Wall clock time and date at job start Tue Mar 31 2020 09:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46917 * 2 1 4 4 C 1.50697 * 109.47021 * 240.00117 * 2 1 3 5 5 C 1.37478 * 123.35180 * 56.89651 * 4 2 1 6 6 C 1.33815 * 115.09948 * 179.83220 * 5 4 2 7 7 S 1.70613 * 110.95627 * 0.41988 * 6 5 4 8 8 C 1.36643 * 123.35255 * 237.18480 * 4 2 1 9 9 C 1.46591 * 125.45995 * 359.97438 * 8 4 2 10 10 O 1.21699 * 120.00200 * 91.82347 * 9 8 4 11 11 N 1.34770 * 119.99644 * 271.82829 * 9 8 4 12 12 C 1.46922 * 120.63493 * 4.42232 * 11 9 8 13 13 C 1.53200 * 108.77566 * 233.58578 * 12 11 9 14 14 C 1.53037 * 109.30785 * 305.36271 * 13 12 11 15 15 C 1.53041 * 109.54046 * 61.36545 * 14 13 12 16 16 H 1.09000 * 109.49719 * 58.61957 * 15 14 13 17 17 C 1.50702 * 109.49725 * 178.67932 * 15 14 13 18 18 H 1.08007 * 119.99870 * 0.02562 * 17 15 14 19 19 C 1.37869 * 120.00002 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00274 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 120.00230 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46926 * 59.99636 * 21 19 17 23 23 H 1.48497 * 109.47341 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46887 * 300.00026 * 21 19 17 25 25 C 1.46928 * 120.62756 * 184.13659 * 11 9 8 26 26 H 1.09004 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47282 * 59.99646 * 1 2 3 28 28 H 1.08997 * 109.47243 * 299.99593 * 1 2 3 29 29 H 1.08999 * 109.47282 * 120.00354 * 2 1 3 30 30 H 1.08997 * 109.46832 * 60.00155 * 3 2 1 31 31 H 1.08997 * 109.46924 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47434 * 300.00261 * 3 2 1 33 33 H 1.07996 * 122.44856 * 0.02562 * 5 4 2 34 34 H 1.08001 * 124.52482 * 180.18481 * 6 5 4 35 35 H 1.09001 * 109.58951 * 353.36820 * 12 11 9 36 36 H 1.09002 * 109.59209 * 113.65388 * 12 11 9 37 37 H 1.08994 * 109.49842 * 65.31197 * 13 12 11 38 38 H 1.08994 * 109.49833 * 185.41091 * 13 12 11 39 39 H 1.09004 * 109.45544 * 181.38677 * 14 13 12 40 40 H 1.09003 * 109.46160 * 301.33820 * 14 13 12 41 41 H 0.97001 * 120.00375 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.59213 * 246.20083 * 25 11 9 43 43 H 1.09002 * 109.58928 * 6.62994 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.3381 -2.5096 6 6 2.2360 -1.0820 -3.4803 7 16 3.2117 -2.3198 -2.8270 8 6 2.8659 -1.7922 -1.1857 9 6 3.3881 -2.4135 0.0350 10 8 2.7868 -3.3358 0.5536 11 7 4.5340 -1.9632 0.5831 12 6 5.2201 -0.7898 0.0255 13 6 6.6758 -1.1643 -0.2708 14 6 7.3219 -1.7263 0.9976 15 6 6.5773 -2.9900 1.4345 16 1 6.6076 -3.7262 0.6313 17 6 7.2342 -3.5607 2.6649 18 1 8.0964 -3.0711 3.0931 19 6 6.7338 -4.7073 3.2445 20 7 5.6836 -5.3032 2.7234 21 14 7.5476 -5.4144 4.7701 22 1 7.5047 -4.4112 5.8641 23 1 6.8241 -6.6399 5.1942 24 1 8.9607 -5.7539 4.4650 25 6 5.1176 -2.6327 1.7535 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.0384 0.4958 -2.7160 34 1 2.0750 -0.9228 -4.5363 35 1 4.7271 -0.4821 -0.8967 36 1 5.1903 0.0277 0.7459 37 1 6.7046 -1.9174 -1.0581 38 1 7.2209 -0.2777 -0.5946 39 1 8.3649 -1.9707 0.7960 40 1 7.2706 -0.9816 1.7919 41 1 5.3314 -6.1096 3.1314 42 1 5.0819 -1.9634 2.6130 43 1 4.5569 -3.5416 1.9719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:38 Heat of formation + Delta-G solvation = -40.191895 kcal Electronic energy + Delta-G solvation = -24022.582560 eV Core-core repulsion = 20771.754427 eV Total energy + Delta-G solvation = -3250.828133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28444 -39.46516 -38.27658 -35.30924 -35.00393 -33.51779 -31.75782 -30.59545 -27.99225 -27.15086 -26.54827 -25.10145 -23.49199 -22.77992 -22.11665 -20.55140 -19.19541 -18.46878 -18.19931 -17.60738 -17.13854 -16.54735 -16.00013 -15.69705 -15.22328 -15.05314 -14.82267 -14.65439 -14.49184 -14.37509 -14.23194 -13.93892 -13.52145 -13.43384 -13.21682 -12.93196 -12.86692 -12.73424 -12.35350 -12.31408 -12.27855 -12.04174 -11.86555 -11.73307 -11.67362 -11.59331 -11.25720 -10.99250 -10.82877 -10.54252 -9.65097 -9.50062 -9.40782 -8.12632 -6.29986 -0.16703 0.32907 1.06433 1.40185 1.41942 1.50285 1.65679 1.80767 2.21755 2.41766 3.16052 3.59169 3.84461 3.93721 4.01710 4.12800 4.26028 4.29214 4.33190 4.50391 4.53892 4.62695 4.70016 4.75948 4.79972 4.82192 4.82696 4.98576 5.05397 5.07295 5.15661 5.21235 5.23857 5.25014 5.32484 5.40267 5.47076 5.51171 5.54031 5.59229 5.85365 5.95039 6.29786 6.54268 6.82484 7.17129 7.40599 8.91091 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.004333 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.960854 B = 6460.125252 C = 6610.455716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 C -0.134 4.134 4 C -0.041 4.041 5 C -0.136 4.136 6 C -0.224 4.224 7 S 0.197 5.803 8 C -0.282 4.282 9 C 0.577 3.423 10 O -0.590 6.590 11 N -0.594 5.594 12 C 0.109 3.891 13 C -0.125 4.125 14 C -0.104 4.104 15 C 0.040 3.960 16 H -0.013 1.013 17 C -0.536 4.536 18 H 0.065 0.935 19 C 0.010 3.990 20 N -0.918 5.918 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.290 1.290 24 H -0.267 1.267 25 C 0.126 3.874 26 H 0.034 0.966 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.175 0.825 34 H 0.203 0.797 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.106 0.894 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.260 0.740 42 H 0.039 0.961 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 16.869 -13.222 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 C -0.191 4.191 4 C -0.056 4.056 5 C -0.166 4.166 6 C -0.361 4.361 7 S 0.466 5.534 8 C -0.402 4.402 9 C 0.364 3.636 10 O -0.472 6.472 11 N -0.325 5.325 12 C -0.013 4.013 13 C -0.163 4.163 14 C -0.142 4.142 15 C 0.021 3.979 16 H 0.005 0.995 17 C -0.574 4.574 18 H 0.083 0.917 19 C -0.190 4.190 20 N -0.557 5.557 21 Si 0.784 3.216 22 H -0.191 1.191 23 H -0.216 1.216 24 H -0.191 1.191 25 C 0.004 3.996 26 H 0.053 0.947 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.192 0.808 34 H 0.220 0.780 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.124 0.876 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.362 15.069 -13.602 21.273 hybrid contribution -0.516 -0.283 1.793 1.887 sum -6.877 14.786 -11.810 20.134 Atomic orbital electron populations 1.21781 0.92655 1.01344 1.03555 1.19930 0.97212 0.96970 0.92591 1.21784 1.01102 0.92787 1.03439 1.19573 0.95386 0.93292 0.97381 1.19932 1.03893 1.03465 0.89319 1.25583 1.04271 1.00313 1.05923 1.83349 1.45796 1.30732 0.93564 1.24226 1.12188 1.05924 0.97839 1.17669 0.80568 0.81911 0.83406 1.90796 1.59720 1.31785 1.64850 1.48461 1.22446 1.30532 1.31018 1.21928 0.93206 0.86610 0.99573 1.21915 0.94954 1.01838 0.97617 1.21517 0.98840 0.96944 0.96882 1.18971 0.90962 0.93048 0.94924 0.99533 1.21490 1.14001 1.09699 1.12215 0.91716 1.25915 0.95370 0.97249 1.00436 1.70088 1.24216 1.19694 1.41657 0.85599 0.78667 0.77650 0.79704 1.19112 1.21581 1.19148 1.21872 0.97004 0.96189 0.84528 0.94660 0.89798 0.91182 0.94437 0.91385 0.92889 0.90005 0.80812 0.77963 0.88747 0.90198 0.93086 0.87587 0.92578 0.92249 0.93137 0.94269 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.01 71.98 0.65 -2.13 16 2 C -0.05 -1.14 3.13 -11.54 -0.04 -1.17 16 3 C -0.13 -2.35 9.07 71.98 0.65 -1.70 16 4 C -0.04 -1.08 4.58 -20.42 -0.09 -1.18 16 5 C -0.14 -2.53 9.13 21.08 0.19 -2.34 16 6 C -0.22 -4.00 10.92 66.81 0.73 -3.27 16 7 S 0.20 5.23 23.08 -56.49 -1.30 3.92 16 8 C -0.28 -9.46 4.20 24.08 0.10 -9.36 16 9 C 0.58 25.86 6.42 86.42 0.55 26.41 16 10 O -0.59 -32.97 16.54 -4.34 -0.07 -33.04 16 11 N -0.59 -25.43 2.97 -822.87 -2.44 -27.87 16 12 C 0.11 3.42 6.34 86.37 0.55 3.96 16 13 C -0.13 -3.87 6.08 30.67 0.19 -3.68 16 14 C -0.10 -4.07 5.10 30.62 0.16 -3.92 16 15 C 0.04 2.07 2.26 -11.32 -0.03 2.04 16 16 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 17 C -0.54 -29.82 8.56 25.60 0.22 -29.60 16 18 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.01 0.55 5.30 84.65 0.45 1.00 16 20 N -0.92 -57.03 11.41 21.44 0.24 -56.79 16 21 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 C 0.13 6.53 5.42 86.51 0.47 7.00 16 26 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.08 1.24 7.61 -2.39 -0.02 1.22 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 1.23 7.12 -2.39 -0.02 1.21 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.04 7.95 -2.39 -0.02 1.02 16 33 H 0.17 2.04 7.78 -2.91 -0.02 2.02 16 34 H 0.20 2.06 8.06 -2.91 -0.02 2.03 16 35 H 0.09 2.56 6.22 -2.39 -0.01 2.55 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 38 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.07 4.65 5.17 -2.39 -0.01 4.64 16 Total: -1.00 -75.60 355.91 4.19 -71.41 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.99 Total: 13.50 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 4.75 Total: -17.93 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -2.20 Total: -84.66 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.07 Total: -33.04 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.30 Total: 3.92 kcal Total: -75.60 4.19 -71.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.219 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds