Wall clock time and date at job start Tue Mar 31 2020 09:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35760 * 117.00387 * 2 1 4 4 C 1.38933 * 119.91619 * 359.97438 * 3 2 1 5 5 C 1.37735 * 120.11621 * 179.69843 * 4 3 2 6 6 C 1.39718 * 119.95362 * 0.02949 * 5 4 3 7 7 C 1.47601 * 120.08458 * 180.02562 * 6 5 4 8 8 O 1.21584 * 119.99750 * 326.96890 * 7 6 5 9 9 N 1.34775 * 120.00001 * 146.96059 * 7 6 5 10 10 C 1.46917 * 120.63052 * 1.96893 * 9 7 6 11 11 C 1.52761 * 109.01054 * 233.58037 * 10 9 7 12 12 C 1.53039 * 109.38608 * 305.59096 * 11 10 9 13 13 C 1.50700 * 109.45374 * 181.24844 * 12 11 10 14 14 H 1.07995 * 120.00518 * 242.25831 * 13 12 11 15 15 C 1.37878 * 119.99703 * 62.25851 * 13 12 11 16 16 N 1.31517 * 119.99747 * 6.31096 * 15 13 12 17 17 Si 1.86798 * 119.99926 * 186.31563 * 15 13 12 18 18 H 1.48500 * 109.47228 * 94.95140 * 17 15 13 19 19 H 1.48502 * 109.47194 * 214.95162 * 17 15 13 20 20 H 1.48501 * 109.47354 * 334.94940 * 17 15 13 21 21 C 1.53045 * 109.53511 * 61.23689 * 12 11 10 22 22 C 1.46930 * 120.62752 * 182.24803 * 9 7 6 23 23 C 1.39739 * 119.83749 * 359.97438 * 6 5 4 24 24 C 1.37902 * 119.88250 * 359.97438 * 23 6 5 25 25 F 1.35103 * 119.97340 * 180.02562 * 24 23 6 26 26 H 1.08997 * 109.47513 * 300.00586 * 1 2 3 27 27 H 1.08999 * 109.46707 * 60.00470 * 1 2 3 28 28 H 1.08999 * 109.47530 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.93860 * 359.72820 * 4 3 2 30 30 H 1.08000 * 120.02437 * 180.02562 * 5 4 3 31 31 H 1.08994 * 109.58965 * 353.41832 * 10 9 7 32 32 H 1.09003 * 109.58962 * 113.84303 * 10 9 7 33 33 H 1.09001 * 109.56708 * 185.55168 * 11 10 9 34 34 H 1.09003 * 109.35840 * 65.50022 * 11 10 9 35 35 H 1.08997 * 109.45916 * 301.21891 * 12 11 10 36 36 H 0.97001 * 119.99497 * 179.97438 * 16 15 13 37 37 H 1.09008 * 109.49439 * 178.68971 * 21 12 11 38 38 H 1.08992 * 109.50204 * 58.59046 * 21 12 11 39 39 H 1.09005 * 109.58619 * 246.15169 * 22 9 7 40 40 H 1.08996 * 109.59136 * 6.43874 * 22 9 7 41 41 H 1.07994 * 120.05964 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2871 2.3737 -0.0005 5 6 1.9081 3.6031 0.0057 6 6 3.3032 3.6798 0.0120 7 6 3.9718 4.9957 0.0193 8 8 3.4626 5.9395 -0.5537 9 7 5.1466 5.1511 0.6613 10 6 5.7953 4.0104 1.3217 11 6 6.0899 4.3783 2.7748 12 6 6.9028 5.6743 2.8159 13 6 7.2205 6.0223 4.2474 14 1 6.8465 6.9404 4.6757 15 6 7.9887 5.1685 5.0102 16 7 8.5472 4.1144 4.4564 17 14 8.2362 5.5089 6.8301 18 1 7.2362 4.7437 7.6173 19 1 9.6045 5.0927 7.2300 20 1 8.0648 6.9609 7.0899 21 6 6.0914 6.8076 2.1838 22 6 5.7997 6.4660 0.7191 23 6 4.0640 2.5077 0.0125 24 6 3.4352 1.2804 0.0072 25 9 4.1689 0.1460 0.0082 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2087 2.3145 -0.0054 30 1 1.3172 4.5071 0.0057 31 1 5.1324 3.1457 1.2924 32 1 6.7290 3.7749 0.8109 33 1 6.6588 3.5769 3.2462 34 1 5.1505 4.5210 3.3090 35 1 7.8308 5.5386 2.2606 36 1 9.0879 3.5139 4.9930 37 1 6.6616 7.7353 2.2343 38 1 5.1521 6.9274 2.7234 39 1 6.7339 6.4350 0.1582 40 1 5.1407 7.2207 0.2900 41 1 5.1425 2.5629 0.0169 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334271984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:56 Heat of formation + Delta-G solvation = -91.997283 kcal Electronic energy + Delta-G solvation = -25452.613637 eV Core-core repulsion = 21633.325878 eV Total energy + Delta-G solvation = -3819.287759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.91598 -41.80572 -40.69771 -38.63035 -38.11943 -35.40141 -33.45909 -32.27425 -31.72810 -31.02671 -28.58729 -27.93913 -25.45554 -24.63368 -23.71206 -23.39740 -21.70216 -20.40061 -19.23368 -18.94702 -18.27304 -18.00276 -17.35396 -17.16455 -16.74475 -16.45024 -16.27077 -16.07452 -15.99348 -15.48567 -15.15252 -14.74074 -14.59847 -14.39952 -14.07069 -13.89338 -13.60105 -13.45834 -13.21794 -13.18979 -12.84048 -12.62543 -12.47737 -12.23676 -12.14944 -12.12193 -11.94994 -11.49981 -11.15248 -10.95276 -10.73462 -10.40793 -9.98804 -9.68026 -9.32362 -8.10463 -6.20150 -0.31455 -0.03937 1.40804 1.43516 1.52213 1.58823 1.94709 2.08239 2.44109 2.49473 3.03245 3.18887 3.34353 3.58731 3.83009 3.92319 4.08051 4.23829 4.25416 4.33615 4.36400 4.41365 4.42107 4.54896 4.61559 4.70365 4.74360 4.82711 4.85177 4.93466 4.94793 5.09283 5.18667 5.23491 5.37073 5.38612 5.50730 5.64842 5.97591 6.05275 6.15891 6.37411 6.40190 6.89631 7.03846 7.46950 8.95818 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.003885 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.371085 B = 7205.257702 C = 8174.823539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.325 6.325 3 C 0.121 3.879 4 C -0.176 4.176 5 C -0.029 4.029 6 C -0.154 4.154 7 C 0.560 3.440 8 O -0.577 6.577 9 N -0.594 5.594 10 C 0.084 3.916 11 C -0.111 4.111 12 C 0.045 3.955 13 C -0.535 4.535 14 H 0.048 0.952 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.946 3.054 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.271 1.271 21 C -0.113 4.113 22 C 0.117 3.883 23 C -0.095 4.095 24 C 0.042 3.958 25 F -0.138 7.138 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.182 0.818 30 H 0.153 0.847 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.007 0.993 36 H 0.261 0.739 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.012 -7.452 -9.908 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.073 3.927 4 C -0.194 4.194 5 C -0.048 4.048 6 C -0.158 4.158 7 C 0.350 3.650 8 O -0.459 6.459 9 N -0.324 5.324 10 C -0.038 4.038 11 C -0.150 4.150 12 C 0.026 3.974 13 C -0.573 4.573 14 H 0.066 0.934 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.772 3.228 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.151 4.151 22 C -0.005 4.005 23 C -0.114 4.114 24 C 0.022 3.978 25 F -0.117 7.117 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.140 0.860 29 H 0.200 0.800 30 H 0.170 0.830 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -16.029 -7.345 -10.152 20.345 hybrid contribution 0.695 0.041 1.277 1.455 sum -15.334 -7.303 -8.874 19.163 Atomic orbital electron populations 1.23563 0.75073 1.06331 1.03269 1.86105 1.24670 1.25395 1.87626 1.19360 0.90432 0.86707 0.96205 1.21381 1.02152 0.89410 1.06473 1.21234 0.92003 0.99082 0.92492 1.19564 0.95083 0.91606 1.09504 1.18382 0.80160 0.88188 0.78257 1.90717 1.65738 1.42657 1.46769 1.48136 1.21234 1.11193 1.51852 1.22719 0.98128 0.88904 0.94015 1.21660 0.98497 1.01141 0.93657 1.18614 0.93063 0.91405 0.94302 1.21532 1.31810 1.05795 0.98128 0.93373 1.25621 0.95105 0.95327 1.01949 1.70012 1.33189 1.15193 1.36747 0.85732 0.77286 0.78427 0.81340 1.20370 1.20985 1.19597 1.21856 0.99589 0.99650 0.94035 1.21677 0.97467 0.84022 0.97369 1.21667 1.02214 0.89611 0.97930 1.16938 0.86858 0.82534 1.11479 1.91496 1.76898 1.48765 1.94564 0.90740 0.90455 0.85994 0.80045 0.82981 0.86852 0.90698 0.91349 0.95033 0.97492 0.92976 0.91499 0.93741 0.90822 0.89530 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.32 -6.45 10.35 -90.86 -0.94 -7.39 16 3 C 0.12 2.65 6.70 22.66 0.15 2.80 16 4 C -0.18 -3.10 9.01 22.32 0.20 -2.90 16 5 C -0.03 -0.65 9.59 22.51 0.22 -0.44 16 6 C -0.15 -4.33 5.52 -20.09 -0.11 -4.44 16 7 C 0.56 19.03 7.44 86.71 0.64 19.68 16 8 O -0.58 -22.15 16.19 -3.98 -0.06 -22.22 16 9 N -0.59 -20.74 2.98 -823.43 -2.45 -23.19 16 10 C 0.08 2.92 4.88 86.22 0.42 3.34 16 11 C -0.11 -4.88 5.16 30.53 0.16 -4.73 16 12 C 0.04 2.13 1.98 -11.51 -0.02 2.11 16 13 C -0.53 -28.70 8.53 25.60 0.22 -28.49 16 14 H 0.05 2.58 7.75 -2.91 -0.02 2.56 16 15 C 0.02 1.04 5.23 84.65 0.44 1.48 16 16 N -0.91 -50.79 11.77 21.45 0.25 -50.53 16 17 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C -0.11 -4.57 5.30 30.67 0.16 -4.40 16 22 C 0.12 4.12 6.43 86.36 0.56 4.67 16 23 C -0.10 -2.55 7.40 22.55 0.17 -2.38 16 24 C 0.04 1.10 7.30 22.41 0.16 1.26 16 25 F -0.14 -3.99 17.10 44.97 0.77 -3.22 16 26 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 27 H 0.08 0.45 7.65 -2.39 -0.02 0.43 16 28 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.18 1.72 6.27 -2.91 -0.02 1.71 16 30 H 0.15 3.10 7.97 -2.91 -0.02 3.07 16 31 H 0.11 3.53 3.54 -3.87 -0.01 3.51 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.07 3.38 6.48 -2.39 -0.02 3.37 16 34 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 37 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 40 H 0.09 2.98 7.01 -2.39 -0.02 2.97 16 41 H 0.17 4.34 5.34 -2.91 -0.02 4.33 16 Total: -1.00 -65.69 334.49 5.12 -60.57 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.05 Total: 12.30 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 4.48 Total: -11.21 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -2.20 Total: -73.72 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.00 Total: -29.61 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.77 Total: -3.22 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -65.69 5.12 -60.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334271984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.431 kcal (2) G-P(sol) polarization free energy of solvation -65.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds