Wall clock time and date at job start Tue Mar 31 2020 09:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 C 1.50706 * 109.47076 * 120.00194 * 2 1 3 5 5 C 1.37468 * 123.35307 * 305.12993 * 4 2 1 6 6 C 1.33813 * 115.10091 * 180.27204 * 5 4 2 7 7 S 1.70610 * 110.95788 * 359.74560 * 6 5 4 8 8 C 1.36647 * 123.34712 * 124.92796 * 4 2 1 9 9 C 1.46575 * 125.46313 * 0.02562 * 8 4 2 10 10 O 1.21702 * 120.00466 * 275.00217 * 9 8 4 11 11 N 1.34778 * 119.99736 * 95.00321 * 9 8 4 12 12 C 1.46923 * 120.63552 * 354.92294 * 11 9 8 13 13 C 1.53188 * 108.77935 * 126.38689 * 12 11 9 14 14 C 1.53040 * 109.31184 * 54.63665 * 13 12 11 15 15 C 1.53037 * 109.53980 * 298.63427 * 14 13 12 16 16 H 1.08994 * 109.49765 * 301.38261 * 15 14 13 17 17 C 1.50703 * 109.49913 * 181.31433 * 15 14 13 18 18 H 1.07994 * 119.99928 * 0.07178 * 17 15 14 19 19 C 1.37872 * 119.99761 * 179.78594 * 17 15 14 20 20 N 1.31517 * 120.00282 * 0.28222 * 19 17 15 21 21 Si 1.86803 * 119.99672 * 180.27447 * 19 17 15 22 22 H 1.48504 * 109.46813 * 90.00581 * 21 19 17 23 23 H 1.48504 * 109.46985 * 210.00261 * 21 19 17 24 24 H 1.48494 * 109.47217 * 330.00459 * 21 19 17 25 25 C 1.46940 * 120.60344 * 174.89454 * 11 9 8 26 26 H 1.09001 * 109.46881 * 59.99986 * 1 2 3 27 27 H 1.09003 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47134 * 299.99887 * 1 2 3 29 29 H 1.09002 * 109.46991 * 240.00005 * 2 1 3 30 30 H 1.08999 * 109.46889 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46878 * 300.00204 * 3 2 1 32 32 H 1.09005 * 109.46484 * 60.00378 * 3 2 1 33 33 H 1.08005 * 122.44594 * 359.97438 * 5 4 2 34 34 H 1.07999 * 124.52104 * 179.76687 * 6 5 4 35 35 H 1.09006 * 109.58444 * 6.59711 * 12 11 9 36 36 H 1.09001 * 109.58558 * 246.18033 * 12 11 9 37 37 H 1.09000 * 109.49917 * 294.68690 * 13 12 11 38 38 H 1.09002 * 109.49887 * 174.58813 * 13 12 11 39 39 H 1.08999 * 109.45885 * 178.61373 * 14 13 12 40 40 H 1.08998 * 109.44563 * 58.65072 * 14 13 12 41 41 H 0.97002 * 119.99884 * 179.97438 * 20 19 17 42 42 H 1.09007 * 109.55917 * 113.80795 * 25 11 9 43 43 H 1.09004 * 109.61429 * 353.38458 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.6613 -0.3636 2.5079 6 6 2.2114 -1.1019 3.4790 7 16 3.2384 -2.2987 2.8283 8 6 2.8989 -1.7661 1.1872 9 6 3.4604 -2.3560 -0.0315 10 8 2.8356 -3.2041 -0.6409 11 7 4.6689 -1.9591 -0.4772 12 6 5.3861 -0.8595 0.1825 13 6 6.7899 -1.3427 0.5599 14 6 7.4888 -1.8905 -0.6865 15 6 6.6991 -3.0814 -1.2344 16 1 6.6248 -3.8524 -0.4676 17 6 7.4053 -3.6402 -2.4428 18 1 8.3261 -3.1918 -2.7854 19 6 6.8789 -4.7275 -3.1073 20 7 5.7576 -5.2736 -2.6900 21 14 7.7583 -5.4248 -4.6006 22 1 8.7195 -6.4699 -4.1656 23 1 6.7631 -6.0223 -5.5269 24 1 8.4914 -4.3368 -5.2962 25 6 5.2939 -2.6187 -1.6320 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9562 0.8901 33 1 0.9796 0.4486 2.7129 34 1 2.0292 -0.9594 4.5339 35 1 4.8484 -0.5604 1.0823 36 1 5.4622 -0.0121 -0.4988 37 1 6.7143 -2.1299 1.3101 38 1 7.3654 -0.5094 0.9631 39 1 8.4970 -2.2123 -0.4257 40 1 7.5418 -1.1098 -1.4454 41 1 5.3871 -6.0383 -3.1578 42 1 5.3620 -1.9148 -2.4615 43 1 4.6959 -3.4802 -1.9292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:34 Heat of formation + Delta-G solvation = -40.268585 kcal Electronic energy + Delta-G solvation = -23988.558415 eV Core-core repulsion = 20737.726957 eV Total energy + Delta-G solvation = -3250.831459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.27609 -39.48864 -38.27103 -35.32363 -35.00717 -33.51833 -31.77468 -30.59726 -27.99585 -27.16682 -26.55962 -25.10069 -23.49173 -22.78221 -22.12676 -20.53986 -19.18258 -18.49847 -18.21559 -17.57892 -17.15779 -16.54390 -16.00766 -15.68488 -15.22428 -15.06914 -14.85243 -14.66333 -14.48718 -14.37682 -14.24134 -13.93662 -13.53211 -13.44700 -13.20818 -12.94091 -12.89791 -12.72215 -12.34705 -12.30970 -12.25982 -12.05531 -11.86718 -11.73901 -11.67998 -11.60036 -11.25756 -10.99567 -10.82257 -10.54751 -9.65820 -9.50282 -9.40490 -8.13142 -6.30435 -0.17265 0.32828 1.05966 1.39631 1.40746 1.51614 1.64992 1.81191 2.20944 2.41500 3.15726 3.59072 3.84204 3.93318 4.01418 4.12370 4.25651 4.28918 4.32837 4.50206 4.53612 4.62331 4.69995 4.76235 4.79750 4.81535 4.82275 4.97571 5.05510 5.06801 5.14921 5.21075 5.23908 5.24492 5.32344 5.39216 5.46864 5.50803 5.53701 5.59158 5.85296 5.95280 6.29616 6.54151 6.82375 7.16849 7.40275 8.90758 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.004350 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.434493 B = 6434.511447 C = 6698.069983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 C -0.133 4.133 4 C -0.041 4.041 5 C -0.136 4.136 6 C -0.224 4.224 7 S 0.199 5.801 8 C -0.283 4.283 9 C 0.578 3.422 10 O -0.589 6.589 11 N -0.595 5.595 12 C 0.108 3.892 13 C -0.125 4.125 14 C -0.104 4.104 15 C 0.039 3.961 16 H -0.014 1.014 17 C -0.534 4.534 18 H 0.065 0.935 19 C 0.009 3.991 20 N -0.918 5.918 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.260 1.260 25 C 0.126 3.874 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.174 0.826 34 H 0.204 0.796 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.106 0.894 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.260 0.740 42 H 0.038 0.962 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 16.448 13.623 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 C -0.190 4.190 4 C -0.056 4.056 5 C -0.167 4.167 6 C -0.360 4.360 7 S 0.467 5.533 8 C -0.403 4.403 9 C 0.365 3.635 10 O -0.470 6.470 11 N -0.326 5.326 12 C -0.014 4.014 13 C -0.163 4.163 14 C -0.142 4.142 15 C 0.020 3.980 16 H 0.005 0.995 17 C -0.573 4.573 18 H 0.083 0.917 19 C -0.190 4.190 20 N -0.557 5.557 21 Si 0.784 3.216 22 H -0.200 1.200 23 H -0.215 1.215 24 H -0.184 1.184 25 C 0.004 3.996 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.192 0.808 34 H 0.221 0.779 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.124 0.876 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.380 14.724 13.941 21.257 hybrid contribution -0.523 -0.273 -1.832 1.924 sum -6.903 14.451 12.109 20.078 Atomic orbital electron populations 1.21777 0.92538 1.01408 1.03552 1.19932 0.97330 0.96871 0.92636 1.21773 1.00945 0.92883 1.03444 1.19571 0.94955 0.93694 0.97363 1.19930 1.03900 1.03510 0.89325 1.25587 1.03902 1.00631 1.05921 1.83339 1.43514 1.32897 0.93540 1.24230 1.11359 1.06779 0.97883 1.17665 0.81069 0.81013 0.83773 1.90795 1.61084 1.35032 1.60114 1.48476 1.17223 1.35044 1.31852 1.21932 0.93141 0.88312 0.98014 1.21920 0.95257 1.01537 0.97626 1.21515 0.98549 0.97359 0.96763 1.18904 0.91249 0.93020 0.94808 0.99541 1.21514 1.08844 1.13911 1.13019 0.91700 1.25919 0.95512 0.97078 1.00497 1.70094 1.20691 1.23265 1.41631 0.85537 0.78150 0.78799 0.79093 1.19997 1.21474 1.18425 1.21788 0.96663 0.95902 0.85207 0.91221 0.94550 0.89745 0.94554 0.93131 0.91382 0.89959 0.80832 0.77925 0.88742 0.90224 0.93011 0.87558 0.92532 0.92279 0.93140 0.94341 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.99 71.98 0.65 -2.15 16 2 C -0.05 -1.18 3.12 -11.54 -0.04 -1.22 16 3 C -0.13 -2.43 9.09 71.98 0.65 -1.78 16 4 C -0.04 -1.09 4.72 -20.42 -0.10 -1.18 16 5 C -0.14 -2.56 9.17 21.08 0.19 -2.37 16 6 C -0.22 -3.97 10.92 66.81 0.73 -3.24 16 7 S 0.20 5.21 23.05 -56.49 -1.30 3.91 16 8 C -0.28 -9.51 4.14 24.07 0.10 -9.41 16 9 C 0.58 25.89 6.42 86.42 0.55 26.45 16 10 O -0.59 -32.87 16.54 -4.35 -0.07 -32.95 16 11 N -0.60 -25.54 2.97 -823.68 -2.45 -27.99 16 12 C 0.11 3.40 6.35 86.36 0.55 3.95 16 13 C -0.13 -3.87 6.08 30.67 0.19 -3.68 16 14 C -0.10 -4.07 5.11 30.62 0.16 -3.92 16 15 C 0.04 2.03 2.25 -11.46 -0.03 2.00 16 16 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 17 C -0.53 -29.76 8.56 25.60 0.22 -29.54 16 18 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 19 C 0.01 0.52 5.31 84.65 0.45 0.97 16 20 N -0.92 -57.02 11.40 21.45 0.24 -56.78 16 21 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 25 C 0.13 6.56 5.39 86.36 0.47 7.02 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 1.25 7.51 -2.39 -0.02 1.23 16 29 H 0.04 1.22 7.13 -2.39 -0.02 1.20 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.09 8.00 -2.38 -0.02 1.07 16 33 H 0.17 2.07 7.68 -2.91 -0.02 2.05 16 34 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.09 2.57 6.30 -2.38 -0.02 2.55 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.08 4.68 5.16 -2.39 -0.01 4.67 16 Total: -1.00 -75.66 355.90 4.18 -71.48 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.99 Total: 13.59 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 4.75 Total: -18.08 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -2.20 Total: -84.77 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.07 Total: -32.95 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -1.30 Total: 3.91 kcal Total: -75.66 4.18 -71.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.207 kcal (2) G-P(sol) polarization free energy of solvation -75.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds