Wall clock time and date at job start Tue Mar 31 2020 09:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35760 * 117.00387 * 2 1 4 4 C 1.38933 * 119.91619 * 359.97438 * 3 2 1 5 5 C 1.37735 * 120.11621 * 179.69843 * 4 3 2 6 6 C 1.39718 * 119.95362 * 0.02949 * 5 4 3 7 7 C 1.47601 * 120.08458 * 180.02562 * 6 5 4 8 8 O 1.21584 * 119.99750 * 326.96890 * 7 6 5 9 9 N 1.34775 * 120.00001 * 146.96059 * 7 6 5 10 10 C 1.46917 * 120.63052 * 1.96893 * 9 7 6 11 11 C 1.52761 * 109.01054 * 233.58037 * 10 9 7 12 12 C 1.53039 * 109.38608 * 305.59096 * 11 10 9 13 13 C 1.50700 * 109.45374 * 181.24844 * 12 11 10 14 14 H 1.07995 * 120.00518 * 242.25831 * 13 12 11 15 15 C 1.37878 * 119.99703 * 62.25851 * 13 12 11 16 16 N 1.31517 * 119.99747 * 6.31096 * 15 13 12 17 17 Si 1.86798 * 119.99926 * 186.31563 * 15 13 12 18 18 H 1.48500 * 109.47228 * 94.95140 * 17 15 13 19 19 H 1.48502 * 109.47194 * 214.95162 * 17 15 13 20 20 H 1.48501 * 109.47354 * 334.94940 * 17 15 13 21 21 C 1.53045 * 109.53511 * 61.23689 * 12 11 10 22 22 C 1.46930 * 120.62752 * 182.24803 * 9 7 6 23 23 C 1.39739 * 119.83749 * 359.97438 * 6 5 4 24 24 C 1.37902 * 119.88250 * 359.97438 * 23 6 5 25 25 F 1.35103 * 119.97340 * 180.02562 * 24 23 6 26 26 H 1.08997 * 109.47513 * 300.00586 * 1 2 3 27 27 H 1.08999 * 109.46707 * 60.00470 * 1 2 3 28 28 H 1.08999 * 109.47530 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.93860 * 359.72820 * 4 3 2 30 30 H 1.08000 * 120.02437 * 180.02562 * 5 4 3 31 31 H 1.08994 * 109.58965 * 353.41832 * 10 9 7 32 32 H 1.09003 * 109.58962 * 113.84303 * 10 9 7 33 33 H 1.09001 * 109.56708 * 185.55168 * 11 10 9 34 34 H 1.09003 * 109.35840 * 65.50022 * 11 10 9 35 35 H 1.08997 * 109.45916 * 301.21891 * 12 11 10 36 36 H 0.97001 * 119.99497 * 179.97438 * 16 15 13 37 37 H 1.09008 * 109.49439 * 178.68971 * 21 12 11 38 38 H 1.08992 * 109.50204 * 58.59046 * 21 12 11 39 39 H 1.09005 * 109.58619 * 246.15169 * 22 9 7 40 40 H 1.08996 * 109.59136 * 6.43874 * 22 9 7 41 41 H 1.07994 * 120.05964 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2871 2.3737 -0.0005 5 6 1.9081 3.6031 0.0057 6 6 3.3032 3.6798 0.0120 7 6 3.9718 4.9957 0.0193 8 8 3.4626 5.9395 -0.5537 9 7 5.1466 5.1511 0.6613 10 6 5.7953 4.0104 1.3217 11 6 6.0899 4.3783 2.7748 12 6 6.9028 5.6743 2.8159 13 6 7.2205 6.0223 4.2474 14 1 6.8465 6.9404 4.6757 15 6 7.9887 5.1685 5.0102 16 7 8.5472 4.1144 4.4564 17 14 8.2362 5.5089 6.8301 18 1 7.2362 4.7437 7.6173 19 1 9.6045 5.0927 7.2300 20 1 8.0648 6.9609 7.0899 21 6 6.0914 6.8076 2.1838 22 6 5.7997 6.4660 0.7191 23 6 4.0640 2.5077 0.0125 24 6 3.4352 1.2804 0.0072 25 9 4.1689 0.1460 0.0082 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2087 2.3145 -0.0054 30 1 1.3172 4.5071 0.0057 31 1 5.1324 3.1457 1.2924 32 1 6.7290 3.7749 0.8109 33 1 6.6588 3.5769 3.2462 34 1 5.1505 4.5210 3.3090 35 1 7.8308 5.5386 2.2606 36 1 9.0879 3.5139 4.9930 37 1 6.6616 7.7353 2.2343 38 1 5.1521 6.9274 2.7234 39 1 6.7339 6.4350 0.1582 40 1 5.1407 7.2207 0.2900 41 1 5.1425 2.5629 0.0169 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334271984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:57 Heat of formation + Delta-G solvation = -74.954484 kcal Electronic energy + Delta-G solvation = -25451.874606 eV Core-core repulsion = 21633.325878 eV Total energy + Delta-G solvation = -3818.548728 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.85206 -40.64890 -39.63548 -37.39270 -36.77873 -33.64081 -31.94013 -30.89161 -30.54665 -29.74127 -27.81528 -26.31269 -24.00405 -23.39941 -22.38527 -22.06157 -20.25708 -18.98345 -18.28700 -17.68609 -16.91531 -16.47394 -16.36362 -15.94849 -15.45321 -15.23019 -15.06210 -14.76643 -14.57452 -14.53816 -13.81928 -13.20347 -13.08219 -12.84816 -12.79762 -12.58088 -12.54886 -12.29255 -12.09558 -11.65568 -11.49720 -11.37056 -11.06958 -10.91274 -10.65946 -10.43230 -10.19685 -9.78214 -9.57614 -9.21744 -9.15806 -8.79312 -8.45222 -8.37754 -8.05962 -6.06740 -4.10033 0.71183 0.93214 2.79823 2.81420 3.27289 3.27472 3.35227 3.38157 3.60992 4.01341 4.40160 4.41604 4.51422 4.74369 4.81057 4.90721 4.93866 5.13375 5.20678 5.24697 5.47763 5.56710 5.74448 5.77015 5.86263 5.87407 5.98607 6.09878 6.11273 6.24321 6.30302 6.39936 6.58992 6.82969 6.95850 6.99127 7.06223 7.18838 7.62530 7.80632 7.87037 7.95698 8.37215 8.41219 8.93277 9.54526 11.01060 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.003885 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.371085 B = 7205.257702 C = 8174.823539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.114 3.886 4 C -0.192 4.192 5 C -0.033 4.033 6 C -0.132 4.132 7 C 0.558 3.442 8 O -0.552 6.552 9 N -0.589 5.589 10 C 0.071 3.929 11 C -0.120 4.120 12 C 0.048 3.952 13 C -0.514 4.514 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.123 4.123 22 C 0.112 3.888 23 C -0.094 4.094 24 C 0.062 3.938 25 F -0.128 7.128 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.032 0.968 36 H 0.260 0.740 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.868 -6.852 -9.619 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.067 3.933 4 C -0.211 4.211 5 C -0.052 4.052 6 C -0.136 4.136 7 C 0.346 3.654 8 O -0.432 6.432 9 N -0.320 5.320 10 C -0.050 4.050 11 C -0.159 4.159 12 C 0.029 3.971 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.161 4.161 22 C -0.010 4.010 23 C -0.113 4.113 24 C 0.042 3.958 25 F -0.107 7.107 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.121 0.879 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.872 -6.738 -9.861 18.305 hybrid contribution 0.126 -0.082 1.207 1.216 sum -13.746 -6.821 -8.654 17.617 Atomic orbital electron populations 1.23160 0.77726 1.04393 1.01740 1.86105 1.21924 1.25827 1.88142 1.19230 0.90836 0.85646 0.97620 1.21062 1.00436 0.91028 1.08556 1.21029 0.92910 0.97788 0.93452 1.19709 0.94069 0.93005 1.06771 1.18015 0.80782 0.87379 0.79211 1.90740 1.65310 1.41443 1.45754 1.48124 1.20809 1.11458 1.51613 1.22829 0.97149 0.88218 0.96779 1.21889 0.99932 1.02948 0.91112 1.18647 0.93324 0.89346 0.95779 1.21181 1.31676 1.05930 0.96434 0.92684 1.24954 0.95191 0.95381 0.98310 1.69908 1.32773 1.14588 1.35555 0.86638 0.77392 0.78553 0.85785 1.20761 1.21273 1.19927 1.22015 1.00649 1.00690 0.92786 1.21766 0.96732 0.83492 0.99018 1.21784 1.02260 0.89597 0.97662 1.16759 0.85896 0.82944 1.10152 1.91527 1.76481 1.48336 1.94336 0.92155 0.92253 0.87863 0.83920 0.84000 0.89033 0.91259 0.88715 0.94026 0.95014 0.92971 0.91912 0.92934 0.91866 0.90131 0.81425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.45 10.35 -18.99 -0.20 -3.65 16 3 C 0.11 1.38 6.70 -38.98 -0.26 1.12 16 4 C -0.19 -2.02 9.01 -39.51 -0.36 -2.37 16 5 C -0.03 -0.41 9.59 -39.21 -0.38 -0.78 16 6 C -0.13 -1.93 5.52 -104.96 -0.58 -2.51 16 7 C 0.56 9.70 7.44 -12.44 -0.09 9.60 16 8 O -0.55 -10.84 16.19 5.29 0.09 -10.76 16 9 N -0.59 -10.40 2.98 -174.24 -0.52 -10.92 16 10 C 0.07 1.25 4.88 -3.94 -0.02 1.23 16 11 C -0.12 -2.59 5.16 -26.83 -0.14 -2.73 16 12 C 0.05 1.11 1.98 -91.73 -0.18 0.93 16 13 C -0.51 -13.55 8.53 -34.44 -0.29 -13.84 16 14 H 0.05 1.45 7.75 -52.49 -0.41 1.05 16 15 C 0.06 1.68 5.23 -17.82 -0.09 1.59 16 16 N -0.89 -24.33 11.77 55.43 0.65 -23.68 16 17 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 22 C 0.11 1.99 6.43 -3.71 -0.02 1.97 16 23 C -0.09 -1.30 7.40 -39.14 -0.29 -1.58 16 24 C 0.06 0.85 7.30 -39.36 -0.29 0.57 16 25 F -0.13 -1.87 17.10 2.25 0.04 -1.83 16 26 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.14 1.04 6.27 -52.49 -0.33 0.71 16 30 H 0.14 1.63 7.97 -52.49 -0.42 1.21 16 31 H 0.09 1.43 3.54 -53.51 -0.19 1.25 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 2.27 6.48 -51.93 -0.34 1.94 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.42 7.01 -51.93 -0.36 1.05 16 41 H 0.17 2.21 5.34 -52.49 -0.28 1.93 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -30.25 334.49 -7.28 -37.53 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.21 Total: 0.82 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -2.14 Total: -8.29 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.13 Total: -34.60 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.11 Total: -14.41 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.25 -7.28 -37.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334271984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.425 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds