Wall clock time and date at job start Tue Mar 31 2020 11:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46732 * 2 1 4 4 C 1.50694 * 109.47229 * 120.00102 * 2 1 3 5 5 H 1.07999 * 120.00171 * 120.00502 * 4 2 1 6 6 C 1.37876 * 120.00205 * 300.00139 * 4 2 1 7 7 N 1.31519 * 120.00253 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99923 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47121 * 89.99962 * 8 6 4 10 10 H 1.48498 * 109.47544 * 209.99881 * 8 6 4 11 11 H 1.48500 * 109.47213 * 330.00152 * 8 6 4 12 12 N 1.46499 * 109.46987 * 240.00206 * 2 1 3 13 13 C 1.34778 * 119.99635 * 85.00103 * 12 2 1 14 14 O 1.21579 * 120.00321 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99502 * 179.97438 * 13 12 2 16 16 C 1.39941 * 119.99792 * 185.31611 * 15 13 12 17 17 C 1.38927 * 120.03947 * 213.31811 * 16 15 13 18 18 C 1.38129 * 120.04322 * 179.97438 * 17 16 15 19 19 C 1.38211 * 120.11851 * 359.74396 * 18 17 16 20 20 C 1.38770 * 120.08651 * 0.51051 * 19 18 17 21 21 O 1.35893 * 120.02353 * 179.76599 * 20 19 18 22 22 C 1.42903 * 117.00038 * 359.72340 * 21 20 19 23 23 C 1.50698 * 109.47359 * 180.02562 * 22 21 20 24 24 N 1.34771 * 120.00147 * 179.72734 * 23 22 21 25 25 O 1.21280 * 119.99695 * 359.97438 * 23 22 21 26 26 C 1.38628 * 119.95320 * 359.48945 * 20 19 18 27 27 H 1.08999 * 109.47317 * 59.99990 * 1 2 3 28 28 H 1.08995 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47302 * 299.99674 * 1 2 3 30 30 H 0.97004 * 119.99752 * 180.02562 * 7 6 4 31 31 H 0.97000 * 120.00125 * 264.99510 * 12 2 1 32 32 H 0.97001 * 120.00135 * 5.31660 * 15 13 12 33 33 H 1.07999 * 119.98376 * 0.02562 * 17 16 15 34 34 H 1.07993 * 119.93941 * 180.02562 * 18 17 16 35 35 H 1.08004 * 119.96104 * 180.25206 * 19 18 17 36 36 H 1.09001 * 109.46913 * 59.99962 * 22 21 20 37 37 H 1.09001 * 109.47219 * 300.00086 * 22 21 20 38 38 H 0.96997 * 120.00348 * 180.26972 * 24 23 22 39 39 H 0.97003 * 120.00048 * 0.27185 * 24 23 22 40 40 H 1.08001 * 120.05636 * 180.22880 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8491 2.1773 1.4924 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8574 1.1614 -2.4118 15 7 2.5967 -0.6533 -3.4575 16 6 2.8362 0.0676 -4.6327 17 6 2.6204 -0.5271 -5.8696 18 6 2.8563 0.1846 -7.0297 19 6 3.3023 1.4911 -6.9633 20 6 3.5246 2.0885 -5.7306 21 8 3.9677 3.3716 -5.6669 22 6 4.1893 4.0438 -6.9083 23 6 4.6755 5.4450 -6.6410 24 7 4.9570 6.2684 -7.6702 25 8 4.8176 5.8301 -5.4998 26 6 3.2890 1.3773 -4.5642 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.9034 -0.5279 4.4375 31 1 2.2491 -1.6317 -1.1527 32 1 2.7543 -1.6101 -3.4347 33 1 2.2672 -1.5462 -5.9242 34 1 2.6876 -0.2792 -7.9903 35 1 3.4821 2.0465 -7.8719 36 1 3.2569 4.0835 -7.4715 37 1 4.9396 3.5032 -7.4853 38 1 5.2736 7.1689 -7.4982 39 1 4.8429 5.9604 -8.5829 40 1 3.4579 1.8418 -3.6040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771659607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:33 Heat of formation + Delta-G solvation = -64.220551 kcal Electronic energy + Delta-G solvation = -24370.470501 eV Core-core repulsion = 20572.307193 eV Total energy + Delta-G solvation = -3798.163308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69486 -39.98733 -39.05244 -37.38392 -35.20776 -34.13906 -34.12503 -32.39329 -30.83752 -30.18041 -28.61646 -28.30671 -25.16788 -23.37475 -22.49404 -21.59706 -20.69970 -19.94845 -18.72766 -18.38967 -17.93233 -16.90199 -16.59635 -16.37647 -16.14595 -15.91874 -15.57371 -15.00346 -14.71040 -14.48056 -14.24629 -13.82741 -13.55822 -13.24969 -13.05466 -12.95039 -12.69764 -12.16755 -11.96370 -11.81870 -11.48421 -11.31861 -11.19931 -10.77398 -10.29549 -10.19123 -10.14524 -10.08929 -9.76859 -9.43913 -9.21007 -8.74738 -8.37242 -8.25715 -7.90415 -6.19102 -4.21781 1.30763 1.43507 2.20429 2.40450 3.03322 3.26753 3.39417 3.45325 3.51763 3.57418 3.94348 4.34615 4.34994 4.57206 4.66860 4.75467 4.79506 4.96907 5.15220 5.16138 5.29175 5.53594 5.85830 6.18959 6.23751 6.31520 6.33557 6.37324 6.41522 6.46090 6.58384 6.78790 6.84153 6.97213 7.06164 7.30242 7.34627 7.46890 7.54440 7.83409 8.27608 8.60303 8.79138 9.07165 9.41844 10.92953 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.003113 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.747470 B = 8991.878887 C =10320.830394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.253 3.747 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.260 1.260 12 N -0.710 5.710 13 C 0.693 3.307 14 O -0.577 6.577 15 N -0.693 5.693 16 C 0.222 3.778 17 C -0.189 4.189 18 C -0.061 4.061 19 C -0.238 4.238 20 C 0.146 3.854 21 O -0.287 6.287 22 C 0.041 3.959 23 C 0.517 3.483 24 N -0.853 5.853 25 O -0.512 6.512 26 C -0.151 4.151 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.268 0.732 31 H 0.393 0.607 32 H 0.407 0.593 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.408 0.592 39 H 0.402 0.598 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 4.282 -28.183 28.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.149 3.851 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.185 1.185 12 N -0.362 5.362 13 C 0.393 3.607 14 O -0.454 6.454 15 N -0.340 5.340 16 C 0.125 3.875 17 C -0.211 4.211 18 C -0.080 4.080 19 C -0.258 4.258 20 C 0.100 3.900 21 O -0.199 6.199 22 C -0.038 4.038 23 C 0.300 3.700 24 N -0.420 5.420 25 O -0.385 6.385 26 C -0.172 4.172 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.226 0.774 32 H 0.242 0.758 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.240 0.760 39 H 0.230 0.770 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.475 5.528 -26.843 27.626 hybrid contribution -0.423 -0.059 -0.404 0.588 sum 3.052 5.470 -27.247 27.957 Atomic orbital electron populations 1.22479 0.99373 1.00823 0.99412 1.19047 0.89981 0.94505 0.81571 0.93162 1.21013 1.33327 1.14493 0.88457 0.90171 1.24812 0.95492 0.96709 0.95469 1.69867 1.44864 1.40152 0.98050 0.86882 0.80450 0.83631 0.77602 1.20301 1.22113 1.18494 1.45472 1.68634 1.13683 1.08377 1.16143 0.78619 0.85503 0.80431 1.90926 1.56284 1.14182 1.84024 1.42825 1.69794 1.11527 1.09892 1.17139 0.93969 0.91191 0.85211 1.20773 1.07860 1.01592 0.90834 1.20591 0.96534 0.93175 0.97698 1.21067 1.11123 0.97633 0.95938 1.18722 0.94492 0.83037 0.93755 1.86193 1.81080 1.23534 1.29133 1.22396 1.02468 0.91472 0.87477 1.20132 0.77546 0.86871 0.85459 1.43650 1.71512 1.17723 1.09116 1.90853 1.50117 1.76130 1.21388 1.20425 1.04240 0.94180 0.98382 0.94448 0.92855 0.93378 0.92258 0.77366 0.75778 0.85614 0.85569 0.85833 0.88856 0.88865 0.76032 0.76985 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 8.96 37.16 0.33 -3.37 16 2 C 0.25 6.13 2.15 -69.09 -0.15 5.98 16 3 H 0.05 1.36 6.63 -51.93 -0.34 1.01 16 4 C -0.53 -14.57 9.31 -34.44 -0.32 -14.89 16 5 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 6 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 7 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 8 Si 0.88 22.17 24.37 -169.99 -4.14 18.03 16 9 H -0.28 -6.67 6.87 56.52 0.39 -6.29 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 12 N -0.71 -14.21 5.07 -59.82 -0.30 -14.51 16 13 C 0.69 13.60 8.27 -86.92 -0.72 12.88 16 14 O -0.58 -13.64 13.69 5.30 0.07 -13.57 16 15 N -0.69 -10.25 5.35 -14.24 -0.08 -10.33 16 16 C 0.22 3.26 6.28 -83.71 -0.53 2.74 16 17 C -0.19 -2.13 9.96 -39.37 -0.39 -2.52 16 18 C -0.06 -0.59 10.03 -39.63 -0.40 -0.99 16 19 C -0.24 -2.47 9.04 -39.39 -0.36 -2.82 16 20 C 0.15 2.06 6.68 -39.24 -0.26 1.80 16 21 O -0.29 -4.17 9.67 -39.31 -0.38 -4.55 16 22 C 0.04 0.35 5.22 36.00 0.19 0.54 16 23 C 0.52 5.21 8.18 -10.99 -0.09 5.12 16 24 N -0.85 -3.99 8.87 31.22 0.28 -3.72 16 25 O -0.51 -8.31 17.34 -14.35 -0.25 -8.56 16 26 C -0.15 -2.53 8.59 -39.25 -0.34 -2.87 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.39 6.72 8.56 -40.82 -0.35 6.37 16 32 H 0.41 4.46 8.83 -40.82 -0.36 4.10 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.84 6.29 -52.48 -0.33 0.51 16 36 H 0.09 0.55 7.65 -51.93 -0.40 0.15 16 37 H 0.09 0.51 7.67 -51.93 -0.40 0.11 16 38 H 0.41 1.65 8.93 -40.82 -0.36 1.29 16 39 H 0.40 0.34 8.83 -40.82 -0.36 -0.02 16 40 H 0.15 3.00 6.41 -52.49 -0.34 2.67 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -38.52 338.71 -6.75 -45.28 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -4.70 Total: 8.98 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -3.12 Total: 3.72 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.67 Total: -54.44 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.56 Total: -26.68 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.52 -6.75 -45.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771659607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.945 kcal (2) G-P(sol) polarization free energy of solvation -38.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds