -39.27 -0.53 -3.06 16 25 N -0.60 -15.27 5.07 -10.26 -0.05 -15.32 16 26 H 0.28 7.39 8.73 -40.82 -0.36 7.03 16 27 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 28 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.14 3.20 5.33 -52.51 -0.28 2.92 16 30 H 0.40 6.42 8.84 -40.82 -0.36 6.06 16 31 H 0.40 3.26 8.49 -40.82 -0.35 2.91 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.08 0.53 8.10 -51.92 -0.42 0.11 16 38 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.41 0.48 9.10 45.56 0.41 0.90 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -35.47 345.07 -8.28 -43.75 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.40 Total: 5.44 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -4.15 Total: 0.54 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.26 Total: -57.82 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.77 Total: -20.30 kcal Atomic # 14 Polarization: 27.60 SS G_CDS: -4.41 Total: 23.19 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.47 -8.28 -43.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.679 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds