Wall clock time and date at job start Tue Mar 31 2020 09:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 C 1.50706 * 109.47076 * 120.00194 * 2 1 3 5 5 C 1.37468 * 123.35307 * 305.12993 * 4 2 1 6 6 C 1.33813 * 115.10091 * 180.27204 * 5 4 2 7 7 S 1.70610 * 110.95788 * 359.74560 * 6 5 4 8 8 C 1.36647 * 123.34712 * 124.92796 * 4 2 1 9 9 C 1.46575 * 125.46313 * 0.02562 * 8 4 2 10 10 O 1.21702 * 120.00466 * 275.00217 * 9 8 4 11 11 N 1.34778 * 119.99736 * 95.00321 * 9 8 4 12 12 C 1.46923 * 120.63552 * 354.92294 * 11 9 8 13 13 C 1.53188 * 108.77935 * 126.38689 * 12 11 9 14 14 C 1.53040 * 109.31184 * 54.63665 * 13 12 11 15 15 C 1.53037 * 109.53980 * 298.63427 * 14 13 12 16 16 H 1.08994 * 109.49765 * 301.38261 * 15 14 13 17 17 C 1.50703 * 109.49913 * 181.31433 * 15 14 13 18 18 H 1.07994 * 119.99928 * 0.07178 * 17 15 14 19 19 C 1.37872 * 119.99761 * 179.78594 * 17 15 14 20 20 N 1.31517 * 120.00282 * 0.28222 * 19 17 15 21 21 Si 1.86803 * 119.99672 * 180.27447 * 19 17 15 22 22 H 1.48504 * 109.46813 * 90.00581 * 21 19 17 23 23 H 1.48504 * 109.46985 * 210.00261 * 21 19 17 24 24 H 1.48494 * 109.47217 * 330.00459 * 21 19 17 25 25 C 1.46940 * 120.60344 * 174.89454 * 11 9 8 26 26 H 1.09001 * 109.46881 * 59.99986 * 1 2 3 27 27 H 1.09003 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47134 * 299.99887 * 1 2 3 29 29 H 1.09002 * 109.46991 * 240.00005 * 2 1 3 30 30 H 1.08999 * 109.46889 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46878 * 300.00204 * 3 2 1 32 32 H 1.09005 * 109.46484 * 60.00378 * 3 2 1 33 33 H 1.08005 * 122.44594 * 359.97438 * 5 4 2 34 34 H 1.07999 * 124.52104 * 179.76687 * 6 5 4 35 35 H 1.09006 * 109.58444 * 6.59711 * 12 11 9 36 36 H 1.09001 * 109.58558 * 246.18033 * 12 11 9 37 37 H 1.09000 * 109.49917 * 294.68690 * 13 12 11 38 38 H 1.09002 * 109.49887 * 174.58813 * 13 12 11 39 39 H 1.08999 * 109.45885 * 178.61373 * 14 13 12 40 40 H 1.08998 * 109.44563 * 58.65072 * 14 13 12 41 41 H 0.97002 * 119.99884 * 179.97438 * 20 19 17 42 42 H 1.09007 * 109.55917 * 113.80795 * 25 11 9 43 43 H 1.09004 * 109.61429 * 353.38458 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.6613 -0.3636 2.5079 6 6 2.2114 -1.1019 3.4790 7 16 3.2384 -2.2987 2.8283 8 6 2.8989 -1.7661 1.1872 9 6 3.4604 -2.3560 -0.0315 10 8 2.8356 -3.2041 -0.6409 11 7 4.6689 -1.9591 -0.4772 12 6 5.3861 -0.8595 0.1825 13 6 6.7899 -1.3427 0.5599 14 6 7.4888 -1.8905 -0.6865 15 6 6.6991 -3.0814 -1.2344 16 1 6.6248 -3.8524 -0.4676 17 6 7.4053 -3.6402 -2.4428 18 1 8.3261 -3.1918 -2.7854 19 6 6.8789 -4.7275 -3.1073 20 7 5.7576 -5.2736 -2.6900 21 14 7.7583 -5.4248 -4.6006 22 1 8.7195 -6.4699 -4.1656 23 1 6.7631 -6.0223 -5.5269 24 1 8.4914 -4.3368 -5.2962 25 6 5.2939 -2.6187 -1.6320 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9562 0.8901 33 1 0.9796 0.4486 2.7129 34 1 2.0292 -0.9594 4.5339 35 1 4.8484 -0.5604 1.0823 36 1 5.4622 -0.0121 -0.4988 37 1 6.7143 -2.1299 1.3101 38 1 7.3654 -0.5094 0.9631 39 1 8.4970 -2.2123 -0.4257 40 1 7.5418 -1.1098 -1.4454 41 1 5.3871 -6.0383 -3.1578 42 1 5.3620 -1.9148 -2.4615 43 1 4.6959 -3.4802 -1.9292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:35 Heat of formation + Delta-G solvation = -22.872391 kcal Electronic energy + Delta-G solvation = -23987.804060 eV Core-core repulsion = 20737.726957 eV Total energy + Delta-G solvation = -3250.077103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.79846 -38.26244 -36.57625 -34.07379 -33.37467 -31.78612 -30.11997 -29.26395 -27.14857 -25.39827 -24.98276 -23.77678 -21.84947 -21.80704 -20.65041 -18.93712 -17.77396 -17.27165 -16.46893 -16.05325 -15.71407 -14.68022 -14.51061 -14.28247 -14.02401 -13.70953 -13.61838 -13.52167 -13.20939 -12.78664 -12.59392 -12.54837 -12.44048 -12.11268 -11.90902 -11.83362 -11.41008 -11.16274 -10.99318 -10.92093 -10.76531 -10.58104 -10.49731 -10.38994 -10.24103 -9.91157 -9.48786 -9.14827 -8.94911 -8.55891 -8.43467 -8.37031 -7.77589 -6.00673 -4.09441 0.88684 1.48470 2.04657 2.62817 3.30581 3.35320 3.38310 3.40458 3.76921 4.42604 4.76916 4.85846 4.98184 5.16602 5.19509 5.29624 5.36369 5.44377 5.52014 5.56734 5.59693 5.68680 5.70306 5.79100 5.96082 6.01864 6.07817 6.13332 6.18798 6.25405 6.31242 6.43519 6.51156 6.60114 6.66326 6.84951 6.96134 7.13533 7.24807 7.62178 7.85159 7.97893 8.20546 8.37014 8.78418 8.95029 9.56430 11.04875 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.004350 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.434493 B = 6434.511447 C = 6698.069983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C -0.140 4.140 4 C -0.062 4.062 5 C -0.130 4.130 6 C -0.259 4.259 7 S 0.213 5.787 8 C -0.230 4.230 9 C 0.578 3.422 10 O -0.524 6.524 11 N -0.593 5.593 12 C 0.110 3.890 13 C -0.134 4.134 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.113 3.887 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.264 0.736 42 H 0.044 0.956 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.904 13.021 11.340 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.197 4.197 4 C -0.075 4.075 5 C -0.161 4.161 6 C -0.396 4.396 7 S 0.481 5.519 8 C -0.351 4.351 9 C 0.362 3.638 10 O -0.401 6.401 11 N -0.325 5.325 12 C -0.014 4.014 13 C -0.172 4.172 14 C -0.148 4.148 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.559 4.559 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.519 5.519 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.007 4.007 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.155 0.845 34 H 0.181 0.819 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.446 11.253 11.630 17.420 hybrid contribution -0.461 0.761 -1.178 1.477 sum -6.907 12.015 10.451 17.358 Atomic orbital electron populations 1.21793 0.94136 1.02232 1.01551 1.19854 0.95992 0.95617 0.94655 1.21805 1.01393 0.94831 1.01684 1.19224 0.97193 0.95334 0.95746 1.19684 1.03185 1.02330 0.90949 1.25133 1.06861 1.03442 1.04176 1.83291 1.42098 1.31318 0.95173 1.24680 1.07856 1.04025 0.98507 1.17042 0.81645 0.82121 0.82943 1.90854 1.59374 1.32075 1.57776 1.48473 1.16896 1.34400 1.32722 1.21647 0.93343 0.89444 0.96971 1.21954 0.95249 1.00346 0.99641 1.21628 0.98883 0.99296 0.95009 1.18975 0.90417 0.92016 0.96486 0.95315 1.21069 1.08647 1.13826 1.12385 0.92301 1.25053 0.94948 0.96508 0.97481 1.69881 1.18955 1.22856 1.40165 0.86588 0.79382 0.79267 0.82743 1.20673 1.21173 1.19885 1.22369 0.97214 0.97396 0.83700 0.92323 0.92321 0.92642 0.90190 0.92442 0.92280 0.92581 0.84469 0.81897 0.91162 0.91947 0.92109 0.92144 0.92936 0.93127 0.92600 0.93739 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.99 37.16 0.33 -1.23 16 2 C -0.04 -0.53 3.12 -91.77 -0.29 -0.82 16 3 C -0.14 -1.47 9.09 37.16 0.34 -1.13 16 4 C -0.06 -0.86 4.72 -105.47 -0.50 -1.36 16 5 C -0.13 -1.50 9.17 -41.42 -0.38 -1.88 16 6 C -0.26 -2.87 10.92 29.18 0.32 -2.55 16 7 S 0.21 2.92 23.05 -107.50 -2.48 0.44 16 8 C -0.23 -3.84 4.14 -36.80 -0.15 -3.99 16 9 C 0.58 12.16 6.42 -12.90 -0.08 12.07 16 10 O -0.52 -13.32 16.54 5.19 0.09 -13.24 16 11 N -0.59 -12.12 2.97 -174.33 -0.52 -12.64 16 12 C 0.11 1.79 6.35 -3.71 -0.02 1.76 16 13 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 14 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 15 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -14.01 8.56 -34.44 -0.29 -14.31 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 20 N -0.88 -25.68 11.40 55.43 0.63 -25.05 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.11 2.74 5.39 -3.70 -0.02 2.72 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.52 7.51 -51.93 -0.39 0.13 16 29 H 0.08 1.28 7.13 -51.93 -0.37 0.90 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.51 8.00 -51.93 -0.42 0.09 16 33 H 0.14 1.27 7.68 -52.48 -0.40 0.86 16 34 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.07 1.02 6.30 -51.93 -0.33 0.70 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.04 1.07 8.14 -51.92 -0.42 0.65 16 43 H 0.12 3.48 5.16 -51.93 -0.27 3.21 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -30.91 355.90 -10.07 -40.98 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.79 Total: 0.90 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -1.35 Total: -12.94 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.11 Total: -37.69 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.48 Total: 0.44 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.91 -10.07 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.105 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds