Wall clock time and date at job start Tue Mar 31 2020 09:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46917 * 2 1 4 4 C 1.50697 * 109.47021 * 240.00117 * 2 1 3 5 5 C 1.37478 * 123.35180 * 56.89651 * 4 2 1 6 6 C 1.33815 * 115.09948 * 179.83220 * 5 4 2 7 7 S 1.70613 * 110.95627 * 0.41988 * 6 5 4 8 8 C 1.36643 * 123.35255 * 237.18480 * 4 2 1 9 9 C 1.46591 * 125.45995 * 359.97438 * 8 4 2 10 10 O 1.21699 * 120.00200 * 91.82347 * 9 8 4 11 11 N 1.34770 * 119.99644 * 271.82829 * 9 8 4 12 12 C 1.46922 * 120.63493 * 4.42232 * 11 9 8 13 13 C 1.53200 * 108.77566 * 233.58578 * 12 11 9 14 14 C 1.53037 * 109.30785 * 305.36271 * 13 12 11 15 15 C 1.53041 * 109.54046 * 61.36545 * 14 13 12 16 16 H 1.09000 * 109.49719 * 58.61957 * 15 14 13 17 17 C 1.50702 * 109.49725 * 178.67932 * 15 14 13 18 18 H 1.08007 * 119.99870 * 0.02562 * 17 15 14 19 19 C 1.37869 * 120.00002 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00274 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 120.00230 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46926 * 59.99636 * 21 19 17 23 23 H 1.48497 * 109.47341 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46887 * 300.00026 * 21 19 17 25 25 C 1.46928 * 120.62756 * 184.13659 * 11 9 8 26 26 H 1.09004 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47282 * 59.99646 * 1 2 3 28 28 H 1.08997 * 109.47243 * 299.99593 * 1 2 3 29 29 H 1.08999 * 109.47282 * 120.00354 * 2 1 3 30 30 H 1.08997 * 109.46832 * 60.00155 * 3 2 1 31 31 H 1.08997 * 109.46924 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47434 * 300.00261 * 3 2 1 33 33 H 1.07996 * 122.44856 * 0.02562 * 5 4 2 34 34 H 1.08001 * 124.52482 * 180.18481 * 6 5 4 35 35 H 1.09001 * 109.58951 * 353.36820 * 12 11 9 36 36 H 1.09002 * 109.59209 * 113.65388 * 12 11 9 37 37 H 1.08994 * 109.49842 * 65.31197 * 13 12 11 38 38 H 1.08994 * 109.49833 * 185.41091 * 13 12 11 39 39 H 1.09004 * 109.45544 * 181.38677 * 14 13 12 40 40 H 1.09003 * 109.46160 * 301.33820 * 14 13 12 41 41 H 0.97001 * 120.00375 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.59213 * 246.20083 * 25 11 9 43 43 H 1.09002 * 109.58928 * 6.62994 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.3381 -2.5096 6 6 2.2360 -1.0820 -3.4803 7 16 3.2117 -2.3198 -2.8270 8 6 2.8659 -1.7922 -1.1857 9 6 3.3881 -2.4135 0.0350 10 8 2.7868 -3.3358 0.5536 11 7 4.5340 -1.9632 0.5831 12 6 5.2201 -0.7898 0.0255 13 6 6.6758 -1.1643 -0.2708 14 6 7.3219 -1.7263 0.9976 15 6 6.5773 -2.9900 1.4345 16 1 6.6076 -3.7262 0.6313 17 6 7.2342 -3.5607 2.6649 18 1 8.0964 -3.0711 3.0931 19 6 6.7338 -4.7073 3.2445 20 7 5.6836 -5.3032 2.7234 21 14 7.5476 -5.4144 4.7701 22 1 7.5047 -4.4112 5.8641 23 1 6.8241 -6.6399 5.1942 24 1 8.9607 -5.7539 4.4650 25 6 5.1176 -2.6327 1.7535 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.0384 0.4958 -2.7160 34 1 2.0750 -0.9228 -4.5363 35 1 4.7271 -0.4821 -0.8967 36 1 5.1903 0.0277 0.7459 37 1 6.7046 -1.9174 -1.0581 38 1 7.2209 -0.2777 -0.5946 39 1 8.3649 -1.9707 0.7960 40 1 7.2706 -0.9816 1.7919 41 1 5.3314 -6.1096 3.1314 42 1 5.0819 -1.9634 2.6130 43 1 4.5569 -3.5416 1.9719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:39 Heat of formation + Delta-G solvation = -22.817587 kcal Electronic energy + Delta-G solvation = -24021.829154 eV Core-core repulsion = 20771.754427 eV Total energy + Delta-G solvation = -3250.074726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.81313 -38.24163 -36.57725 -34.07625 -33.36385 -31.78639 -30.10822 -29.25840 -27.15586 -25.38135 -24.97851 -23.77990 -21.84311 -21.81975 -20.63934 -18.95135 -17.79459 -17.23368 -16.48523 -16.06110 -15.69257 -14.67765 -14.51725 -14.29469 -14.01355 -13.71341 -13.60148 -13.52342 -13.21103 -12.78499 -12.58402 -12.54116 -12.44292 -12.11568 -11.90876 -11.82907 -11.41055 -11.17264 -10.98482 -10.90476 -10.77262 -10.57985 -10.52599 -10.39056 -10.23891 -9.90485 -9.49050 -9.14432 -8.95217 -8.55541 -8.43415 -8.37039 -7.77195 -6.00137 -4.08983 0.89069 1.48532 2.05110 2.62742 3.31872 3.35179 3.38269 3.39361 3.77548 4.42860 4.76560 4.85510 4.97791 5.16364 5.18831 5.29927 5.36688 5.44411 5.52395 5.56112 5.59196 5.68415 5.70520 5.78689 5.95466 6.02282 6.07133 6.13209 6.19109 6.24909 6.31395 6.43431 6.50483 6.59971 6.66368 6.84891 6.96143 7.13652 7.24732 7.61862 7.85104 7.98010 8.20579 8.37275 8.78673 8.95091 9.56743 11.05388 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.004333 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.960854 B = 6460.125252 C = 6610.455716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.040 4.040 3 C -0.140 4.140 4 C -0.063 4.063 5 C -0.129 4.129 6 C -0.260 4.260 7 S 0.215 5.785 8 C -0.229 4.229 9 C 0.578 3.422 10 O -0.524 6.524 11 N -0.592 5.592 12 C 0.110 3.890 13 C -0.133 4.133 14 C -0.111 4.111 15 C 0.041 3.959 16 H 0.029 0.971 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.113 3.887 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.137 0.863 34 H 0.163 0.837 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.264 0.736 42 H 0.044 0.956 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.831 13.245 -11.185 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.077 4.077 5 C -0.161 4.161 6 C -0.397 4.397 7 S 0.484 5.516 8 C -0.350 4.350 9 C 0.362 3.638 10 O -0.402 6.402 11 N -0.324 5.324 12 C -0.014 4.014 13 C -0.172 4.172 14 C -0.148 4.148 15 C 0.022 3.978 16 H 0.047 0.953 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.007 4.007 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.155 0.845 34 H 0.181 0.819 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.384 11.396 -11.542 17.431 hybrid contribution -0.469 0.809 1.217 1.535 sum -6.853 12.205 -10.326 17.394 Atomic orbital electron populations 1.21794 0.94136 1.02231 1.01574 1.19848 0.95974 0.95659 0.94599 1.21811 1.01429 0.94811 1.01700 1.19227 0.97751 0.94975 0.95740 1.19677 1.03255 1.02263 0.90930 1.25136 1.07281 1.03100 1.04173 1.83282 1.44376 1.28949 0.95008 1.24682 1.08423 1.03336 0.98592 1.17046 0.81281 0.82925 0.82540 1.90855 1.57856 1.28771 1.62680 1.48461 1.22203 1.29684 1.32045 1.21647 0.93459 0.88022 0.98235 1.21950 0.94914 1.00434 0.99868 1.21632 0.99131 0.99220 0.94841 1.19043 0.90173 0.91623 0.96960 0.95265 1.21037 1.13902 1.09537 1.11544 0.92369 1.25048 0.94937 0.96656 0.97313 1.69871 1.22531 1.19419 1.40024 0.86650 0.79473 0.78516 0.83325 1.20234 1.21251 1.20271 1.22454 0.97499 0.97828 0.82925 0.92343 0.92620 0.92315 0.90266 0.92288 0.92387 0.92565 0.84488 0.81902 0.91132 0.91978 0.92112 0.92170 0.92950 0.93140 0.92543 0.93730 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.01 37.16 0.33 -1.22 16 2 C -0.04 -0.52 3.13 -91.77 -0.29 -0.80 16 3 C -0.14 -1.45 9.07 37.16 0.34 -1.11 16 4 C -0.06 -0.88 4.58 -105.48 -0.48 -1.37 16 5 C -0.13 -1.49 9.13 -41.41 -0.38 -1.87 16 6 C -0.26 -2.88 10.92 29.18 0.32 -2.56 16 7 S 0.22 2.97 23.08 -107.50 -2.48 0.49 16 8 C -0.23 -3.82 4.20 -36.79 -0.15 -3.98 16 9 C 0.58 12.14 6.42 -12.89 -0.08 12.06 16 10 O -0.52 -13.36 16.54 5.19 0.09 -13.28 16 11 N -0.59 -12.08 2.97 -174.07 -0.52 -12.60 16 12 C 0.11 1.79 6.34 -3.71 -0.02 1.76 16 13 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 14 C -0.11 -2.18 5.10 -26.69 -0.14 -2.32 16 15 C 0.04 1.01 2.26 -91.43 -0.21 0.80 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.52 -14.04 8.56 -34.44 -0.29 -14.33 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.88 -25.69 11.41 55.43 0.63 -25.06 16 21 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 C 0.11 2.73 5.42 -3.49 -0.02 2.72 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.52 7.61 -51.93 -0.40 0.13 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.24 7.12 -51.93 -0.37 0.87 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 33 H 0.14 1.26 7.78 -52.49 -0.41 0.85 16 34 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.07 1.03 6.22 -51.93 -0.32 0.70 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.12 3.47 5.17 -51.93 -0.27 3.20 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -30.89 355.91 -10.06 -40.95 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.79 Total: 0.84 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.33 Total: -12.90 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.12 Total: -37.65 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.48 Total: 0.49 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.89 -10.06 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.132 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds